Wall clock time and date at job start Mon Mar 30 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 109.47632 * 2 1 4 4 C 1.38251 * 120.03276 * 89.99394 * 3 2 1 5 5 C 1.38110 * 119.93674 * 180.02562 * 4 3 2 6 6 C 1.38498 * 120.20946 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.85539 * 0.02955 * 6 5 4 8 8 C 1.38101 * 120.03180 * 270.02602 * 3 2 1 9 9 C 1.51374 * 109.75751 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.30024 * 223.79617 * 9 7 6 11 11 C 1.50700 * 110.30297 * 101.74329 * 9 7 6 12 12 H 1.08004 * 119.99519 * 296.28265 * 11 9 7 13 13 C 1.37875 * 120.00005 * 116.00709 * 11 9 7 14 14 N 1.31515 * 119.99939 * 174.28046 * 13 11 9 15 15 Si 1.86804 * 119.99858 * 354.27332 * 13 11 9 16 16 H 1.48502 * 109.46831 * 85.84923 * 15 13 11 17 17 H 1.48501 * 109.47100 * 205.84762 * 15 13 11 18 18 H 1.48494 * 109.47362 * 325.85171 * 15 13 11 19 19 C 1.54348 * 105.17116 * 342.81715 * 9 7 6 20 20 H 1.08999 * 110.82176 * 144.56753 * 19 9 7 21 21 O 1.42904 * 110.82297 * 268.12174 * 19 9 7 22 22 C 1.42902 * 113.99490 * 210.00177 * 21 19 9 23 23 C 1.51369 * 130.38488 * 180.02562 * 6 5 4 24 24 H 1.09004 * 109.47491 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47037 * 300.00158 * 1 2 3 26 26 H 1.09004 * 109.47503 * 59.99717 * 1 2 3 27 27 H 1.09001 * 109.47037 * 239.99842 * 2 1 3 28 28 H 1.09004 * 109.47503 * 120.00283 * 2 1 3 29 29 H 1.08000 * 120.03387 * 0.03610 * 4 3 2 30 30 H 1.07997 * 119.89111 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.89594 * 359.97438 * 8 3 2 32 32 H 0.96996 * 119.99588 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47021 * 299.99187 * 22 21 19 34 34 H 1.09003 * 109.47321 * 59.99946 * 22 21 19 35 35 H 1.09001 * 109.46214 * 179.97438 * 22 21 19 36 36 H 1.09003 * 110.30604 * 316.10153 * 23 6 5 37 37 H 1.09004 * 110.30270 * 78.25444 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2630 2.0731 1.1969 5 6 2.7229 3.3754 1.1946 6 6 2.9547 4.0304 -0.0035 7 6 2.7241 3.3783 -1.2001 8 6 2.2623 2.0725 -1.1956 9 6 3.0507 4.2994 -2.3561 10 1 2.2774 4.2344 -3.1215 11 6 4.3946 3.9485 -2.9407 12 1 5.2876 4.0525 -2.3422 13 6 4.4836 3.4893 -4.2377 14 7 5.6625 3.2902 -4.7854 15 14 2.9294 3.1498 -5.2169 16 1 2.4672 4.4046 -5.8627 17 1 3.2141 2.1320 -6.2602 18 1 1.8715 2.6429 -4.3065 19 6 3.0856 5.7167 -1.7459 20 1 3.8512 6.3264 -2.2257 21 8 1.8039 6.3417 -1.8394 22 6 1.8584 7.7651 -1.9531 23 6 3.4514 5.4346 -0.2734 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0837 1.5649 2.1328 30 1 2.9024 3.8844 2.1300 31 1 2.0819 1.5623 -2.1302 32 1 5.7250 2.9668 -5.6977 33 1 2.3558 8.1808 -1.0768 34 1 2.4150 8.0369 -2.8500 35 1 0.8459 8.1632 -2.0197 36 1 2.9509 6.1457 0.3839 37 1 4.5314 5.4868 -0.1360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:50 Heat of formation + Delta-G solvation = -37.358069 kcal Electronic energy + Delta-G solvation = -17993.934124 eV Core-core repulsion = 15314.341537 eV Total energy + Delta-G solvation = -2679.592587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62929 -37.36624 -34.99947 -33.02221 -31.81454 -30.29332 -28.03995 -27.14796 -26.08381 -23.63156 -22.84966 -21.54872 -19.81557 -19.07611 -17.28800 -15.71114 -15.58418 -15.05856 -14.78369 -14.40416 -14.12768 -13.79696 -13.41723 -13.13061 -12.82613 -12.74873 -12.42071 -12.22181 -11.66673 -11.50325 -11.26164 -11.07442 -10.94732 -10.81159 -10.59574 -10.36474 -10.14645 -9.90913 -9.76044 -9.42718 -8.94743 -8.64387 -7.97139 -7.56880 -6.20628 -4.21355 2.06408 2.20617 3.25017 3.32756 3.36930 4.32823 4.37719 4.49568 5.09599 5.10610 5.19782 5.34867 5.51026 5.61286 5.65507 5.69897 5.75331 5.78193 5.87101 5.95444 6.04463 6.05442 6.12180 6.22456 6.31487 6.35022 6.40337 6.45674 6.65153 6.80852 6.90636 7.01633 7.13355 7.30793 7.48023 7.60767 7.78558 7.92289 8.38698 8.84234 9.40909 10.91269 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.010171 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.241203 B = 2752.225273 C = 3747.798303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.090 4.090 4 C -0.142 4.142 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.039 4.039 8 C -0.108 4.108 9 C 0.050 3.950 10 H 0.056 0.944 11 C -0.503 4.503 12 H 0.078 0.922 13 C 0.078 3.922 14 N -0.890 5.890 15 Si 0.874 3.126 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.262 1.262 19 C 0.085 3.915 20 H 0.080 0.920 21 O -0.386 6.386 22 C 0.032 3.968 23 C -0.091 4.091 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.267 0.733 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 0.698 8.441 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.128 4.128 6 C -0.107 4.107 7 C -0.040 4.040 8 C -0.126 4.126 9 C 0.031 3.969 10 H 0.074 0.926 11 C -0.540 4.540 12 H 0.096 0.904 13 C -0.125 4.125 14 N -0.526 5.526 15 Si 0.701 3.299 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.187 1.187 19 C 0.027 3.973 20 H 0.098 0.902 21 O -0.305 6.305 22 C -0.065 4.065 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.030 0.527 8.257 11.530 hybrid contribution -0.367 -0.069 -0.514 0.636 sum -8.397 0.458 7.743 11.431 Atomic orbital electron populations 1.21740 0.95339 1.00965 1.02149 1.20457 0.95692 0.93356 1.02240 1.19614 1.00591 0.95628 0.93177 1.20584 1.03704 0.94941 0.96740 1.20413 1.01234 0.94715 0.96434 1.20458 1.00595 0.96361 0.93330 1.21183 0.92058 0.94057 0.96700 1.20435 1.00990 0.94295 0.96928 1.18900 0.98146 0.87542 0.92338 0.92624 1.20659 0.90845 1.44826 0.97718 0.90388 1.25066 0.95992 0.94250 0.97190 1.69884 1.23262 1.44871 1.14617 0.86891 0.84160 0.78853 0.79981 1.19841 1.21337 1.18672 1.23325 0.83834 0.96090 0.94031 0.90186 1.87919 1.30130 1.18238 1.94168 1.22690 1.01593 0.82797 0.99448 1.21428 1.00540 0.93223 0.97642 0.92965 0.92790 0.92576 0.91342 0.91610 0.87157 0.87461 0.87103 0.92309 0.94747 0.94236 0.90641 0.91763 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 37.15 0.37 -1.47 16 2 C -0.08 -1.16 6.06 -27.89 -0.17 -1.32 16 3 C -0.09 -1.63 5.13 -104.67 -0.54 -2.16 16 4 C -0.14 -2.42 9.70 -39.62 -0.38 -2.80 16 5 C -0.11 -1.98 10.04 -39.53 -0.40 -2.37 16 6 C -0.11 -2.21 6.14 -104.20 -0.64 -2.85 16 7 C -0.04 -0.90 5.43 -104.20 -0.57 -1.47 16 8 C -0.11 -2.31 9.70 -39.53 -0.38 -2.69 16 9 C 0.05 1.20 2.47 -91.89 -0.23 0.98 16 10 H 0.06 1.40 4.91 -51.93 -0.25 1.14 16 11 C -0.50 -13.82 8.80 -34.44 -0.30 -14.12 16 12 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 15 Si 0.87 21.33 26.95 -169.99 -4.58 16.75 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.26 -6.22 6.81 56.52 0.39 -5.84 16 19 C 0.08 1.78 3.08 -25.33 -0.08 1.70 16 20 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 21 O -0.39 -7.69 10.45 -35.23 -0.37 -8.06 16 22 C 0.03 0.48 10.85 101.05 1.10 1.57 16 23 C -0.09 -1.74 6.50 -26.86 -0.17 -1.91 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 28 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.09 8.11 -51.93 -0.42 0.66 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -30.03 305.92 -7.77 -37.80 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.71 Total: 1.34 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.49 Total: -26.81 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.77 Total: -25.63 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.37 Total: -8.06 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.58 Total: 16.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.03 -7.77 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.444 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds