Wall clock time and date at job start Mon Mar 30 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 109.47632 * 2 1 4 4 C 1.38251 * 120.03276 * 89.99394 * 3 2 1 5 5 C 1.38110 * 119.93674 * 180.02562 * 4 3 2 6 6 C 1.38498 * 120.20946 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.85539 * 0.02955 * 6 5 4 8 8 C 1.38101 * 120.03180 * 270.02602 * 3 2 1 9 9 C 1.51374 * 109.75751 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.30024 * 223.79617 * 9 7 6 11 11 C 1.50700 * 110.30297 * 101.74329 * 9 7 6 12 12 H 1.08004 * 119.99519 * 296.28265 * 11 9 7 13 13 C 1.37875 * 120.00005 * 116.00709 * 11 9 7 14 14 N 1.31515 * 119.99939 * 174.28046 * 13 11 9 15 15 Si 1.86804 * 119.99858 * 354.27332 * 13 11 9 16 16 H 1.48502 * 109.46831 * 85.84923 * 15 13 11 17 17 H 1.48501 * 109.47100 * 205.84762 * 15 13 11 18 18 H 1.48494 * 109.47362 * 325.85171 * 15 13 11 19 19 C 1.54348 * 105.17116 * 342.81715 * 9 7 6 20 20 H 1.08999 * 110.82176 * 144.56753 * 19 9 7 21 21 O 1.42904 * 110.82297 * 268.12174 * 19 9 7 22 22 C 1.42902 * 113.99490 * 210.00177 * 21 19 9 23 23 C 1.51369 * 130.38488 * 180.02562 * 6 5 4 24 24 H 1.09004 * 109.47491 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47037 * 300.00158 * 1 2 3 26 26 H 1.09004 * 109.47503 * 59.99717 * 1 2 3 27 27 H 1.09001 * 109.47037 * 239.99842 * 2 1 3 28 28 H 1.09004 * 109.47503 * 120.00283 * 2 1 3 29 29 H 1.08000 * 120.03387 * 0.03610 * 4 3 2 30 30 H 1.07997 * 119.89111 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.89594 * 359.97438 * 8 3 2 32 32 H 0.96996 * 119.99588 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47021 * 299.99187 * 22 21 19 34 34 H 1.09003 * 109.47321 * 59.99946 * 22 21 19 35 35 H 1.09001 * 109.46214 * 179.97438 * 22 21 19 36 36 H 1.09003 * 110.30604 * 316.10153 * 23 6 5 37 37 H 1.09004 * 110.30270 * 78.25444 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2630 2.0731 1.1969 5 6 2.7229 3.3754 1.1946 6 6 2.9547 4.0304 -0.0035 7 6 2.7241 3.3783 -1.2001 8 6 2.2623 2.0725 -1.1956 9 6 3.0507 4.2994 -2.3561 10 1 2.2774 4.2344 -3.1215 11 6 4.3946 3.9485 -2.9407 12 1 5.2876 4.0525 -2.3422 13 6 4.4836 3.4893 -4.2377 14 7 5.6625 3.2902 -4.7854 15 14 2.9294 3.1498 -5.2169 16 1 2.4672 4.4046 -5.8627 17 1 3.2141 2.1320 -6.2602 18 1 1.8715 2.6429 -4.3065 19 6 3.0856 5.7167 -1.7459 20 1 3.8512 6.3264 -2.2257 21 8 1.8039 6.3417 -1.8394 22 6 1.8584 7.7651 -1.9531 23 6 3.4514 5.4346 -0.2734 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0837 1.5649 2.1328 30 1 2.9024 3.8844 2.1300 31 1 2.0819 1.5623 -2.1302 32 1 5.7250 2.9668 -5.6977 33 1 2.3558 8.1808 -1.0768 34 1 2.4150 8.0369 -2.8500 35 1 0.8459 8.1632 -2.0197 36 1 2.9509 6.1457 0.3839 37 1 4.5314 5.4868 -0.1360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:50 Heat of formation + Delta-G solvation = -54.317118 kcal Electronic energy + Delta-G solvation = -17994.669524 eV Core-core repulsion = 15314.341537 eV Total energy + Delta-G solvation = -2680.327987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17113 -38.82857 -36.47932 -34.85459 -33.40872 -31.79036 -29.73851 -28.60249 -27.39355 -25.42398 -24.19148 -22.97996 -21.39294 -20.64535 -19.31382 -17.34072 -17.18390 -16.45406 -16.21144 -16.15738 -15.47947 -15.32407 -14.76822 -14.65754 -14.44496 -14.14531 -13.96286 -13.64740 -13.36971 -12.93692 -12.70491 -12.60956 -12.47906 -12.15998 -12.02942 -11.90088 -11.78564 -11.61525 -11.44228 -11.28651 -10.81238 -10.42802 -9.49211 -9.09318 -8.38511 -6.41714 0.58760 0.69357 1.27640 1.29821 1.40928 2.26617 2.81222 2.99492 3.11716 3.63169 3.88420 3.99033 4.14532 4.27984 4.37626 4.47514 4.54336 4.56563 4.57595 4.68692 4.71780 4.79508 4.81780 4.84764 4.89801 5.00102 5.06983 5.09690 5.20095 5.31643 5.39919 5.47675 5.49831 5.66202 5.84535 6.00286 6.18250 6.30839 6.44593 6.63391 7.22952 8.77341 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.010171 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.241203 B = 2752.225273 C = 3747.798303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.133 4.133 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.079 4.079 8 C -0.136 4.136 9 C 0.044 3.956 10 H 0.039 0.961 11 C -0.500 4.500 12 H 0.041 0.959 13 C 0.026 3.974 14 N -0.936 5.936 15 Si 0.932 3.068 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.258 1.258 19 C 0.090 3.910 20 H 0.070 0.930 21 O -0.405 6.405 22 C 0.023 3.977 23 C -0.084 4.084 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.269 0.731 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 0.480 10.850 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.151 4.151 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.079 4.079 8 C -0.154 4.154 9 C 0.025 3.975 10 H 0.058 0.942 11 C -0.537 4.537 12 H 0.059 0.941 13 C -0.173 4.173 14 N -0.575 5.575 15 Si 0.757 3.243 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.182 1.182 19 C 0.033 3.967 20 H 0.088 0.912 21 O -0.324 6.324 22 C -0.073 4.073 23 C -0.121 4.121 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.169 0.831 30 H 0.160 0.840 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.006 0.323 10.676 14.635 hybrid contribution 0.237 0.017 -1.150 1.175 sum -9.769 0.339 9.526 13.649 Atomic orbital electron populations 1.21711 0.93867 1.02480 1.01719 1.20553 0.96884 0.91102 1.03238 1.20030 0.99261 0.97243 0.92378 1.21087 1.01558 0.94613 0.97844 1.20845 0.99797 0.95166 0.96752 1.20721 1.01105 0.96888 0.93630 1.21153 0.94937 0.94895 0.96951 1.20568 1.02683 0.94286 0.97892 1.18841 0.95403 0.90316 0.92966 0.94249 1.20774 0.91502 1.44024 0.97449 0.94111 1.25793 0.98758 0.94386 0.98350 1.70002 1.25302 1.46968 1.15252 0.85957 0.80661 0.79092 0.78622 1.18904 1.20658 1.18228 1.23003 0.84297 0.94281 0.95165 0.91160 1.87863 1.29177 1.21009 1.94386 1.22980 1.03636 0.80216 1.00445 1.21362 1.00709 0.93445 0.96561 0.90519 0.91963 0.94263 0.91978 0.89014 0.83082 0.83989 0.88756 0.92149 0.92719 0.94250 0.88030 0.89050 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.89 71.98 0.71 -2.46 16 2 C -0.08 -2.11 6.06 29.84 0.18 -1.93 16 3 C -0.09 -3.05 5.13 -19.90 -0.10 -3.15 16 4 C -0.13 -4.05 9.70 22.24 0.22 -3.84 16 5 C -0.11 -3.53 10.04 22.30 0.22 -3.31 16 6 C -0.12 -4.94 6.14 -19.59 -0.12 -5.06 16 7 C -0.08 -3.65 5.43 -19.59 -0.11 -3.75 16 8 C -0.14 -5.85 9.70 22.30 0.22 -5.63 16 9 C 0.04 2.18 2.47 -11.61 -0.03 2.15 16 10 H 0.04 2.04 4.91 -2.39 -0.01 2.03 16 11 C -0.50 -28.83 8.80 25.60 0.23 -28.60 16 12 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 13 C 0.03 1.52 5.47 84.65 0.46 1.98 16 14 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 15 Si 0.93 45.56 26.95 68.60 1.85 47.41 16 16 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.26 -12.29 6.81 99.48 0.68 -11.61 16 19 C 0.09 3.83 3.08 31.50 0.10 3.93 16 20 H 0.07 3.03 7.58 -2.39 -0.02 3.01 16 21 O -0.40 -15.83 10.45 -148.98 -1.56 -17.39 16 22 C 0.02 0.65 10.85 113.37 1.23 1.88 16 23 C -0.08 -3.12 6.50 30.51 0.20 -2.92 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 28 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.09 2.85 8.11 -2.39 -0.02 2.83 16 37 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -68.04 305.92 5.00 -63.03 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.00 Total: 15.31 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 3.40 Total: -50.71 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.30 Total: -57.66 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.56 Total: -17.39 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.85 Total: 47.41 kcal Total: -68.04 5.00 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.718 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds