Wall clock time and date at job start Mon Mar 30 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47065 * 2 1 4 4 C 1.38249 * 120.03407 * 269.72463 * 3 2 1 5 5 C 1.38103 * 119.93774 * 179.72287 * 4 3 2 6 6 C 1.38504 * 120.21091 * 0.57746 * 5 4 3 7 7 C 1.38215 * 119.85258 * 359.69603 * 6 5 4 8 8 C 1.38109 * 120.03313 * 89.99927 * 3 2 1 9 9 C 1.51361 * 109.75775 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.30475 * 136.11315 * 9 7 6 11 11 C 1.50708 * 110.30163 * 258.26117 * 9 7 6 12 12 H 1.07998 * 119.99826 * 35.40755 * 11 9 7 13 13 C 1.37875 * 119.99857 * 215.41047 * 11 9 7 14 14 N 1.31516 * 119.99948 * 183.14020 * 13 11 9 15 15 Si 1.86800 * 120.00150 * 3.12881 * 13 11 9 16 16 H 1.48500 * 109.46815 * 88.80730 * 15 13 11 17 17 H 1.48502 * 109.47194 * 208.80303 * 15 13 11 18 18 H 1.48496 * 109.47436 * 328.80361 * 15 13 11 19 19 C 1.54346 * 105.17529 * 17.18366 * 9 7 6 20 20 H 1.08997 * 110.99127 * 91.95247 * 19 9 7 21 21 O 1.42894 * 110.82338 * 215.42868 * 19 9 7 22 22 C 1.42905 * 113.99880 * 204.42194 * 21 19 9 23 23 C 1.51369 * 130.38776 * 179.72291 * 6 5 4 24 24 H 1.09001 * 109.47127 * 60.00368 * 1 2 3 25 25 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47107 * 299.99711 * 1 2 3 27 27 H 1.09001 * 109.47127 * 119.99631 * 2 1 3 28 28 H 1.09005 * 109.47394 * 239.99703 * 2 1 3 29 29 H 1.08003 * 120.03339 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.89765 * 180.27825 * 5 4 3 31 31 H 1.08001 * 119.88644 * 0.02562 * 8 3 2 32 32 H 0.96999 * 119.99809 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47163 * 180.02562 * 22 21 19 34 34 H 1.08999 * 109.46659 * 300.00142 * 22 21 19 35 35 H 1.08994 * 109.46872 * 60.00118 * 22 21 19 36 36 H 1.09000 * 110.29820 * 281.70531 * 23 6 5 37 37 H 1.08998 * 110.30094 * 43.76054 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2683 2.0713 -1.1968 5 6 2.7232 3.3752 -1.1946 6 6 2.9553 4.0303 0.0035 7 6 2.7247 3.3781 1.2001 8 6 2.2627 2.0725 1.1957 9 6 3.0504 4.2995 2.3560 10 1 2.2761 4.2355 3.1205 11 6 4.3945 3.9494 2.9410 12 1 5.1916 3.6090 2.2969 13 6 4.6063 4.0637 4.2986 14 7 5.7963 3.8178 4.8015 15 14 3.2030 4.5683 5.4237 16 1 2.4643 3.3586 5.8665 17 1 3.7492 5.2763 6.6093 18 1 2.2801 5.4709 4.6898 19 6 3.0847 5.7168 1.7458 20 1 2.1083 6.1961 1.8165 21 8 4.0877 6.5167 2.3751 22 6 3.8452 7.9227 2.2941 23 6 3.4519 5.4345 0.2734 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.0926 1.5618 -2.1328 30 1 2.9031 3.8843 -2.1299 31 1 2.0826 1.5620 2.1302 32 1 5.9454 3.8986 5.7565 33 1 4.6509 8.4597 2.7945 34 1 3.8030 8.2243 1.2476 35 1 2.8970 8.1562 2.7782 36 1 4.5319 5.4866 0.1363 37 1 2.9529 6.1452 -0.3853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:52 Heat of formation + Delta-G solvation = -29.474256 kcal Electronic energy + Delta-G solvation = -17995.856311 eV Core-core repulsion = 15316.605591 eV Total energy + Delta-G solvation = -2679.250719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65836 -37.28650 -34.96118 -32.89844 -31.76181 -30.34919 -28.06888 -27.10649 -25.71835 -23.76222 -22.81809 -21.58763 -19.87984 -19.04525 -17.08516 -15.72812 -15.42927 -15.18624 -14.75760 -14.22022 -13.95162 -13.73841 -13.51701 -13.08716 -12.87497 -12.63526 -12.39508 -12.25251 -11.54219 -11.49215 -11.35421 -11.08475 -10.91204 -10.82055 -10.67943 -10.30959 -10.21694 -9.85772 -9.58066 -9.25502 -8.75649 -8.42526 -8.07572 -7.63695 -5.98787 -3.96013 1.95598 2.08900 3.32898 3.40719 3.42382 4.36672 4.49308 4.62891 5.01720 5.12803 5.25034 5.35182 5.52694 5.54986 5.61809 5.66539 5.74615 5.82029 5.85741 5.95314 6.01888 6.06937 6.11283 6.16055 6.19316 6.33284 6.33500 6.50463 6.64008 6.73125 6.86257 6.97559 7.04781 7.19412 7.46288 7.61310 7.70642 8.19992 8.58629 9.05969 9.63861 11.14707 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.008487 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.843087 B = 3298.192526 C = 4100.668920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.090 4.090 4 C -0.138 4.138 5 C -0.110 4.110 6 C -0.108 4.108 7 C -0.042 4.042 8 C -0.104 4.104 9 C 0.047 3.953 10 H 0.048 0.952 11 C -0.476 4.476 12 H 0.073 0.927 13 C 0.084 3.916 14 N -0.898 5.898 15 Si 0.876 3.124 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.267 1.267 19 C 0.083 3.917 20 H 0.047 0.953 21 O -0.334 6.334 22 C 0.024 3.976 23 C -0.093 4.093 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 -0.215 -9.162 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.156 4.156 5 C -0.128 4.128 6 C -0.108 4.108 7 C -0.043 4.043 8 C -0.123 4.123 9 C 0.028 3.972 10 H 0.066 0.934 11 C -0.514 4.514 12 H 0.092 0.908 13 C -0.118 4.118 14 N -0.536 5.536 15 Si 0.704 3.296 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.192 1.192 19 C 0.025 3.975 20 H 0.065 0.935 21 O -0.251 6.251 22 C -0.074 4.074 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.053 -0.303 -8.884 12.688 hybrid contribution -0.762 0.524 0.484 1.044 sum -9.815 0.222 -8.400 12.921 Atomic orbital electron populations 1.21738 0.95300 1.01052 1.02099 1.20465 0.95695 0.93240 1.02382 1.19637 1.00513 0.95716 0.93133 1.20629 1.03266 0.94832 0.96877 1.20443 1.01133 0.94714 0.96513 1.20461 1.00329 0.96641 0.93357 1.20943 0.93026 0.94070 0.96215 1.20444 1.00661 0.94023 0.97124 1.18881 0.98800 0.87615 0.91902 0.93403 1.20407 0.94448 1.43816 0.92703 0.90842 1.24912 0.95187 0.93916 0.97782 1.69885 1.21370 1.49543 1.12757 0.86867 0.83212 0.78965 0.80516 1.20646 1.21520 1.19169 1.22847 0.88964 0.94766 0.90953 0.93488 1.88340 1.46022 1.13746 1.76967 1.22721 1.00379 0.85024 0.99239 1.21439 1.01746 0.92395 0.97409 0.92837 0.92919 0.92542 0.91193 0.91579 0.87021 0.87289 0.86663 0.92777 0.90422 0.95214 0.95282 0.89548 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.30 16 2 C -0.08 -1.06 6.07 -27.89 -0.17 -1.23 16 3 C -0.09 -1.50 5.13 -104.67 -0.54 -2.04 16 4 C -0.14 -2.20 9.70 -39.63 -0.38 -2.58 16 5 C -0.11 -1.87 10.04 -39.53 -0.40 -2.27 16 6 C -0.11 -2.12 6.14 -104.20 -0.64 -2.76 16 7 C -0.04 -0.91 5.43 -104.21 -0.57 -1.48 16 8 C -0.10 -2.05 9.70 -39.53 -0.38 -2.43 16 9 C 0.05 1.13 2.47 -91.89 -0.23 0.90 16 10 H 0.05 1.15 5.21 -51.93 -0.27 0.88 16 11 C -0.48 -13.48 7.90 -34.44 -0.27 -13.75 16 12 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 13 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 14 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.88 21.93 27.10 -169.99 -4.61 17.32 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.27 -6.40 6.66 56.52 0.38 -6.02 16 19 C 0.08 1.78 3.35 -25.32 -0.08 1.70 16 20 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 21 O -0.33 -7.58 9.29 -35.23 -0.33 -7.90 16 22 C 0.02 0.41 10.88 101.05 1.10 1.51 16 23 C -0.09 -1.77 6.51 -26.85 -0.17 -1.95 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -31.19 304.77 -7.78 -38.97 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.75 Total: -0.72 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -2.47 Total: -25.35 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.33 Total: -7.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.61 Total: 17.32 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.19 -7.78 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.497 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds