Wall clock time and date at job start Mon Mar 30 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47065 * 2 1 4 4 C 1.38249 * 120.03407 * 269.72463 * 3 2 1 5 5 C 1.38103 * 119.93774 * 179.72287 * 4 3 2 6 6 C 1.38504 * 120.21091 * 0.57746 * 5 4 3 7 7 C 1.38215 * 119.85258 * 359.69603 * 6 5 4 8 8 C 1.38109 * 120.03313 * 89.99927 * 3 2 1 9 9 C 1.51361 * 109.75775 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.30475 * 136.11315 * 9 7 6 11 11 C 1.50708 * 110.30163 * 258.26117 * 9 7 6 12 12 H 1.07998 * 119.99826 * 35.40755 * 11 9 7 13 13 C 1.37875 * 119.99857 * 215.41047 * 11 9 7 14 14 N 1.31516 * 119.99948 * 183.14020 * 13 11 9 15 15 Si 1.86800 * 120.00150 * 3.12881 * 13 11 9 16 16 H 1.48500 * 109.46815 * 88.80730 * 15 13 11 17 17 H 1.48502 * 109.47194 * 208.80303 * 15 13 11 18 18 H 1.48496 * 109.47436 * 328.80361 * 15 13 11 19 19 C 1.54346 * 105.17529 * 17.18366 * 9 7 6 20 20 H 1.08997 * 110.99127 * 91.95247 * 19 9 7 21 21 O 1.42894 * 110.82338 * 215.42868 * 19 9 7 22 22 C 1.42905 * 113.99880 * 204.42194 * 21 19 9 23 23 C 1.51369 * 130.38776 * 179.72291 * 6 5 4 24 24 H 1.09001 * 109.47127 * 60.00368 * 1 2 3 25 25 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47107 * 299.99711 * 1 2 3 27 27 H 1.09001 * 109.47127 * 119.99631 * 2 1 3 28 28 H 1.09005 * 109.47394 * 239.99703 * 2 1 3 29 29 H 1.08003 * 120.03339 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.89765 * 180.27825 * 5 4 3 31 31 H 1.08001 * 119.88644 * 0.02562 * 8 3 2 32 32 H 0.96999 * 119.99809 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47163 * 180.02562 * 22 21 19 34 34 H 1.08999 * 109.46659 * 300.00142 * 22 21 19 35 35 H 1.08994 * 109.46872 * 60.00118 * 22 21 19 36 36 H 1.09000 * 110.29820 * 281.70531 * 23 6 5 37 37 H 1.08998 * 110.30094 * 43.76054 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2683 2.0713 -1.1968 5 6 2.7232 3.3752 -1.1946 6 6 2.9553 4.0303 0.0035 7 6 2.7247 3.3781 1.2001 8 6 2.2627 2.0725 1.1957 9 6 3.0504 4.2995 2.3560 10 1 2.2761 4.2355 3.1205 11 6 4.3945 3.9494 2.9410 12 1 5.1916 3.6090 2.2969 13 6 4.6063 4.0637 4.2986 14 7 5.7963 3.8178 4.8015 15 14 3.2030 4.5683 5.4237 16 1 2.4643 3.3586 5.8665 17 1 3.7492 5.2763 6.6093 18 1 2.2801 5.4709 4.6898 19 6 3.0847 5.7168 1.7458 20 1 2.1083 6.1961 1.8165 21 8 4.0877 6.5167 2.3751 22 6 3.8452 7.9227 2.2941 23 6 3.4519 5.4345 0.2734 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.0926 1.5618 -2.1328 30 1 2.9031 3.8843 -2.1299 31 1 2.0826 1.5620 2.1302 32 1 5.9454 3.8986 5.7565 33 1 4.6509 8.4597 2.7945 34 1 3.8030 8.2243 1.2476 35 1 2.8970 8.1562 2.7782 36 1 4.5319 5.4866 0.1363 37 1 2.9529 6.1452 -0.3853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:51 Heat of formation + Delta-G solvation = -47.669201 kcal Electronic energy + Delta-G solvation = -17996.645303 eV Core-core repulsion = 15316.605591 eV Total energy + Delta-G solvation = -2680.039711 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.14787 -38.79335 -36.41079 -34.72956 -33.36724 -31.77942 -29.73939 -28.53763 -27.11690 -25.58804 -24.09212 -22.96897 -21.42257 -20.58124 -19.14624 -17.36439 -17.04326 -16.52883 -16.20876 -15.97070 -15.37219 -15.20949 -14.88349 -14.60895 -14.23482 -14.16962 -13.94649 -13.61011 -13.19387 -12.90939 -12.77914 -12.65382 -12.46221 -12.21313 -12.01904 -11.83082 -11.77501 -11.56326 -11.23685 -11.19718 -10.71216 -10.23557 -9.51494 -9.10949 -8.22247 -6.22416 0.56061 0.65886 1.31838 1.34385 1.44376 2.38531 2.94395 3.07738 3.19490 3.64242 3.93952 3.99813 4.15284 4.25744 4.29333 4.50838 4.51534 4.57143 4.60421 4.65564 4.69401 4.75951 4.81756 4.87518 4.96006 5.07891 5.09910 5.12707 5.14515 5.32126 5.42078 5.48520 5.57702 5.64050 5.82967 5.98472 6.25259 6.33491 6.61382 6.84142 7.40318 8.95727 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.008487 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.843087 B = 3298.192526 C = 4100.668920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.087 4.087 4 C -0.130 4.130 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.127 4.127 9 C 0.039 3.961 10 H 0.041 0.959 11 C -0.467 4.467 12 H 0.020 0.980 13 C 0.025 3.975 14 N -0.951 5.951 15 Si 0.939 3.061 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.249 1.249 19 C 0.084 3.916 20 H 0.070 0.930 21 O -0.378 6.378 22 C 0.017 3.983 23 C -0.085 4.085 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 -0.083 -11.433 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.147 4.147 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.146 4.146 9 C 0.020 3.980 10 H 0.059 0.941 11 C -0.505 4.505 12 H 0.039 0.961 13 C -0.172 4.172 14 N -0.592 5.592 15 Si 0.764 3.236 16 H -0.196 1.196 17 H -0.214 1.214 18 H -0.173 1.173 19 C 0.025 3.975 20 H 0.088 0.912 21 O -0.297 6.297 22 C -0.080 4.080 23 C -0.122 4.122 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.169 0.831 30 H 0.160 0.840 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.578 -0.163 -11.177 16.094 hybrid contribution 0.045 0.420 1.054 1.135 sum -11.533 0.257 -10.123 15.348 Atomic orbital electron populations 1.21708 0.93736 1.02455 1.01864 1.20555 0.96959 0.91009 1.03271 1.20039 0.99106 0.97231 0.92335 1.21122 1.01128 0.94443 0.98030 1.20842 0.99769 0.95185 0.96702 1.20654 1.01006 0.96887 0.93779 1.20874 0.95986 0.95020 0.96151 1.20598 1.01906 0.93788 0.98271 1.18880 0.95725 0.90431 0.92970 0.94131 1.20473 0.95391 1.42459 0.92163 0.96131 1.25725 0.97659 0.94342 0.99467 1.70044 1.23844 1.52242 1.13098 0.85855 0.80251 0.79216 0.78300 1.19573 1.21421 1.17313 1.22847 0.89882 0.92943 0.91809 0.91220 1.88266 1.47116 1.16624 1.77658 1.22958 1.01447 0.82279 1.01280 1.21345 1.00785 0.93364 0.96694 0.92033 0.90744 0.93824 0.91767 0.89283 0.83074 0.84012 0.87717 0.92835 0.89687 0.92674 0.93855 0.91603 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.89 71.98 0.71 -2.10 16 2 C -0.08 -1.92 6.07 29.85 0.18 -1.74 16 3 C -0.09 -2.74 5.13 -19.89 -0.10 -2.84 16 4 C -0.13 -3.65 9.70 22.24 0.22 -3.43 16 5 C -0.11 -3.30 10.04 22.30 0.22 -3.08 16 6 C -0.12 -4.70 6.14 -19.59 -0.12 -4.82 16 7 C -0.08 -3.50 5.43 -19.60 -0.11 -3.61 16 8 C -0.13 -5.04 9.70 22.30 0.22 -4.83 16 9 C 0.04 1.90 2.47 -11.62 -0.03 1.87 16 10 H 0.04 1.98 5.21 -2.39 -0.01 1.97 16 11 C -0.47 -27.81 7.90 25.60 0.20 -27.61 16 12 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 13 C 0.02 1.48 5.47 84.65 0.46 1.94 16 14 N -0.95 -61.71 13.96 21.45 0.30 -61.41 16 15 Si 0.94 46.38 27.10 68.60 1.86 48.24 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 18 H -0.25 -11.46 6.66 99.48 0.66 -10.80 16 19 C 0.08 3.53 3.35 31.51 0.11 3.63 16 20 H 0.07 2.57 7.88 -2.39 -0.02 2.56 16 21 O -0.38 -17.20 9.29 -148.98 -1.38 -18.59 16 22 C 0.02 0.55 10.88 113.37 1.23 1.78 16 23 C -0.08 -3.15 6.51 30.52 0.20 -2.95 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 28 H 0.09 1.73 8.08 -2.38 -0.02 1.71 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.07 2.69 8.10 -2.39 -0.02 2.67 16 37 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -71.99 304.77 5.16 -66.83 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.99 Total: 12.69 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 3.40 Total: -47.78 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.30 Total: -61.41 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.38 Total: -18.59 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.86 Total: 48.24 kcal Total: -71.99 5.16 -66.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.165 kcal (2) G-P(sol) polarization free energy of solvation -71.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds