Wall clock time and date at job start Mon Mar 30 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46964 * 2 1 4 4 C 1.38251 * 120.03592 * 270.02517 * 3 2 1 5 5 C 1.38099 * 119.93840 * 180.02562 * 4 3 2 6 6 C 1.38500 * 120.21509 * 359.92753 * 5 4 3 7 7 C 1.38211 * 119.84953 * 0.07767 * 6 5 4 8 8 C 1.38107 * 120.03091 * 90.00428 * 3 2 1 9 9 C 1.51898 * 109.81074 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.48645 * 136.08071 * 9 7 6 11 11 C 1.50698 * 110.36652 * 258.39658 * 9 7 6 12 12 H 1.08007 * 119.99789 * 115.47339 * 11 9 7 13 13 C 1.37881 * 120.00568 * 295.47139 * 11 9 7 14 14 N 1.31517 * 119.99269 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00170 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47110 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46660 * 120.00066 * 15 13 11 18 18 H 1.48497 * 109.46705 * 240.00120 * 15 13 11 19 19 C 1.54341 * 104.91222 * 17.20975 * 9 7 6 20 20 H 1.08998 * 110.81907 * 215.29965 * 19 9 7 21 21 O 1.42899 * 110.82068 * 91.94907 * 19 9 7 22 22 C 1.42905 * 113.99778 * 152.70521 * 21 19 9 23 23 C 1.51368 * 130.39166 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46763 * 299.99877 * 1 2 3 26 26 H 1.08999 * 109.47176 * 59.99850 * 1 2 3 27 27 H 1.08995 * 109.47037 * 240.00297 * 2 1 3 28 28 H 1.08999 * 109.47176 * 120.00150 * 2 1 3 29 29 H 1.07999 * 120.03092 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.89525 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.89629 * 0.02562 * 8 3 2 32 32 H 0.97000 * 119.99524 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.47103 * 180.02562 * 22 21 19 34 34 H 1.09004 * 109.47054 * 299.99711 * 22 21 19 35 35 H 1.09000 * 109.47187 * 59.99767 * 22 21 19 36 36 H 1.08995 * 110.30741 * 43.92146 * 23 6 5 37 37 H 1.08998 * 110.30373 * 281.76697 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0734 -1.1969 5 6 2.7233 3.3753 -1.1945 6 6 2.9545 4.0306 0.0035 7 6 2.7246 3.3782 1.2001 8 6 2.2628 2.0724 1.1957 9 6 3.0510 4.3018 2.3610 10 1 2.2782 4.2394 3.1271 11 6 4.3964 3.9551 2.9447 12 1 5.2079 4.6658 2.8905 13 6 4.5916 2.7307 3.5479 14 7 3.6035 1.8652 3.6135 15 14 6.2591 2.3014 4.2720 16 1 7.1940 3.4372 4.0694 17 1 6.1133 2.0328 5.7253 18 1 6.7956 1.0927 3.5965 19 6 3.0825 5.7170 1.7460 20 1 3.8454 6.3307 2.2250 21 8 1.7999 6.3401 1.8394 22 6 1.8493 7.7675 1.8868 23 6 3.4509 5.4349 0.2735 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0829 1.5653 -2.1328 30 1 2.9025 3.8846 -2.1299 31 1 2.0829 1.5621 2.1303 32 1 3.7406 1.0040 4.0382 33 1 0.8364 8.1640 1.9577 34 1 2.4241 8.0825 2.7578 35 1 2.3251 8.1449 0.9816 36 1 2.9504 6.1459 -0.3838 37 1 4.5309 5.4873 0.1362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:53 Heat of formation + Delta-G solvation = -35.608735 kcal Electronic energy + Delta-G solvation = -18128.088341 eV Core-core repulsion = 15448.571610 eV Total energy + Delta-G solvation = -2679.516730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31358 -37.18074 -34.78811 -32.97436 -31.56564 -29.65508 -27.74005 -26.78943 -26.01641 -23.72044 -22.58897 -21.31509 -19.63650 -18.96210 -16.81412 -15.50560 -15.25299 -14.81466 -14.67167 -14.39668 -13.94166 -13.63666 -13.13672 -12.92541 -12.67582 -12.28383 -12.17981 -11.99954 -11.37663 -11.18711 -11.10271 -10.92933 -10.81515 -10.54623 -10.53005 -10.32510 -10.09169 -9.78081 -9.62085 -9.27987 -8.76490 -8.51978 -7.53917 -7.26204 -6.08612 -4.17348 2.43192 2.61479 3.25151 3.33154 3.35806 4.29030 4.55861 4.88886 5.19619 5.38209 5.47318 5.56169 5.64301 5.71708 5.82328 5.88520 5.95945 5.98457 6.02619 6.07541 6.20144 6.25877 6.39122 6.44650 6.49275 6.62149 6.67222 6.83821 7.00935 7.13276 7.35520 7.45414 7.53214 7.70018 7.82453 8.00586 8.10721 8.23786 8.24862 8.84226 9.46477 10.94943 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.011495 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.588731 B = 2435.345331 C = 3866.823596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.108 4.108 4 C -0.146 4.146 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.023 4.023 8 C -0.076 4.076 9 C 0.085 3.915 10 H 0.048 0.952 11 C -0.509 4.509 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.877 5.877 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.085 3.915 20 H 0.068 0.932 21 O -0.381 6.381 22 C 0.032 3.968 23 C -0.089 4.089 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.262 0.738 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 2.548 -5.796 7.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.108 4.108 4 C -0.165 4.165 5 C -0.142 4.142 6 C -0.120 4.120 7 C -0.023 4.023 8 C -0.095 4.095 9 C 0.066 3.934 10 H 0.066 0.934 11 C -0.546 4.546 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.514 5.514 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.027 3.973 20 H 0.086 0.914 21 O -0.300 6.300 22 C -0.065 4.065 23 C -0.126 4.126 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.163 0.837 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.229 2.260 -5.713 6.941 hybrid contribution 1.282 -0.158 0.156 1.301 sum -1.947 2.102 -5.557 6.252 Atomic orbital electron populations 1.21728 0.95679 1.00570 1.02009 1.20393 0.95403 0.93802 1.01726 1.19745 1.01794 0.95669 0.93593 1.20515 1.04331 0.94998 0.96611 1.20250 1.03012 0.94886 0.96047 1.20442 1.01565 0.96141 0.93838 1.21094 0.91633 0.94300 0.95314 1.21137 0.96660 0.93984 0.97677 1.18496 0.97893 0.85224 0.91749 0.93392 1.20943 0.95761 1.01431 1.36511 0.92061 1.24926 0.96919 0.96117 0.95562 1.69855 1.31024 1.07585 1.42900 0.86466 0.83919 0.78482 0.78768 1.19740 1.20856 1.20936 1.23137 0.83497 0.96380 0.94245 0.91435 1.87955 1.30046 1.17551 1.94408 1.22668 1.01569 0.83004 0.99235 1.21386 1.00104 0.93743 0.97356 0.93340 0.92457 0.93102 0.92350 0.91386 0.87945 0.88243 0.83654 0.92805 0.90625 0.94493 0.94929 0.92290 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.90 37.16 0.37 -1.76 16 2 C -0.08 -1.29 6.07 -27.88 -0.17 -1.46 16 3 C -0.11 -2.24 5.13 -104.67 -0.54 -2.77 16 4 C -0.15 -2.87 9.70 -39.63 -0.38 -3.25 16 5 C -0.12 -2.51 10.04 -39.54 -0.40 -2.90 16 6 C -0.12 -2.69 6.14 -104.21 -0.64 -3.33 16 7 C -0.02 -0.57 5.19 -103.94 -0.54 -1.11 16 8 C -0.08 -1.84 8.64 -39.53 -0.34 -2.18 16 9 C 0.08 2.15 2.53 -91.63 -0.23 1.92 16 10 H 0.05 1.34 8.11 -51.93 -0.42 0.92 16 11 C -0.51 -13.59 8.49 -34.44 -0.29 -13.88 16 12 H 0.06 1.60 7.59 -52.48 -0.40 1.20 16 13 C 0.07 1.81 5.34 -17.82 -0.10 1.72 16 14 N -0.88 -23.87 10.03 55.43 0.56 -23.31 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.08 1.82 3.03 -25.30 -0.08 1.74 16 20 H 0.07 1.38 7.46 -51.93 -0.39 1.00 16 21 O -0.38 -7.84 10.45 -35.23 -0.37 -8.21 16 22 C 0.03 0.49 10.87 101.05 1.10 1.59 16 23 C -0.09 -1.79 6.51 -26.83 -0.17 -1.96 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 28 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 29 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.15 3.71 6.12 -52.49 -0.32 3.39 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -28.44 303.86 -8.40 -36.84 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.73 Total: 1.93 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -2.41 Total: -27.64 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: 0.56 Total: -23.31 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.37 Total: -8.21 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.44 -8.40 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.230 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds