Wall clock time and date at job start Mon Mar 30 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46964 * 2 1 4 4 C 1.38251 * 120.03592 * 270.02517 * 3 2 1 5 5 C 1.38099 * 119.93840 * 180.02562 * 4 3 2 6 6 C 1.38500 * 120.21509 * 359.92753 * 5 4 3 7 7 C 1.38211 * 119.84953 * 0.07767 * 6 5 4 8 8 C 1.38107 * 120.03091 * 90.00428 * 3 2 1 9 9 C 1.51898 * 109.81074 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.48645 * 136.08071 * 9 7 6 11 11 C 1.50698 * 110.36652 * 258.39658 * 9 7 6 12 12 H 1.08007 * 119.99789 * 115.47339 * 11 9 7 13 13 C 1.37881 * 120.00568 * 295.47139 * 11 9 7 14 14 N 1.31517 * 119.99269 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00170 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47110 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46660 * 120.00066 * 15 13 11 18 18 H 1.48497 * 109.46705 * 240.00120 * 15 13 11 19 19 C 1.54341 * 104.91222 * 17.20975 * 9 7 6 20 20 H 1.08998 * 110.81907 * 215.29965 * 19 9 7 21 21 O 1.42899 * 110.82068 * 91.94907 * 19 9 7 22 22 C 1.42905 * 113.99778 * 152.70521 * 21 19 9 23 23 C 1.51368 * 130.39166 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46763 * 299.99877 * 1 2 3 26 26 H 1.08999 * 109.47176 * 59.99850 * 1 2 3 27 27 H 1.08995 * 109.47037 * 240.00297 * 2 1 3 28 28 H 1.08999 * 109.47176 * 120.00150 * 2 1 3 29 29 H 1.07999 * 120.03092 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.89525 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.89629 * 0.02562 * 8 3 2 32 32 H 0.97000 * 119.99524 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.47103 * 180.02562 * 22 21 19 34 34 H 1.09004 * 109.47054 * 299.99711 * 22 21 19 35 35 H 1.09000 * 109.47187 * 59.99767 * 22 21 19 36 36 H 1.08995 * 110.30741 * 43.92146 * 23 6 5 37 37 H 1.08998 * 110.30373 * 281.76697 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0734 -1.1969 5 6 2.7233 3.3753 -1.1945 6 6 2.9545 4.0306 0.0035 7 6 2.7246 3.3782 1.2001 8 6 2.2628 2.0724 1.1957 9 6 3.0510 4.3018 2.3610 10 1 2.2782 4.2394 3.1271 11 6 4.3964 3.9551 2.9447 12 1 5.2079 4.6658 2.8905 13 6 4.5916 2.7307 3.5479 14 7 3.6035 1.8652 3.6135 15 14 6.2591 2.3014 4.2720 16 1 7.1940 3.4372 4.0694 17 1 6.1133 2.0328 5.7253 18 1 6.7956 1.0927 3.5965 19 6 3.0825 5.7170 1.7460 20 1 3.8454 6.3307 2.2250 21 8 1.7999 6.3401 1.8394 22 6 1.8493 7.7675 1.8868 23 6 3.4509 5.4349 0.2735 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0829 1.5653 -2.1328 30 1 2.9025 3.8846 -2.1299 31 1 2.0829 1.5621 2.1303 32 1 3.7406 1.0040 4.0382 33 1 0.8364 8.1640 1.9577 34 1 2.4241 8.0825 2.7578 35 1 2.3251 8.1449 0.9816 36 1 2.9504 6.1459 -0.3838 37 1 4.5309 5.4873 0.1362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:53 Heat of formation + Delta-G solvation = -50.237206 kcal Electronic energy + Delta-G solvation = -18128.722679 eV Core-core repulsion = 15448.571610 eV Total energy + Delta-G solvation = -2680.151068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97272 -38.72795 -36.38096 -34.79900 -33.16528 -31.32496 -29.46878 -28.39278 -27.37631 -25.54915 -24.07627 -22.90390 -21.33831 -20.61062 -18.69149 -17.16799 -16.98603 -16.41514 -16.26794 -16.01186 -15.37727 -15.17589 -14.64684 -14.46543 -14.17374 -13.93435 -13.87995 -13.43968 -13.12652 -12.83073 -12.61006 -12.59480 -12.41781 -12.20987 -12.00914 -11.89900 -11.67801 -11.49799 -11.30894 -11.07009 -10.57351 -10.33551 -9.23821 -8.94425 -8.09481 -6.26816 0.77556 0.94154 1.39059 1.40629 1.51205 2.38241 3.05685 3.13271 3.23913 3.78376 4.01669 4.10158 4.21128 4.40596 4.47544 4.54612 4.59200 4.60257 4.60939 4.81168 4.82413 4.87723 4.89521 4.98778 5.03843 5.08769 5.20402 5.34059 5.38448 5.42554 5.55579 5.69207 5.78976 5.83952 6.08575 6.15894 6.36846 6.48676 6.55109 6.82937 7.39408 8.91900 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.011495 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.588731 B = 2435.345331 C = 3866.823596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.111 4.111 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.135 4.135 7 C -0.059 4.059 8 C -0.107 4.107 9 C 0.077 3.923 10 H -0.001 1.001 11 C -0.526 4.526 12 H 0.062 0.938 13 C 0.020 3.980 14 N -0.898 5.898 15 Si 0.957 3.043 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.284 1.284 19 C 0.092 3.908 20 H 0.072 0.928 21 O -0.409 6.409 22 C 0.024 3.976 23 C -0.080 4.080 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 2.843 -8.213 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.111 4.111 4 C -0.160 4.160 5 C -0.140 4.140 6 C -0.136 4.136 7 C -0.060 4.060 8 C -0.125 4.125 9 C 0.059 3.941 10 H 0.017 0.983 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.181 4.181 14 N -0.536 5.536 15 Si 0.782 3.218 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.210 1.210 19 C 0.035 3.965 20 H 0.090 0.910 21 O -0.328 6.328 22 C -0.072 4.072 23 C -0.117 4.117 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.793 2.575 -8.128 8.973 hybrid contribution 1.054 -0.239 0.914 1.415 sum -1.739 2.337 -7.215 7.781 Atomic orbital electron populations 1.21679 0.93967 1.02241 1.01493 1.20455 0.96835 0.91633 1.02313 1.20124 1.00781 0.97274 0.92930 1.20971 1.02621 0.94917 0.97486 1.20695 1.01522 0.95207 0.96601 1.20781 1.01864 0.97120 0.93787 1.21159 0.93785 0.94909 0.96120 1.21084 0.98955 0.94419 0.98089 1.18443 0.95757 0.88540 0.91362 0.98322 1.21225 0.96467 1.01662 1.37043 0.91969 1.25715 1.00157 0.96151 0.96064 1.70035 1.32590 1.07667 1.43258 0.85518 0.80089 0.78160 0.77986 1.18831 1.20443 1.21005 1.22914 0.84107 0.94389 0.95105 0.90999 1.87903 1.29602 1.20664 1.94658 1.22959 1.03503 0.80118 1.00593 1.21346 1.00740 0.93160 0.96485 0.90592 0.94501 0.92063 0.89668 0.92818 0.84024 0.84630 0.86627 0.92975 0.88404 0.93857 0.92838 0.89738 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.90 71.98 0.71 -3.14 16 2 C -0.08 -2.47 6.07 29.85 0.18 -2.28 16 3 C -0.11 -4.54 5.13 -19.89 -0.10 -4.64 16 4 C -0.14 -5.16 9.70 22.24 0.22 -4.95 16 5 C -0.12 -4.61 10.04 22.30 0.22 -4.39 16 6 C -0.14 -5.97 6.14 -19.60 -0.12 -6.09 16 7 C -0.06 -3.04 5.19 -19.42 -0.10 -3.14 16 8 C -0.11 -5.36 8.64 22.30 0.19 -5.17 16 9 C 0.08 4.13 2.53 -11.45 -0.03 4.10 16 10 H 0.00 -0.08 8.11 -2.39 -0.02 -0.10 16 11 C -0.53 -29.14 8.49 25.60 0.22 -28.93 16 12 H 0.06 3.32 7.59 -2.91 -0.02 3.29 16 13 C 0.02 1.09 5.34 84.66 0.45 1.54 16 14 N -0.90 -51.47 10.03 21.45 0.22 -51.26 16 15 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C 0.09 4.01 3.03 31.52 0.10 4.10 16 20 H 0.07 2.96 7.46 -2.39 -0.02 2.95 16 21 O -0.41 -16.89 10.45 -148.98 -1.56 -18.45 16 22 C 0.02 0.70 10.87 113.37 1.23 1.93 16 23 C -0.08 -3.12 6.51 30.53 0.20 -2.93 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 2.33 8.09 -2.39 -0.02 2.32 16 28 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.12 6.37 6.12 -2.91 -0.02 6.35 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.18 8.11 -2.38 -0.02 1.16 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -64.59 303.86 5.09 -59.50 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.03 Total: 18.52 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 3.37 Total: -53.98 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.22 Total: -51.26 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.56 Total: -18.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.59 5.09 -59.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.264 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds