Wall clock time and date at job start Mon Mar 30 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99740 * 2 1 4 4 C 1.38752 * 120.06226 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94785 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05209 * 359.97347 * 5 4 3 7 7 C 1.50704 * 119.93989 * 180.02562 * 6 5 4 8 8 C 1.53009 * 109.47004 * 269.10510 * 7 6 5 9 9 C 1.50691 * 115.55012 * 186.22108 * 8 7 6 10 10 H 1.08001 * 120.00417 * 144.72925 * 9 8 7 11 11 C 1.37877 * 120.00246 * 324.72773 * 9 8 7 12 12 N 1.31521 * 120.00097 * 350.76769 * 11 9 8 13 13 Si 1.86803 * 120.00206 * 170.76997 * 11 9 8 14 14 H 1.48502 * 109.46731 * 89.99971 * 13 11 9 15 15 H 1.48500 * 109.47256 * 209.99598 * 13 11 9 16 16 H 1.48497 * 109.47203 * 330.00154 * 13 11 9 17 17 C 1.52997 * 117.49600 * 40.55108 * 8 7 6 18 18 C 1.52999 * 117.49408 * 331.89001 * 8 7 6 19 19 C 1.38239 * 120.11788 * 0.02562 * 6 5 4 20 20 C 1.38165 * 120.05372 * 0.02595 * 19 6 5 21 21 C 1.50699 * 120.02971 * 179.97438 * 20 19 6 22 22 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47423 * 300.00779 * 1 2 3 24 24 H 1.09009 * 109.47200 * 60.00379 * 1 2 3 25 25 H 1.08000 * 120.02290 * 0.04082 * 4 3 2 26 26 H 1.07997 * 119.97313 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47563 * 29.10238 * 7 6 5 28 28 H 1.08997 * 109.47235 * 149.10606 * 7 6 5 29 29 H 0.96994 * 120.00040 * 185.01137 * 12 11 9 30 30 H 1.09000 * 117.50297 * 359.97438 * 17 8 7 31 31 H 1.09004 * 117.50062 * 145.02279 * 17 8 7 32 32 H 1.09005 * 117.49416 * 214.97235 * 18 8 7 33 33 H 1.08999 * 117.50544 * 359.97438 * 18 8 7 34 34 H 1.08003 * 119.97715 * 179.74355 * 19 6 5 35 35 H 1.09007 * 109.46961 * 89.99869 * 21 20 19 36 36 H 1.09001 * 109.46967 * 209.99752 * 21 20 19 37 37 H 1.08993 * 109.46941 * 330.00031 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 6 4.2383 5.4624 -1.4429 9 6 5.0487 6.7227 -1.6028 10 1 5.7359 6.8216 -2.4301 11 6 4.9130 7.7497 -0.6930 12 7 3.9530 7.7100 0.2052 13 14 6.0925 9.1976 -0.7359 14 1 5.5503 10.2512 -1.6311 15 1 6.2524 9.7467 0.6345 16 1 7.4122 8.7461 -1.2455 17 6 3.1322 5.1990 -2.4667 18 6 4.4177 4.3684 -2.4975 19 6 4.0560 2.5171 0.0000 20 6 3.4311 1.2848 -0.0005 21 6 4.2537 0.0221 -0.0005 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 0.2128 2.3204 -0.0003 26 1 1.3340 4.5114 -0.0011 27 1 3.3508 5.7500 0.4989 28 1 4.9365 4.9420 0.5275 29 1 3.8118 8.4648 0.7978 30 1 2.2251 4.7092 -2.1128 31 1 2.9910 5.9372 -3.2562 32 1 5.1217 4.5607 -3.3072 33 1 4.3566 3.3326 -2.1637 34 1 5.1345 2.5751 -0.0037 35 1 4.4517 -0.2826 1.0273 36 1 3.7065 -0.7680 -0.5147 37 1 5.1979 0.2036 -0.5139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:08 Heat of formation + Delta-G solvation = 2.264136 kcal Electronic energy + Delta-G solvation = -17804.688574 eV Core-core repulsion = 15126.814135 eV Total energy + Delta-G solvation = -2677.874439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.95770 -37.89466 -35.88738 -32.51505 -32.10755 -30.40835 -27.62396 -26.73210 -25.92227 -24.85149 -21.75903 -20.87606 -20.46360 -18.51756 -17.63034 -16.14947 -15.97854 -15.57860 -14.78548 -14.32298 -14.07881 -13.72909 -13.52526 -13.17148 -12.78237 -12.62121 -12.05138 -11.76898 -11.73664 -11.62677 -11.26465 -10.98924 -10.75843 -10.66536 -10.41760 -10.37505 -10.29857 -10.03485 -9.27762 -8.92654 -8.65269 -8.27555 -7.94205 -7.42550 -6.01856 -4.07272 1.81600 1.97623 3.27044 3.34677 3.38932 3.51857 4.25891 4.37059 5.04477 5.07398 5.16089 5.19756 5.29777 5.46598 5.54427 5.66434 5.76599 5.87890 5.90583 6.02137 6.10716 6.26298 6.28909 6.50557 6.59314 6.69000 6.80415 6.84127 6.95836 7.04850 7.10076 7.24382 7.32073 7.46131 7.68101 7.73939 7.75662 8.12450 8.46561 8.90294 9.52613 10.98248 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039552 B = 0.005579 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.751813 B = 5018.011460 C = 5179.849815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.099 3.901 4 C -0.204 4.204 5 C -0.084 4.084 6 C -0.080 4.080 7 C -0.043 4.043 8 C 0.065 3.935 9 C -0.488 4.488 10 H 0.060 0.940 11 C 0.070 3.930 12 N -0.882 5.882 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.208 4.208 18 C -0.218 4.218 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.100 4.100 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.053 0.947 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -11.901 1.503 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.055 3.945 4 C -0.223 4.223 5 C -0.102 4.102 6 C -0.081 4.081 7 C -0.080 4.080 8 C 0.065 3.935 9 C -0.526 4.526 10 H 0.078 0.922 11 C -0.133 4.133 12 N -0.519 5.519 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.245 4.245 18 C -0.255 4.255 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.156 4.156 22 H 0.111 0.889 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.133 0.867 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.854 -12.004 1.711 13.061 hybrid contribution 0.132 0.966 -0.211 0.998 sum -4.722 -11.039 1.499 12.099 Atomic orbital electron populations 1.22939 0.79342 1.03080 1.01151 1.85990 1.20537 1.27465 1.89560 1.18677 0.91711 0.83729 1.00433 1.21118 0.99228 0.92549 1.09424 1.20906 0.94600 0.96531 0.98176 1.20492 0.93495 0.97030 0.97035 1.20349 0.99865 0.90155 0.97646 1.18893 0.95353 0.92610 0.86673 1.20607 1.22702 0.99013 1.10249 0.92212 1.24980 0.95249 0.98236 0.94801 1.69830 1.30224 1.30575 1.21303 0.86561 0.81682 0.82314 0.77339 1.20685 1.21032 1.19751 1.23006 0.92220 1.03089 1.06233 1.23039 1.00997 0.96421 1.05042 1.20862 0.99751 0.90581 0.99284 1.19165 0.90430 0.95912 1.06662 1.20542 0.98703 0.94754 1.01631 0.88904 0.93036 0.93012 0.86344 0.85868 0.86687 0.92794 0.92828 0.91411 0.91099 0.91322 0.90779 0.85765 0.92008 0.91772 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.71 9.54 -19.42 -0.19 -4.89 16 3 C 0.10 1.64 6.66 -39.21 -0.26 1.37 16 4 C -0.20 -3.37 9.04 -39.44 -0.36 -3.73 16 5 C -0.08 -1.57 7.92 -39.61 -0.31 -1.88 16 6 C -0.08 -1.61 3.71 -104.60 -0.39 -2.00 16 7 C -0.04 -1.00 4.67 -27.88 -0.13 -1.13 16 8 C 0.07 1.62 2.38 -155.66 -0.37 1.25 16 9 C -0.49 -13.31 9.05 -34.44 -0.31 -13.62 16 10 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 11 C 0.07 1.87 5.27 -17.82 -0.09 1.78 16 12 N -0.88 -24.04 10.71 55.43 0.59 -23.44 16 13 Si 0.89 20.72 29.55 -169.99 -5.02 15.70 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C -0.21 -4.86 9.57 -26.69 -0.26 -5.12 16 18 C -0.22 -4.92 9.48 -26.69 -0.25 -5.18 16 19 C -0.09 -1.59 7.54 -39.61 -0.30 -1.89 16 20 C -0.12 -2.04 5.89 -104.47 -0.62 -2.65 16 21 C -0.10 -1.37 9.79 36.01 0.35 -1.02 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.05 0.52 7.66 -51.92 -0.40 0.12 16 25 H 0.12 1.64 6.30 -52.49 -0.33 1.31 16 26 H 0.12 2.29 8.05 -52.49 -0.42 1.87 16 27 H 0.12 2.93 5.95 -51.93 -0.31 2.62 16 28 H 0.05 1.29 8.09 -51.93 -0.42 0.87 16 29 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 30 H 0.07 1.51 6.04 -51.93 -0.31 1.19 16 31 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.58 5.63 -51.93 -0.29 1.29 16 34 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.06 0.85 7.53 -51.93 -0.39 0.46 16 37 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -28.34 299.68 -7.76 -36.09 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.35 Total: 4.54 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: -2.30 Total: -32.51 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.59 Total: -23.44 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.19 Total: -4.89 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.34 -7.76 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.358 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds