Wall clock time and date at job start Mon Mar 30 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99740 * 2 1 4 4 C 1.38752 * 120.06226 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94785 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05209 * 359.97347 * 5 4 3 7 7 C 1.50704 * 119.93989 * 180.02562 * 6 5 4 8 8 C 1.53009 * 109.47004 * 269.10510 * 7 6 5 9 9 C 1.50691 * 115.55012 * 186.22108 * 8 7 6 10 10 H 1.08001 * 120.00417 * 144.72925 * 9 8 7 11 11 C 1.37877 * 120.00246 * 324.72773 * 9 8 7 12 12 N 1.31521 * 120.00097 * 350.76769 * 11 9 8 13 13 Si 1.86803 * 120.00206 * 170.76997 * 11 9 8 14 14 H 1.48502 * 109.46731 * 89.99971 * 13 11 9 15 15 H 1.48500 * 109.47256 * 209.99598 * 13 11 9 16 16 H 1.48497 * 109.47203 * 330.00154 * 13 11 9 17 17 C 1.52997 * 117.49600 * 40.55108 * 8 7 6 18 18 C 1.52999 * 117.49408 * 331.89001 * 8 7 6 19 19 C 1.38239 * 120.11788 * 0.02562 * 6 5 4 20 20 C 1.38165 * 120.05372 * 0.02595 * 19 6 5 21 21 C 1.50699 * 120.02971 * 179.97438 * 20 19 6 22 22 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47423 * 300.00779 * 1 2 3 24 24 H 1.09009 * 109.47200 * 60.00379 * 1 2 3 25 25 H 1.08000 * 120.02290 * 0.04082 * 4 3 2 26 26 H 1.07997 * 119.97313 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.47563 * 29.10238 * 7 6 5 28 28 H 1.08997 * 109.47235 * 149.10606 * 7 6 5 29 29 H 0.96994 * 120.00040 * 185.01137 * 12 11 9 30 30 H 1.09000 * 117.50297 * 359.97438 * 17 8 7 31 31 H 1.09004 * 117.50062 * 145.02279 * 17 8 7 32 32 H 1.09005 * 117.49416 * 214.97235 * 18 8 7 33 33 H 1.08999 * 117.50544 * 359.97438 * 18 8 7 34 34 H 1.08003 * 119.97715 * 179.74355 * 19 6 5 35 35 H 1.09007 * 109.46961 * 89.99869 * 21 20 19 36 36 H 1.09001 * 109.46967 * 209.99752 * 21 20 19 37 37 H 1.08993 * 109.46941 * 330.00031 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 6 4.2383 5.4624 -1.4429 9 6 5.0487 6.7227 -1.6028 10 1 5.7359 6.8216 -2.4301 11 6 4.9130 7.7497 -0.6930 12 7 3.9530 7.7100 0.2052 13 14 6.0925 9.1976 -0.7359 14 1 5.5503 10.2512 -1.6311 15 1 6.2524 9.7467 0.6345 16 1 7.4122 8.7461 -1.2455 17 6 3.1322 5.1990 -2.4667 18 6 4.4177 4.3684 -2.4975 19 6 4.0560 2.5171 0.0000 20 6 3.4311 1.2848 -0.0005 21 6 4.2537 0.0221 -0.0005 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 0.2128 2.3204 -0.0003 26 1 1.3340 4.5114 -0.0011 27 1 3.3508 5.7500 0.4989 28 1 4.9365 4.9420 0.5275 29 1 3.8118 8.4648 0.7978 30 1 2.2251 4.7092 -2.1128 31 1 2.9910 5.9372 -3.2562 32 1 5.1217 4.5607 -3.3072 33 1 4.3566 3.3326 -2.1637 34 1 5.1345 2.5751 -0.0037 35 1 4.4517 -0.2826 1.0273 36 1 3.7065 -0.7680 -0.5147 37 1 5.1979 0.2036 -0.5139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:08 Heat of formation + Delta-G solvation = -11.341272 kcal Electronic energy + Delta-G solvation = -17805.278549 eV Core-core repulsion = 15126.814135 eV Total energy + Delta-G solvation = -2678.464414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25482 -39.36187 -37.45729 -34.21368 -33.74178 -31.87870 -28.67113 -28.12983 -27.66978 -26.47931 -23.23782 -22.51402 -21.99332 -20.33077 -18.82806 -18.12994 -17.20812 -16.67740 -16.62777 -15.85413 -15.74829 -15.10914 -14.80538 -14.48482 -14.23910 -13.99847 -13.66388 -13.29584 -13.01543 -12.85123 -12.78931 -12.73724 -12.47590 -12.35887 -12.10096 -11.96498 -11.74975 -11.58081 -11.15349 -10.88477 -10.56741 -9.90021 -9.61706 -8.79913 -8.04172 -6.17741 0.45683 0.59008 1.41822 1.44743 1.54646 2.42387 2.46243 2.86941 3.03357 3.70231 3.92949 3.95355 4.18897 4.35199 4.40982 4.43473 4.50644 4.54772 4.66535 4.72166 4.77432 4.79102 4.85915 4.87979 5.00433 5.01150 5.17460 5.27100 5.40277 5.44805 5.48255 5.58879 5.62465 5.70394 5.89518 5.99908 6.21426 6.43876 6.54891 6.84621 7.44636 8.93837 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039552 B = 0.005579 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.751813 B = 5018.011460 C = 5179.849815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.103 3.897 4 C -0.200 4.200 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.027 4.027 8 C 0.036 3.964 9 C -0.516 4.516 10 H 0.050 0.950 11 C 0.028 3.972 12 N -0.902 5.902 13 Si 0.954 3.046 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.270 1.270 17 C -0.204 4.204 18 C -0.198 4.198 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.097 4.097 22 H 0.122 0.878 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.147 0.853 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 -13.615 1.432 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.058 3.942 4 C -0.218 4.218 5 C -0.114 4.114 6 C -0.102 4.102 7 C -0.064 4.064 8 C 0.036 3.964 9 C -0.554 4.554 10 H 0.068 0.932 11 C -0.173 4.173 12 N -0.540 5.540 13 Si 0.780 3.220 14 H -0.202 1.202 15 H -0.205 1.205 16 H -0.195 1.195 17 C -0.242 4.242 18 C -0.235 4.235 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.153 4.153 22 H 0.140 0.860 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.164 0.836 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.425 -13.733 1.634 14.855 hybrid contribution 0.213 1.390 -0.185 1.418 sum -5.212 -12.343 1.449 13.476 Atomic orbital electron populations 1.23298 0.76989 1.05401 1.01872 1.85997 1.22910 1.26181 1.89048 1.18816 0.91887 0.84514 0.99011 1.21330 1.00701 0.91569 1.08243 1.20882 0.94047 0.97373 0.99078 1.20209 0.94193 0.95860 0.99940 1.19977 0.98545 0.91657 0.96249 1.19034 0.96358 0.92956 0.88079 1.20887 1.23353 1.00631 1.10504 0.93210 1.25664 0.96530 1.00611 0.94454 1.69975 1.31196 1.31200 1.21597 0.85615 0.79690 0.79291 0.77441 1.20243 1.20491 1.19486 1.22944 0.92812 1.03128 1.05303 1.22994 1.00113 0.96593 1.03784 1.20873 0.99856 0.90724 0.99659 1.19480 0.91227 0.96374 1.05550 1.20584 0.98712 0.93333 1.02707 0.85961 0.92150 0.92377 0.83582 0.86655 0.89387 0.94746 0.92759 0.90348 0.92054 0.91278 0.89298 0.85583 0.90723 0.91065 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.49 9.54 -92.39 -0.88 -9.38 16 3 C 0.10 3.15 6.66 22.51 0.15 3.30 16 4 C -0.20 -6.20 9.04 22.36 0.20 -5.99 16 5 C -0.10 -3.54 7.92 22.25 0.18 -3.37 16 6 C -0.10 -4.12 3.71 -19.85 -0.07 -4.19 16 7 C -0.03 -1.29 4.67 29.85 0.14 -1.15 16 8 C 0.04 1.83 2.38 -52.93 -0.13 1.70 16 9 C -0.52 -28.82 9.05 25.60 0.23 -28.59 16 10 H 0.05 2.78 7.83 -2.91 -0.02 2.76 16 11 C 0.03 1.52 5.27 84.65 0.45 1.97 16 12 N -0.90 -50.39 10.71 21.45 0.23 -50.16 16 13 Si 0.95 43.06 29.55 68.60 2.03 45.08 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 17 C -0.20 -9.63 9.57 30.62 0.29 -9.34 16 18 C -0.20 -8.91 9.48 30.62 0.29 -8.62 16 19 C -0.09 -3.35 7.54 22.25 0.17 -3.18 16 20 C -0.13 -3.98 5.89 -19.77 -0.12 -4.10 16 21 C -0.10 -2.41 9.79 71.24 0.70 -1.71 16 22 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 24 H 0.06 0.95 7.66 -2.38 -0.02 0.93 16 25 H 0.15 3.61 6.30 -2.91 -0.02 3.59 16 26 H 0.12 4.36 8.05 -2.91 -0.02 4.34 16 27 H 0.09 4.69 5.95 -2.39 -0.01 4.68 16 28 H 0.03 1.71 8.09 -2.39 -0.02 1.69 16 29 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 30 H 0.08 3.49 6.04 -2.39 -0.01 3.48 16 31 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 32 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.09 3.72 5.63 -2.39 -0.01 3.71 16 34 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 36 H 0.07 1.67 7.53 -2.39 -0.02 1.66 16 37 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -60.78 299.68 6.01 -54.77 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 1.05 Total: 21.52 kcal Atomic # 6 Polarization: -65.43 SS G_CDS: 3.59 Total: -61.84 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.23 Total: -50.16 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.88 Total: -9.38 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -60.78 6.01 -54.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.424 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds