Wall clock time and date at job start Mon Mar 30 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00085 * 2 1 4 4 C 1.38759 * 120.05507 * 270.20512 * 3 2 1 5 5 C 1.50702 * 120.02953 * 0.02621 * 4 3 2 6 6 C 1.38128 * 119.93954 * 180.27713 * 4 3 2 7 7 C 1.38282 * 120.06030 * 359.77385 * 6 4 3 8 8 C 1.38246 * 120.10954 * 359.97438 * 7 6 4 9 9 C 1.38172 * 120.05527 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.02473 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46907 * 267.12874 * 10 9 8 12 12 C 1.50700 * 115.54727 * 174.77463 * 11 10 9 13 13 H 1.08003 * 119.99583 * 215.52552 * 12 11 10 14 14 C 1.37874 * 120.00166 * 35.52433 * 12 11 10 15 15 N 1.31514 * 119.99842 * 7.04070 * 14 12 11 16 16 Si 1.86797 * 119.99995 * 187.04292 * 14 12 11 17 17 H 1.48503 * 109.47381 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47237 * 300.00080 * 16 14 12 19 19 H 1.48507 * 109.47304 * 59.99976 * 16 14 12 20 20 C 1.52996 * 117.49816 * 320.44480 * 11 10 9 21 21 C 1.52998 * 117.49838 * 29.10465 * 11 10 9 22 22 H 1.09003 * 109.46655 * 59.99848 * 1 2 3 23 23 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47009 * 300.00351 * 1 2 3 25 25 H 1.08994 * 109.46766 * 270.25178 * 5 4 3 26 26 H 1.08995 * 109.46701 * 30.25383 * 5 4 3 27 27 H 1.08997 * 109.46844 * 150.25283 * 5 4 3 28 28 H 1.08004 * 119.96578 * 179.74697 * 6 4 3 29 29 H 1.07995 * 119.94831 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.97555 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47228 * 147.13433 * 10 9 8 32 32 H 1.08997 * 109.47332 * 27.13218 * 10 9 8 33 33 H 0.97004 * 119.99620 * 174.99851 * 15 14 12 34 34 H 1.09004 * 117.49769 * 214.99865 * 20 11 10 35 35 H 1.08993 * 117.50370 * 0.02562 * 20 11 10 36 36 H 1.08999 * 117.50052 * 359.97438 * 21 11 10 37 37 H 1.08998 * 117.49778 * 144.99144 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3577 1.8320 -1.2010 5 6 2.0118 1.1647 -2.5072 6 6 2.9900 3.0601 -1.1983 7 6 3.3081 3.6726 0.0000 8 6 2.9940 3.0582 1.1979 9 6 2.3615 1.8298 1.2005 10 6 2.0199 1.1603 2.5068 11 6 3.1565 0.2187 2.9098 12 6 3.0128 -0.4322 4.2614 13 1 3.8868 -0.6111 4.8702 14 6 1.7658 -0.7994 4.7207 15 7 0.7204 -0.7101 3.9277 16 14 1.5610 -1.4235 6.4694 17 1 0.1330 -1.7487 6.7149 18 1 2.3867 -2.6429 6.6597 19 1 2.0004 -0.3743 7.4241 20 6 3.8259 -0.5957 1.8010 21 6 4.5693 0.5772 2.4449 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.8420 0.5335 -2.8237 26 1 1.1191 0.5530 -2.3774 27 1 1.8240 1.9252 -3.2651 28 1 3.2364 3.5420 -2.1328 29 1 3.8021 4.6330 0.0000 30 1 3.2431 3.5388 2.1324 31 1 1.0984 0.5894 2.3924 32 1 1.8845 1.9178 3.2788 33 1 -0.1434 -1.0359 4.2255 34 1 4.1625 -1.6024 2.0491 35 1 3.4569 -0.4604 0.7844 36 1 4.6891 1.4837 1.8516 37 1 5.3950 0.3424 3.1166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259702096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:10 Heat of formation + Delta-G solvation = 7.128560 kcal Electronic energy + Delta-G solvation = -18486.602673 eV Core-core repulsion = 15808.939171 eV Total energy + Delta-G solvation = -2677.663502 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86523 -36.75070 -36.32534 -32.49875 -32.01671 -30.22260 -27.47392 -26.23504 -25.69095 -25.04553 -21.48841 -20.91051 -20.48081 -18.52408 -17.01160 -16.11405 -15.84729 -15.14402 -14.88728 -14.50755 -13.64319 -13.52952 -13.37758 -12.97914 -12.77739 -12.30963 -12.11379 -11.73415 -11.48255 -11.38900 -11.11594 -10.93966 -10.78871 -10.68339 -10.51391 -10.10179 -9.99572 -9.36292 -9.24434 -8.82094 -8.60255 -8.06235 -7.91535 -7.80193 -5.95963 -4.02799 1.72528 1.87870 3.30621 3.35091 3.38620 4.01558 4.39662 4.54446 5.10765 5.21154 5.24963 5.52972 5.58220 5.69433 5.73435 5.84682 5.92099 5.96048 6.00722 6.12810 6.19983 6.33491 6.37446 6.53700 6.66827 6.71346 6.87108 6.89864 6.98750 7.03882 7.21000 7.29643 7.39124 7.56473 7.68510 7.77814 8.16402 8.23226 8.51840 8.94172 9.56600 11.02556 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.007721 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.528755 B = 3625.486860 C = 4021.766907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.319 6.319 3 C 0.097 3.903 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.127 4.127 8 C -0.119 4.119 9 C -0.068 4.068 10 C -0.045 4.045 11 C 0.069 3.931 12 C -0.487 4.487 13 H 0.059 0.941 14 C 0.070 3.930 15 N -0.880 5.880 16 Si 0.894 3.106 17 H -0.287 1.287 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.200 4.200 21 C -0.223 4.223 22 H 0.031 0.969 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.050 0.950 33 H 0.260 0.740 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 5.719 -9.392 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.235 6.235 3 C 0.053 3.947 4 C -0.113 4.113 5 C -0.161 4.161 6 C -0.150 4.150 7 C -0.145 4.145 8 C -0.137 4.137 9 C -0.069 4.069 10 C -0.082 4.082 11 C 0.069 3.931 12 C -0.524 4.524 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.722 3.278 17 H -0.212 1.212 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.238 4.238 21 C -0.260 4.260 22 H 0.049 0.951 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.743 5.556 -9.359 10.909 hybrid contribution -0.044 -0.189 0.890 0.911 sum -0.787 5.367 -8.469 10.058 Atomic orbital electron populations 1.22846 0.79905 1.02753 0.99737 1.86118 1.19022 1.24279 1.94102 1.18345 0.98443 0.86687 0.91183 1.20139 1.01196 0.95115 0.94896 1.20631 1.01964 0.99914 0.93635 1.20687 1.01426 0.95216 0.97693 1.21024 1.01076 0.99813 0.92615 1.21029 0.99427 0.95478 0.97807 1.20966 0.95396 0.93401 0.97096 1.20421 1.02426 0.96870 0.88523 1.18768 0.86659 0.94800 0.92885 1.20588 0.92777 1.39080 1.00002 0.92331 1.24962 0.95780 0.95176 0.97345 1.69806 1.00373 1.45992 1.35577 0.86623 0.76982 0.79241 0.84941 1.21227 1.20318 1.20210 1.23036 1.07409 0.94324 0.98988 1.23048 0.98593 0.99056 1.05346 0.95090 0.89405 0.92926 0.91449 0.91650 0.92302 0.86713 0.86723 0.86163 0.85710 0.93179 0.92961 0.91388 0.90228 0.91149 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.41 101.05 1.05 1.76 16 2 O -0.32 -6.44 7.59 -19.41 -0.15 -6.59 16 3 C 0.10 1.90 4.21 -39.22 -0.17 1.73 16 4 C -0.11 -1.89 5.89 -104.47 -0.62 -2.51 16 5 C -0.10 -1.43 9.79 36.01 0.35 -1.08 16 6 C -0.13 -2.01 9.70 -39.61 -0.38 -2.40 16 7 C -0.13 -1.98 10.04 -39.56 -0.40 -2.38 16 8 C -0.12 -2.17 8.17 -39.60 -0.32 -2.49 16 9 C -0.07 -1.41 3.71 -104.47 -0.39 -1.79 16 10 C -0.05 -1.09 4.43 -27.88 -0.12 -1.21 16 11 C 0.07 1.77 2.39 -155.66 -0.37 1.40 16 12 C -0.49 -13.54 9.05 -34.44 -0.31 -13.85 16 13 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 14 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 15 N -0.88 -23.96 10.61 55.43 0.59 -23.37 16 16 Si 0.89 20.97 29.55 -169.99 -5.02 15.94 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 C -0.20 -4.93 9.46 -26.70 -0.25 -5.19 16 21 C -0.22 -5.23 9.51 -26.70 -0.25 -5.49 16 22 H 0.03 0.44 7.23 -51.93 -0.38 0.06 16 23 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 24 H 0.05 0.96 7.20 -51.93 -0.37 0.58 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.89 6.31 -51.93 -0.33 0.56 16 27 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 31 H 0.13 3.20 4.17 -51.93 -0.22 2.98 16 32 H 0.05 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 34 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.08 1.93 4.89 -51.93 -0.25 1.68 16 36 H 0.07 1.55 5.87 -51.93 -0.30 1.25 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -28.71 295.83 -7.60 -36.30 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.20 Total: 4.94 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -2.28 Total: -31.70 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.59 Total: -23.37 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.15 Total: -6.59 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.71 -7.60 -36.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.433 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds