Wall clock time and date at job start Mon Mar 30 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00085 * 2 1 4 4 C 1.38759 * 120.05507 * 270.20512 * 3 2 1 5 5 C 1.50702 * 120.02953 * 0.02621 * 4 3 2 6 6 C 1.38128 * 119.93954 * 180.27713 * 4 3 2 7 7 C 1.38282 * 120.06030 * 359.77385 * 6 4 3 8 8 C 1.38246 * 120.10954 * 359.97438 * 7 6 4 9 9 C 1.38172 * 120.05527 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.02473 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46907 * 267.12874 * 10 9 8 12 12 C 1.50700 * 115.54727 * 174.77463 * 11 10 9 13 13 H 1.08003 * 119.99583 * 215.52552 * 12 11 10 14 14 C 1.37874 * 120.00166 * 35.52433 * 12 11 10 15 15 N 1.31514 * 119.99842 * 7.04070 * 14 12 11 16 16 Si 1.86797 * 119.99995 * 187.04292 * 14 12 11 17 17 H 1.48503 * 109.47381 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47237 * 300.00080 * 16 14 12 19 19 H 1.48507 * 109.47304 * 59.99976 * 16 14 12 20 20 C 1.52996 * 117.49816 * 320.44480 * 11 10 9 21 21 C 1.52998 * 117.49838 * 29.10465 * 11 10 9 22 22 H 1.09003 * 109.46655 * 59.99848 * 1 2 3 23 23 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47009 * 300.00351 * 1 2 3 25 25 H 1.08994 * 109.46766 * 270.25178 * 5 4 3 26 26 H 1.08995 * 109.46701 * 30.25383 * 5 4 3 27 27 H 1.08997 * 109.46844 * 150.25283 * 5 4 3 28 28 H 1.08004 * 119.96578 * 179.74697 * 6 4 3 29 29 H 1.07995 * 119.94831 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.97555 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47228 * 147.13433 * 10 9 8 32 32 H 1.08997 * 109.47332 * 27.13218 * 10 9 8 33 33 H 0.97004 * 119.99620 * 174.99851 * 15 14 12 34 34 H 1.09004 * 117.49769 * 214.99865 * 20 11 10 35 35 H 1.08993 * 117.50370 * 0.02562 * 20 11 10 36 36 H 1.08999 * 117.50052 * 359.97438 * 21 11 10 37 37 H 1.08998 * 117.49778 * 144.99144 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3577 1.8320 -1.2010 5 6 2.0118 1.1647 -2.5072 6 6 2.9900 3.0601 -1.1983 7 6 3.3081 3.6726 0.0000 8 6 2.9940 3.0582 1.1979 9 6 2.3615 1.8298 1.2005 10 6 2.0199 1.1603 2.5068 11 6 3.1565 0.2187 2.9098 12 6 3.0128 -0.4322 4.2614 13 1 3.8868 -0.6111 4.8702 14 6 1.7658 -0.7994 4.7207 15 7 0.7204 -0.7101 3.9277 16 14 1.5610 -1.4235 6.4694 17 1 0.1330 -1.7487 6.7149 18 1 2.3867 -2.6429 6.6597 19 1 2.0004 -0.3743 7.4241 20 6 3.8259 -0.5957 1.8010 21 6 4.5693 0.5772 2.4449 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.8420 0.5335 -2.8237 26 1 1.1191 0.5530 -2.3774 27 1 1.8240 1.9252 -3.2651 28 1 3.2364 3.5420 -2.1328 29 1 3.8021 4.6330 0.0000 30 1 3.2431 3.5388 2.1324 31 1 1.0984 0.5894 2.3924 32 1 1.8845 1.9178 3.2788 33 1 -0.1434 -1.0359 4.2255 34 1 4.1625 -1.6024 2.0491 35 1 3.4569 -0.4604 0.7844 36 1 4.6891 1.4837 1.8516 37 1 5.3950 0.3424 3.1166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:09 Heat of formation + Delta-G solvation = -7.044844 kcal Electronic energy + Delta-G solvation = -18487.217278 eV Core-core repulsion = 15808.939171 eV Total energy + Delta-G solvation = -2678.278107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29262 -38.40983 -37.86845 -34.25202 -33.68602 -31.62498 -28.90668 -27.90168 -27.21758 -26.72135 -23.08595 -22.56959 -21.99350 -20.37912 -18.43487 -18.08167 -17.23883 -16.67088 -16.64689 -16.01146 -15.44547 -15.02535 -14.67197 -14.37973 -14.15737 -13.81845 -13.58122 -13.36427 -13.03794 -12.85220 -12.80254 -12.59946 -12.54515 -12.30726 -12.09858 -11.92301 -11.70627 -11.24741 -10.97959 -10.59436 -10.53152 -9.88372 -9.36094 -9.27407 -8.00765 -6.16884 0.40866 0.53433 1.41892 1.43419 1.51101 2.41948 2.68999 3.04571 3.17777 3.71541 4.00701 4.05905 4.23659 4.40661 4.44012 4.48938 4.55963 4.65097 4.70701 4.73174 4.81953 4.83371 4.87269 4.92788 4.99184 5.10141 5.22917 5.30107 5.36504 5.50320 5.61735 5.64441 5.65655 5.72570 5.90780 6.02170 6.26051 6.44881 6.81032 6.85308 7.45053 8.94960 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.007721 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.528755 B = 3625.486860 C = 4021.766907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.343 6.343 3 C 0.077 3.923 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.122 4.122 7 C -0.119 4.119 8 C -0.132 4.132 9 C -0.098 4.098 10 C -0.032 4.032 11 C 0.045 3.955 12 C -0.521 4.521 13 H 0.048 0.952 14 C 0.028 3.972 15 N -0.894 5.894 16 Si 0.956 3.044 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.273 1.273 20 C -0.199 4.199 21 C -0.203 4.203 22 H 0.060 0.940 23 H 0.095 0.905 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 7.013 -11.109 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.260 6.260 3 C 0.034 3.966 4 C -0.118 4.118 5 C -0.160 4.160 6 C -0.139 4.139 7 C -0.136 4.136 8 C -0.150 4.150 9 C -0.098 4.098 10 C -0.069 4.069 11 C 0.044 3.956 12 C -0.558 4.558 13 H 0.066 0.934 14 C -0.173 4.173 15 N -0.532 5.532 16 Si 0.781 3.219 17 H -0.204 1.204 18 H -0.202 1.202 19 H -0.198 1.198 20 C -0.237 4.237 21 C -0.240 4.240 22 H 0.078 0.922 23 H 0.114 0.886 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.304 6.854 -11.083 13.035 hybrid contribution -0.181 -0.553 1.356 1.475 sum -0.484 6.301 -9.727 11.600 Atomic orbital electron populations 1.22909 0.78849 1.03383 0.99973 1.86053 1.20318 1.25317 1.94276 1.18577 0.99277 0.86796 0.91974 1.20508 1.00617 0.95666 0.94995 1.20689 1.01893 1.00651 0.92722 1.21185 0.99282 0.94279 0.99197 1.21402 0.99881 1.00820 0.91546 1.21134 0.99751 0.94825 0.99293 1.20748 0.98275 0.94948 0.95848 1.20049 1.01015 0.95804 0.90043 1.18912 0.88462 0.95805 0.92378 1.20868 0.92974 1.40584 1.01403 0.93400 1.25661 0.95405 0.95302 1.00897 1.69962 1.00519 1.45847 1.36838 0.85664 0.77140 0.78628 0.80454 1.20384 1.20151 1.19779 1.22925 1.07822 0.93947 0.98988 1.23006 0.97409 0.98966 1.04630 0.92193 0.88643 0.95208 0.91041 0.92065 0.89249 0.82708 0.83122 0.86198 0.87930 0.95456 0.92860 0.92740 0.89818 0.89531 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.41 113.37 1.18 2.65 16 2 O -0.34 -13.97 7.59 -92.38 -0.70 -14.67 16 3 C 0.08 2.97 4.21 22.51 0.09 3.07 16 4 C -0.12 -3.61 5.89 -19.77 -0.12 -3.73 16 5 C -0.10 -2.47 9.79 71.24 0.70 -1.77 16 6 C -0.12 -3.18 9.70 22.25 0.22 -2.96 16 7 C -0.12 -3.28 10.04 22.28 0.22 -3.05 16 8 C -0.13 -4.65 8.17 22.26 0.18 -4.47 16 9 C -0.10 -4.06 3.71 -19.77 -0.07 -4.14 16 10 C -0.03 -1.59 4.43 29.85 0.13 -1.45 16 11 C 0.04 2.36 2.39 -52.93 -0.13 2.24 16 12 C -0.52 -29.92 9.05 25.60 0.23 -29.69 16 13 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 14 C 0.03 1.56 5.30 84.65 0.45 2.01 16 15 N -0.89 -50.19 10.61 21.45 0.23 -49.96 16 16 Si 0.96 43.77 29.55 68.60 2.03 45.80 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.20 -10.04 9.46 30.62 0.29 -9.75 16 21 C -0.20 -9.59 9.51 30.62 0.29 -9.30 16 22 H 0.06 1.66 7.23 -2.39 -0.02 1.64 16 23 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 24 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.51 6.31 -2.39 -0.02 1.50 16 27 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 28 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.10 5.54 4.17 -2.39 -0.01 5.53 16 32 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 33 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 34 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.08 4.14 4.89 -2.39 -0.01 4.12 16 36 H 0.09 3.77 5.87 -2.39 -0.01 3.76 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -63.37 295.83 6.28 -57.09 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.06 Total: 22.10 kcal Atomic # 6 Polarization: -64.02 SS G_CDS: 3.67 Total: -60.35 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.23 Total: -49.96 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.70 Total: -14.67 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.37 6.28 -57.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.042 kcal (2) G-P(sol) polarization free energy of solvation -63.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds