Wall clock time and date at job start Mon Mar 30 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99976 * 2 1 4 4 H 1.09002 * 110.72761 * 330.69718 * 3 2 1 5 5 C 1.54346 * 110.82342 * 94.10255 * 3 2 1 6 6 C 1.51363 * 105.17516 * 144.77726 * 5 3 2 7 7 C 1.38261 * 109.75078 * 342.80788 * 6 5 3 8 8 C 1.38450 * 119.85126 * 179.97438 * 7 6 5 9 9 C 1.38155 * 120.21372 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.03017 * 180.02562 * 9 8 7 11 11 C 1.38211 * 119.93477 * 359.97438 * 9 8 7 12 12 C 1.38148 * 119.93558 * 0.02562 * 11 9 8 13 13 C 1.50701 * 119.89446 * 180.02562 * 12 11 9 14 14 C 1.51897 * 109.79985 * 359.97438 * 7 6 5 15 15 H 1.08999 * 110.48242 * 136.08172 * 14 7 6 16 16 C 1.50698 * 110.36524 * 258.39261 * 14 7 6 17 17 H 1.08001 * 119.99999 * 115.47630 * 16 14 7 18 18 C 1.37879 * 120.00396 * 295.47702 * 16 14 7 19 19 N 1.31511 * 120.00033 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00169 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46967 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46978 * 119.99793 * 20 18 16 23 23 H 1.48497 * 109.47138 * 240.00243 * 20 18 16 24 24 H 1.08990 * 109.47108 * 299.99969 * 1 2 3 25 25 H 1.08998 * 109.46880 * 60.00481 * 1 2 3 26 26 H 1.09004 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.09002 * 110.29797 * 263.70513 * 5 3 2 28 28 H 1.09001 * 110.29982 * 25.84900 * 5 3 2 29 29 H 1.08000 * 119.89660 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47438 * 269.97496 * 10 9 8 31 31 H 1.08995 * 109.47338 * 29.98037 * 10 9 8 32 32 H 1.09004 * 109.46642 * 149.97407 * 10 9 8 33 33 H 1.07998 * 120.03390 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.47028 * 269.97783 * 13 12 11 35 35 H 1.08997 * 109.47037 * 29.97523 * 13 12 11 36 36 H 1.08996 * 109.47292 * 149.97628 * 13 12 11 37 37 H 0.96997 * 120.00401 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3550 2.0194 -0.4990 5 6 2.3277 1.7647 1.4389 6 6 3.6029 2.5721 1.3249 7 6 4.2228 2.2988 0.1197 8 6 5.4131 2.9287 -0.2016 9 6 5.9829 3.8286 0.6783 10 6 7.2783 4.5124 0.3242 11 6 5.3633 4.1019 1.8831 12 6 4.1755 3.4742 2.2054 13 6 3.5004 3.7733 3.5191 14 6 3.4046 1.2851 -0.6615 15 1 3.3309 1.5797 -1.7083 16 6 4.0188 -0.0862 -0.5452 17 1 3.4790 -0.8794 -0.0493 18 6 5.2698 -0.3282 -1.0718 19 7 5.9270 0.6375 -1.6761 20 14 6.0308 -2.0281 -0.9283 21 1 5.0951 -2.9303 -0.2101 22 1 6.2957 -2.5681 -2.2860 23 1 7.3067 -1.9372 -0.1740 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.5196 2.3863 1.8244 28 1 2.4833 0.9013 2.0858 29 1 5.8977 2.7161 -1.1430 30 1 8.1153 3.9127 0.6816 31 1 7.3467 4.6233 -0.7580 32 1 7.3098 5.4961 0.7928 33 1 5.8075 4.8047 2.5723 34 1 3.8616 3.0807 4.2793 35 1 3.7291 4.7954 3.8208 36 1 2.4220 3.6602 3.4075 37 1 6.8069 0.4672 -2.0469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259704530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:27 Heat of formation + Delta-G solvation = -32.224993 kcal Electronic energy + Delta-G solvation = -18267.556655 eV Core-core repulsion = 15588.186655 eV Total energy + Delta-G solvation = -2679.370000 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41596 -37.16664 -34.41567 -33.09533 -31.76468 -29.13630 -27.74653 -26.53261 -25.90032 -24.63241 -23.59473 -20.70864 -19.22676 -19.07109 -16.72242 -15.48843 -15.14926 -14.77414 -14.46054 -14.14591 -13.81570 -13.44927 -13.21067 -12.74126 -12.47011 -12.23475 -12.15036 -11.93981 -11.91399 -11.31723 -11.14144 -11.11304 -10.89794 -10.77470 -10.53673 -10.30623 -10.02820 -9.66862 -9.59805 -9.09901 -8.66994 -8.38909 -7.41528 -7.28304 -5.96490 -3.99533 2.36632 2.51572 3.33809 3.41393 3.47628 4.46595 4.57666 4.79316 5.29497 5.37046 5.53502 5.64649 5.70103 5.78940 5.82574 5.86997 5.93349 5.96774 6.02419 6.05327 6.13786 6.18874 6.25524 6.33397 6.42357 6.60011 6.67297 6.79138 6.95655 7.09880 7.31552 7.46177 7.56358 7.68993 7.93323 8.03551 8.08330 8.21841 8.43907 9.06854 9.63081 11.08091 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.011693 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.996020 B = 2393.956183 C = 3755.380342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.089 3.911 4 H 0.051 0.949 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.025 4.025 8 C -0.082 4.082 9 C -0.109 4.109 10 C -0.101 4.101 11 C -0.147 4.147 12 C -0.093 4.093 13 C -0.103 4.103 14 C 0.080 3.920 15 H 0.041 0.959 16 C -0.482 4.482 17 H 0.074 0.926 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.029 0.971 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 5.656 4.959 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.032 3.968 4 H 0.069 0.931 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.025 4.025 8 C -0.100 4.100 9 C -0.109 4.109 10 C -0.158 4.158 11 C -0.165 4.165 12 C -0.093 4.093 13 C -0.160 4.160 14 C 0.062 3.938 15 H 0.058 0.942 16 C -0.520 4.520 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.213 1.213 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.271 5.503 4.864 8.497 hybrid contribution 0.431 -0.701 0.232 0.855 sum -3.840 4.803 5.097 7.987 Atomic orbital electron populations 1.22701 0.83855 1.01607 0.98846 1.88151 1.16838 1.27496 1.94594 1.22843 0.96415 0.83075 0.94504 0.93079 1.21323 0.94106 0.98219 0.98654 1.20213 0.97763 0.98198 0.96025 1.21086 0.94535 0.91978 0.94942 1.21163 0.94477 0.93223 1.01128 1.19797 0.96921 0.99043 0.95168 1.20627 0.95006 0.98737 1.01409 1.20421 0.96268 1.02748 0.97096 1.19114 0.95955 0.98458 0.95736 1.20642 0.99840 1.00580 0.94954 1.18531 0.86822 0.94115 0.94351 0.94151 1.20974 1.01095 0.94116 1.35780 0.90790 1.24967 0.97110 0.96900 0.95203 1.69829 1.13475 1.31425 1.37967 0.86488 0.79030 0.84650 0.77599 1.19674 1.21141 1.21275 0.95199 0.94869 0.90568 0.92992 0.90267 0.83481 0.92251 0.92054 0.92905 0.87833 0.92273 0.92728 0.92426 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.87 101.05 1.10 1.52 16 2 O -0.35 -7.47 8.67 -35.23 -0.31 -7.77 16 3 C 0.09 1.90 3.36 -25.32 -0.08 1.82 16 4 H 0.05 0.99 7.85 -51.93 -0.41 0.58 16 5 C -0.09 -1.71 6.01 -26.85 -0.16 -1.87 16 6 C -0.12 -2.65 6.00 -104.21 -0.63 -3.28 16 7 C -0.02 -0.60 5.19 -103.94 -0.54 -1.14 16 8 C -0.08 -1.94 8.64 -39.53 -0.34 -2.28 16 9 C -0.11 -2.24 5.88 -104.66 -0.62 -2.85 16 10 C -0.10 -1.68 10.01 36.00 0.36 -1.32 16 11 C -0.15 -2.83 9.35 -39.62 -0.37 -3.20 16 12 C -0.09 -1.81 5.88 -104.57 -0.62 -2.42 16 13 C -0.10 -1.59 9.87 36.01 0.36 -1.23 16 14 C 0.08 2.02 2.76 -91.63 -0.25 1.77 16 15 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.48 -13.30 8.18 -34.44 -0.28 -13.59 16 17 H 0.07 2.10 6.65 -52.49 -0.35 1.75 16 18 C 0.06 1.63 5.34 -17.82 -0.10 1.53 16 19 N -0.89 -24.61 10.03 55.43 0.56 -24.06 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.89 7.62 -51.93 -0.40 0.49 16 28 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 29 H 0.15 3.72 6.12 -52.49 -0.32 3.40 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.06 0.83 7.29 -51.93 -0.38 0.45 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -29.13 299.97 -8.04 -37.18 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.62 Total: -0.07 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.17 Total: -26.54 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.56 Total: -24.06 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.31 Total: -7.77 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.13 -8.04 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.951 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds