Wall clock time and date at job start Mon Mar 30 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99976 * 2 1 4 4 H 1.09002 * 110.72761 * 330.69718 * 3 2 1 5 5 C 1.54346 * 110.82342 * 94.10255 * 3 2 1 6 6 C 1.51363 * 105.17516 * 144.77726 * 5 3 2 7 7 C 1.38261 * 109.75078 * 342.80788 * 6 5 3 8 8 C 1.38450 * 119.85126 * 179.97438 * 7 6 5 9 9 C 1.38155 * 120.21372 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.03017 * 180.02562 * 9 8 7 11 11 C 1.38211 * 119.93477 * 359.97438 * 9 8 7 12 12 C 1.38148 * 119.93558 * 0.02562 * 11 9 8 13 13 C 1.50701 * 119.89446 * 180.02562 * 12 11 9 14 14 C 1.51897 * 109.79985 * 359.97438 * 7 6 5 15 15 H 1.08999 * 110.48242 * 136.08172 * 14 7 6 16 16 C 1.50698 * 110.36524 * 258.39261 * 14 7 6 17 17 H 1.08001 * 119.99999 * 115.47630 * 16 14 7 18 18 C 1.37879 * 120.00396 * 295.47702 * 16 14 7 19 19 N 1.31511 * 120.00033 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00169 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46967 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46978 * 119.99793 * 20 18 16 23 23 H 1.48497 * 109.47138 * 240.00243 * 20 18 16 24 24 H 1.08990 * 109.47108 * 299.99969 * 1 2 3 25 25 H 1.08998 * 109.46880 * 60.00481 * 1 2 3 26 26 H 1.09004 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.09002 * 110.29797 * 263.70513 * 5 3 2 28 28 H 1.09001 * 110.29982 * 25.84900 * 5 3 2 29 29 H 1.08000 * 119.89660 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47438 * 269.97496 * 10 9 8 31 31 H 1.08995 * 109.47338 * 29.98037 * 10 9 8 32 32 H 1.09004 * 109.46642 * 149.97407 * 10 9 8 33 33 H 1.07998 * 120.03390 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.47028 * 269.97783 * 13 12 11 35 35 H 1.08997 * 109.47037 * 29.97523 * 13 12 11 36 36 H 1.08996 * 109.47292 * 149.97628 * 13 12 11 37 37 H 0.96997 * 120.00401 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3550 2.0194 -0.4990 5 6 2.3277 1.7647 1.4389 6 6 3.6029 2.5721 1.3249 7 6 4.2228 2.2988 0.1197 8 6 5.4131 2.9287 -0.2016 9 6 5.9829 3.8286 0.6783 10 6 7.2783 4.5124 0.3242 11 6 5.3633 4.1019 1.8831 12 6 4.1755 3.4742 2.2054 13 6 3.5004 3.7733 3.5191 14 6 3.4046 1.2851 -0.6615 15 1 3.3309 1.5797 -1.7083 16 6 4.0188 -0.0862 -0.5452 17 1 3.4790 -0.8794 -0.0493 18 6 5.2698 -0.3282 -1.0718 19 7 5.9270 0.6375 -1.6761 20 14 6.0308 -2.0281 -0.9283 21 1 5.0951 -2.9303 -0.2101 22 1 6.2957 -2.5681 -2.2860 23 1 7.3067 -1.9372 -0.1740 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.5196 2.3863 1.8244 28 1 2.4833 0.9013 2.0858 29 1 5.8977 2.7161 -1.1430 30 1 8.1153 3.9127 0.6816 31 1 7.3467 4.6233 -0.7580 32 1 7.3098 5.4961 0.7928 33 1 5.8075 4.8047 2.5723 34 1 3.8616 3.0807 4.2793 35 1 3.7291 4.7954 3.8208 36 1 2.4220 3.6602 3.4075 37 1 6.8069 0.4672 -2.0469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259704530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:27 Heat of formation + Delta-G solvation = -47.500596 kcal Electronic energy + Delta-G solvation = -18268.219055 eV Core-core repulsion = 15588.186655 eV Total energy + Delta-G solvation = -2680.032400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04241 -38.71325 -36.06800 -34.79813 -33.52262 -30.66359 -29.53748 -27.88372 -27.33950 -26.21364 -25.43259 -22.26956 -20.96909 -20.66581 -18.58784 -17.14678 -16.89737 -16.42210 -16.22252 -15.67378 -15.31236 -14.86234 -14.71309 -14.27991 -14.07798 -13.73939 -13.66628 -13.39587 -13.29235 -12.96831 -12.87535 -12.61199 -12.55277 -12.49931 -12.10644 -12.01185 -11.63883 -11.45406 -11.29959 -10.92050 -10.52314 -10.20614 -9.06110 -8.93301 -8.03101 -6.14076 0.74418 0.89355 1.37625 1.39479 1.51397 2.44263 3.07129 3.14513 3.25884 3.78596 4.07974 4.18675 4.20025 4.39833 4.46544 4.58478 4.61140 4.66656 4.67950 4.78126 4.86440 4.88262 4.94387 4.95212 5.07278 5.10715 5.12526 5.17549 5.32125 5.44385 5.58983 5.78409 5.85561 5.90414 6.08492 6.23096 6.35388 6.53396 6.66274 6.95754 7.50184 8.98291 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.011693 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.996020 B = 2393.956183 C = 3755.380342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.387 6.387 3 C 0.095 3.905 4 H 0.067 0.933 5 C -0.074 4.074 6 C -0.137 4.137 7 C -0.058 4.058 8 C -0.114 4.114 9 C -0.114 4.114 10 C -0.098 4.098 11 C -0.146 4.146 12 C -0.092 4.092 13 C -0.100 4.100 14 C 0.070 3.930 15 H 0.001 0.999 16 C -0.496 4.496 17 H 0.060 0.940 18 C 0.013 3.987 19 N -0.904 5.904 20 Si 0.949 3.051 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.285 1.285 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 6.761 7.356 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.306 6.306 3 C 0.037 3.963 4 H 0.084 0.916 5 C -0.111 4.111 6 C -0.137 4.137 7 C -0.058 4.058 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.154 4.154 11 C -0.164 4.164 12 C -0.092 4.092 13 C -0.157 4.157 14 C 0.051 3.949 15 H 0.019 0.981 16 C -0.534 4.534 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.543 5.543 20 Si 0.776 3.224 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.211 1.211 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.807 6.611 7.260 10.932 hybrid contribution 0.561 -1.000 -0.538 1.267 sum -4.246 5.611 6.721 9.731 Atomic orbital electron populations 1.22964 0.80929 1.03319 1.00383 1.88081 1.20103 1.27506 1.94863 1.22706 0.94584 0.83722 0.95264 0.91553 1.21225 0.94514 0.98037 0.97365 1.20505 0.98462 0.99125 0.95590 1.21079 0.95345 0.93048 0.96368 1.21101 0.95269 0.95631 1.01289 1.20190 0.98089 0.98016 0.95123 1.20662 0.93107 1.00043 1.01629 1.20883 0.95947 1.02709 0.96832 1.19657 0.95876 0.96738 0.96928 1.20702 1.00122 1.02390 0.92454 1.18504 0.89892 0.93535 0.92958 0.98104 1.21114 1.01340 0.95182 1.35794 0.92169 1.25661 0.97661 0.99940 0.95286 1.69993 1.13445 1.32568 1.38336 0.85636 0.78045 0.81099 0.77657 1.19610 1.20505 1.21123 0.92990 0.93876 0.88882 0.89458 0.91307 0.86379 0.91797 0.92411 0.89649 0.84084 0.91278 0.90096 0.91317 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.87 113.37 1.23 1.83 16 2 O -0.39 -16.41 8.67 -148.98 -1.29 -17.70 16 3 C 0.10 4.08 3.36 31.51 0.11 4.18 16 4 H 0.07 2.56 7.85 -2.39 -0.02 2.54 16 5 C -0.07 -2.87 6.01 30.52 0.18 -2.69 16 6 C -0.14 -5.85 6.00 -19.60 -0.12 -5.97 16 7 C -0.06 -2.90 5.19 -19.43 -0.10 -3.00 16 8 C -0.11 -5.63 8.64 22.30 0.19 -5.43 16 9 C -0.11 -4.59 5.88 -19.89 -0.12 -4.70 16 10 C -0.10 -3.10 10.01 71.24 0.71 -2.39 16 11 C -0.15 -5.19 9.35 22.24 0.21 -4.98 16 12 C -0.09 -3.35 5.88 -19.83 -0.12 -3.46 16 13 C -0.10 -2.63 9.87 71.24 0.70 -1.92 16 14 C 0.07 3.68 2.76 -11.45 -0.03 3.65 16 15 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 16 C -0.50 -28.58 8.18 25.60 0.21 -28.37 16 17 H 0.06 3.55 6.65 -2.91 -0.02 3.53 16 18 C 0.01 0.76 5.34 84.66 0.45 1.21 16 19 N -0.90 -52.53 10.03 21.45 0.22 -52.31 16 20 Si 0.95 45.88 29.54 68.60 2.03 47.91 16 21 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 1.17 8.11 -2.39 -0.02 1.15 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.09 2.71 7.62 -2.39 -0.02 2.69 16 28 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 29 H 0.12 6.38 6.12 -2.91 -0.02 6.36 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.84 8.09 -2.39 -0.02 1.82 16 32 H 0.08 2.13 8.09 -2.38 -0.02 2.11 16 33 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 36 H 0.07 1.66 7.29 -2.39 -0.02 1.64 16 37 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -66.14 299.97 5.51 -60.64 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.04 Total: 13.51 kcal Atomic # 6 Polarization: -55.56 SS G_CDS: 3.52 Total: -52.04 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.22 Total: -52.31 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.29 Total: -17.70 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -66.14 5.51 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.137 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds