Wall clock time and date at job start Mon Mar 30 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 C 1.50701 * 109.47118 * 179.97438 * 10 9 8 12 12 O 1.20761 * 119.99770 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.50697 * 109.47392 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99556 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99916 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00246 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99605 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47402 * 59.99803 * 18 16 14 20 20 H 1.48506 * 109.47130 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47465 * 299.99249 * 18 16 14 22 22 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 23 23 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 24 24 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 25 25 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 29 29 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 30 30 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 31 31 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 32 32 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 33 33 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 34 34 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 35 35 H 1.08999 * 109.47188 * 300.00984 * 13 11 10 36 36 H 1.09004 * 109.46940 * 60.00415 * 13 11 10 37 37 H 0.97004 * 120.00201 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 6 0.4305 -4.2514 1.4260 12 8 0.1325 -4.7724 0.3781 13 6 0.0494 -4.9067 2.7285 14 6 -0.6904 -6.1893 2.4480 15 1 -0.8674 -6.4987 1.4285 16 6 -1.1423 -6.9671 3.4929 17 7 -0.9273 -6.5900 4.7343 18 14 -2.0600 -8.5565 3.1451 19 1 -1.1871 -9.4722 2.3675 20 1 -2.4355 -9.2023 4.4286 21 1 -3.2868 -8.2589 2.3629 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5139 25 1 1.6581 2.1326 0.0004 26 1 4.1204 2.1326 0.0100 27 1 5.3516 0.0002 0.0096 28 1 4.5118 -2.8187 1.0287 29 1 3.7470 -3.2607 -0.5166 30 1 5.2885 -2.3708 -0.5089 31 1 0.4942 -2.3709 -0.5265 32 1 2.0358 -3.2608 -0.5225 33 1 2.1350 -3.0778 1.9484 34 1 0.5935 -2.1879 1.9444 35 1 0.9499 -5.1251 3.3025 36 1 -0.5913 -4.2347 3.2995 37 1 -1.2449 -7.1375 5.4694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:30 Heat of formation + Delta-G solvation = -43.505675 kcal Electronic energy + Delta-G solvation = -17149.041701 eV Core-core repulsion = 14469.182534 eV Total energy + Delta-G solvation = -2679.859167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.91042 -38.31218 -34.06147 -33.56924 -32.93366 -30.49138 -28.97782 -27.32873 -26.64200 -24.79588 -22.76471 -20.66017 -20.38535 -18.51119 -16.33675 -16.18728 -16.14604 -15.05954 -14.59071 -14.46106 -14.33245 -13.90118 -13.35328 -13.17949 -12.93247 -12.74359 -12.69861 -12.59510 -12.02978 -11.77705 -11.71184 -11.40978 -11.17981 -11.03152 -10.83797 -10.64877 -10.59080 -10.46209 -10.00776 -9.29401 -8.67387 -8.53008 -8.43117 -8.17982 -6.05138 -4.06101 1.38191 1.39588 3.07132 3.35873 3.38568 3.43597 3.73052 4.44469 4.73505 4.81007 4.91446 4.95456 5.22356 5.25372 5.32235 5.38381 5.45694 5.46540 5.62119 5.62414 5.69884 5.71018 5.84970 5.90939 5.98136 6.14132 6.15714 6.31498 6.47638 6.50522 6.58865 6.74816 6.79957 7.07336 7.25443 7.36720 7.93466 8.23631 8.72420 9.03211 9.58964 11.06773 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038979 B = 0.004372 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.154293 B = 6402.642022 C = 6630.200518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.079 4.079 7 C -0.121 4.121 8 C -0.076 4.076 9 C -0.077 4.077 10 C -0.169 4.169 11 C 0.355 3.645 12 O -0.467 6.467 13 C -0.028 4.028 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 14.878 -7.700 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.079 4.079 7 C -0.177 4.177 8 C -0.076 4.076 9 C -0.114 4.114 10 C -0.207 4.207 11 C 0.231 3.769 12 O -0.342 6.342 13 C -0.064 4.064 14 C -0.555 4.555 15 H 0.089 0.911 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.427 14.539 -8.071 18.642 hybrid contribution -0.357 -0.613 0.153 0.726 sum 8.071 13.926 -7.917 17.937 Atomic orbital electron populations 1.20883 0.91256 1.03161 1.02408 1.19794 0.96059 0.92525 0.99465 1.20964 0.94223 0.97286 1.02069 1.21031 0.94297 0.97733 1.01046 1.20959 0.99457 0.92045 1.02062 1.19791 0.93213 0.95393 0.99487 1.20901 0.99553 0.94575 1.02715 1.19742 0.93014 0.94931 0.99903 1.20504 1.00381 0.93253 0.97272 1.22204 1.02414 0.98918 0.97116 1.25212 0.74401 0.84535 0.92731 1.90228 1.45406 1.63046 1.35473 1.19598 0.98717 0.97015 0.91114 1.21159 1.35408 1.05185 0.93767 0.91070 1.25004 0.96198 0.98291 0.94964 1.69951 1.46888 1.38798 0.98271 0.86542 0.80295 0.83227 0.77292 1.20146 1.21321 1.20141 0.91212 0.90710 0.91672 0.86424 0.86477 0.86427 0.90877 0.90774 0.91863 0.90479 0.90261 0.89187 0.89201 0.93087 0.93097 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.19 36.00 0.33 -1.03 16 2 C -0.08 -0.99 5.88 -104.63 -0.62 -1.61 16 3 C -0.13 -1.44 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 5 C -0.13 -1.44 9.70 -39.58 -0.38 -1.82 16 6 C -0.08 -0.99 5.88 -104.62 -0.62 -1.61 16 7 C -0.12 -1.36 9.61 36.01 0.35 -1.01 16 8 C -0.08 -1.03 5.13 -104.62 -0.54 -1.57 16 9 C -0.08 -1.15 3.53 -27.88 -0.10 -1.25 16 10 C -0.17 -2.74 5.48 -27.89 -0.15 -2.89 16 11 C 0.35 7.61 7.15 -29.03 -0.21 7.40 16 12 O -0.47 -11.24 15.08 6.00 0.09 -11.15 16 13 C -0.03 -0.70 5.40 -29.04 -0.16 -0.86 16 14 C -0.52 -14.90 8.92 -34.44 -0.31 -15.20 16 15 H 0.07 2.11 6.76 -52.49 -0.35 1.75 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.92 5.84 -51.93 -0.30 0.62 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 26 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.88 5.95 -51.93 -0.31 0.57 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.08 1.19 6.67 -51.93 -0.35 0.84 16 32 H 0.08 1.22 5.91 -51.93 -0.31 0.91 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.36 7.38 -51.93 -0.38 0.97 16 35 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -31.34 308.17 -8.19 -39.53 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.36 Total: -0.81 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.28 Total: -23.48 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.34 -8.19 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.978 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds