Wall clock time and date at job start Mon Mar 30 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 C 1.50701 * 109.47118 * 179.97438 * 10 9 8 12 12 O 1.20761 * 119.99770 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.50697 * 109.47392 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99556 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99916 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00246 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99605 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47402 * 59.99803 * 18 16 14 20 20 H 1.48506 * 109.47130 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47465 * 299.99249 * 18 16 14 22 22 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 23 23 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 24 24 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 25 25 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 29 29 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 30 30 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 31 31 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 32 32 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 33 33 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 34 34 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 35 35 H 1.08999 * 109.47188 * 300.00984 * 13 11 10 36 36 H 1.09004 * 109.46940 * 60.00415 * 13 11 10 37 37 H 0.97004 * 120.00201 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 6 0.4305 -4.2514 1.4260 12 8 0.1325 -4.7724 0.3781 13 6 0.0494 -4.9067 2.7285 14 6 -0.6904 -6.1893 2.4480 15 1 -0.8674 -6.4987 1.4285 16 6 -1.1423 -6.9671 3.4929 17 7 -0.9273 -6.5900 4.7343 18 14 -2.0600 -8.5565 3.1451 19 1 -1.1871 -9.4722 2.3675 20 1 -2.4355 -9.2023 4.4286 21 1 -3.2868 -8.2589 2.3629 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5139 25 1 1.6581 2.1326 0.0004 26 1 4.1204 2.1326 0.0100 27 1 5.3516 0.0002 0.0096 28 1 4.5118 -2.8187 1.0287 29 1 3.7470 -3.2607 -0.5166 30 1 5.2885 -2.3708 -0.5089 31 1 0.4942 -2.3709 -0.5265 32 1 2.0358 -3.2608 -0.5225 33 1 2.1350 -3.0778 1.9484 34 1 0.5935 -2.1879 1.9444 35 1 0.9499 -5.1251 3.3025 36 1 -0.5913 -4.2347 3.2995 37 1 -1.2449 -7.1375 5.4694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:29 Heat of formation + Delta-G solvation = -59.287881 kcal Electronic energy + Delta-G solvation = -17149.726069 eV Core-core repulsion = 14469.182534 eV Total energy + Delta-G solvation = -2680.543535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94834 -39.96134 -35.22182 -35.07259 -34.44320 -31.88449 -30.71953 -28.39847 -27.48684 -26.41191 -24.41690 -21.53757 -21.39307 -20.23053 -18.51092 -17.27199 -17.22959 -16.70163 -16.19487 -15.96037 -15.49667 -15.23446 -14.75446 -14.17376 -14.06928 -14.02367 -13.75811 -13.70540 -13.50447 -13.16233 -13.02963 -12.77303 -12.67627 -12.54390 -12.36636 -12.06711 -12.05440 -11.63777 -11.54727 -11.46767 -10.63267 -10.20156 -9.39960 -9.38715 -8.25207 -6.34093 0.48646 0.50760 1.30808 1.38625 1.41095 1.49739 2.39204 2.83504 3.09164 3.40178 3.90627 3.94391 4.12904 4.14918 4.16551 4.21246 4.47355 4.50509 4.61317 4.67896 4.77978 4.83060 4.88168 4.95675 4.97021 5.02861 5.05236 5.15162 5.20015 5.30766 5.39813 5.42330 5.64563 5.69754 5.70798 5.85557 6.11714 6.20411 6.77758 6.94395 7.35121 8.86220 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038979 B = 0.004372 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.154293 B = 6402.642022 C = 6630.200518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.121 4.121 5 C -0.133 4.133 6 C -0.091 4.091 7 C -0.121 4.121 8 C -0.097 4.097 9 C -0.067 4.067 10 C -0.151 4.151 11 C 0.362 3.638 12 O -0.496 6.496 13 C -0.032 4.032 14 C -0.545 4.545 15 H 0.056 0.944 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.961 3.039 19 H -0.272 1.272 20 H -0.275 1.275 21 H -0.272 1.272 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.139 0.861 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.371 16.150 -7.950 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.091 4.091 7 C -0.177 4.177 8 C -0.097 4.097 9 C -0.104 4.104 10 C -0.189 4.189 11 C 0.241 3.759 12 O -0.372 6.372 13 C -0.069 4.069 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.197 1.197 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.157 0.843 26 H 0.163 0.837 27 H 0.157 0.843 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.182 15.823 -8.316 20.096 hybrid contribution -0.557 -0.952 0.242 1.129 sum 8.625 14.872 -8.074 18.993 Atomic orbital electron populations 1.20890 0.90807 1.03202 1.02762 1.20001 0.96643 0.92809 0.99626 1.21265 0.94790 0.97589 1.01462 1.21419 0.94310 0.98741 0.99438 1.21263 1.00679 0.91698 1.01454 1.20000 0.93009 0.96461 0.99622 1.20913 1.00148 0.93844 1.02839 1.19658 0.93547 0.94312 1.02162 1.20340 1.00100 0.94209 0.95784 1.22035 1.02264 0.95751 0.98811 1.25256 0.74054 0.86016 0.90617 1.90214 1.46788 1.64357 1.35891 1.19565 0.97942 0.96192 0.93191 1.21439 1.36554 1.07064 0.93268 0.92624 1.25809 0.96843 1.01549 0.94732 1.70033 1.47446 1.40059 0.98977 0.85558 0.79029 0.79175 0.77642 1.19673 1.19991 1.19670 0.90737 0.92250 0.89994 0.84301 0.83749 0.84300 0.90793 0.92014 0.90010 0.91438 0.91100 0.87616 0.87657 0.93848 0.93869 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.19 71.24 0.65 -1.93 16 2 C -0.09 -2.16 5.88 -19.87 -0.12 -2.27 16 3 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 4 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 5 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 6 C -0.09 -2.15 5.88 -19.86 -0.12 -2.27 16 7 C -0.12 -2.59 9.61 71.24 0.68 -1.90 16 8 C -0.10 -2.54 5.13 -19.87 -0.10 -2.64 16 9 C -0.07 -2.01 3.53 29.85 0.11 -1.90 16 10 C -0.15 -4.87 5.48 29.85 0.16 -4.71 16 11 C 0.36 15.84 7.15 29.10 0.21 16.05 16 12 O -0.50 -24.50 15.08 -1.45 -0.02 -24.52 16 13 C -0.03 -1.65 5.40 29.10 0.16 -1.49 16 14 C -0.55 -32.11 8.92 25.60 0.23 -31.88 16 15 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 18 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 22 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.44 5.84 -2.39 -0.01 1.43 16 24 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.46 5.95 -2.39 -0.01 1.44 16 30 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 31 H 0.07 2.11 6.67 -2.39 -0.02 2.10 16 32 H 0.07 2.21 5.91 -2.39 -0.01 2.20 16 33 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.11 3.11 7.38 -2.38 -0.02 3.09 16 35 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.04 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -67.13 308.17 6.32 -60.81 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.05 Total: 11.76 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 2.98 Total: -40.85 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.02 Total: -24.52 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.13 6.32 -60.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.520 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds