Wall clock time and date at job start Mon Mar 30 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 116.99706 * 2 1 4 4 C 1.38732 * 120.05724 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94713 * 180.25582 * 4 3 2 6 6 C 1.50699 * 119.97278 * 179.72189 * 5 4 3 7 7 C 1.38264 * 120.05409 * 359.46607 * 5 4 3 8 8 C 1.50703 * 119.94689 * 180.27664 * 7 5 4 9 9 C 1.50702 * 115.54917 * 167.72549 * 8 7 5 10 10 H 1.08004 * 119.99735 * 82.75210 * 9 8 7 11 11 C 1.37872 * 119.99975 * 262.74954 * 9 8 7 12 12 N 1.31509 * 120.00077 * 193.51249 * 11 9 8 13 13 Si 1.86802 * 120.00054 * 13.51353 * 11 9 8 14 14 H 1.48505 * 109.47298 * 94.25182 * 13 11 9 15 15 H 1.48504 * 109.46985 * 214.25008 * 13 11 9 16 16 H 1.48499 * 109.47156 * 334.24829 * 13 11 9 17 17 C 1.52996 * 117.49373 * 22.05736 * 8 7 5 18 18 C 1.52997 * 117.49670 * 313.40020 * 8 7 5 19 19 C 1.38272 * 120.11267 * 0.51405 * 7 5 4 20 20 C 1.50699 * 119.97566 * 179.74095 * 19 7 5 21 21 C 1.38146 * 120.05245 * 359.76410 * 19 7 5 22 22 H 1.08992 * 109.47213 * 299.99890 * 1 2 3 23 23 H 1.09002 * 109.46854 * 60.00192 * 1 2 3 24 24 H 1.08994 * 109.46689 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.02562 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.46804 * 97.12946 * 6 5 4 27 27 H 1.08995 * 109.47130 * 217.12675 * 6 5 4 28 28 H 1.08997 * 109.47184 * 337.12864 * 6 5 4 29 29 H 0.97000 * 120.00410 * 179.97438 * 12 11 9 30 30 H 1.09004 * 117.50286 * 0.02562 * 17 8 7 31 31 H 1.09002 * 117.49644 * 145.01772 * 17 8 7 32 32 H 1.09008 * 117.49629 * 214.97640 * 18 8 7 33 33 H 1.08997 * 117.49978 * 359.97046 * 18 8 7 34 34 H 1.08996 * 109.46982 * 294.35265 * 20 19 7 35 35 H 1.09000 * 109.46810 * 54.34498 * 20 19 7 36 36 H 1.08996 * 109.47381 * 174.34128 * 20 19 7 37 37 H 1.08003 * 120.02696 * 179.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0059 6 6 5.5608 2.5981 0.0128 7 6 3.3019 3.6759 -0.0005 8 6 3.9859 5.0187 -0.0009 9 6 3.0984 6.2001 -0.2970 10 1 2.5081 6.6430 0.4916 11 6 3.0402 6.7156 -1.5744 12 7 2.4871 7.8900 -1.7850 13 14 3.7470 5.7459 -3.0060 14 1 2.6692 4.9475 -3.6433 15 1 4.3234 6.6839 -4.0026 16 1 4.8104 4.8356 -2.5103 17 6 5.4296 5.0758 -0.5043 18 6 5.1331 5.2274 0.9897 19 6 1.9210 3.6048 -0.0014 20 6 1.1020 4.8699 -0.0024 21 6 1.2915 2.3751 -0.0010 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 4.0209 0.3801 0.0014 26 1 5.9213 2.7472 -1.0050 27 1 5.8767 3.4346 0.6362 28 1 5.9728 1.6714 0.4122 29 1 2.4464 8.2529 -2.6836 30 1 5.8844 4.1422 -0.8356 31 1 5.7376 5.9681 -1.0494 32 1 5.2461 6.2195 1.4270 33 1 5.3927 4.3937 1.6420 34 1 1.2596 5.4054 0.9337 35 1 1.4080 5.5001 -0.8375 36 1 0.0462 4.6191 -0.1044 37 1 0.2128 2.3201 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:23 Heat of formation + Delta-G solvation = 59.045618 kcal Electronic energy + Delta-G solvation = -18544.294832 eV Core-core repulsion = 15868.882622 eV Total energy + Delta-G solvation = -2675.412210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11453 -38.48950 -35.65761 -33.69276 -31.81055 -29.85999 -27.87915 -27.15915 -26.14392 -24.75261 -21.75650 -21.47870 -20.12941 -19.26331 -17.12138 -16.65348 -15.79948 -15.44773 -15.23095 -14.48298 -13.68351 -13.50151 -13.26914 -13.00148 -12.95511 -12.56839 -12.24768 -11.94368 -11.68590 -11.64190 -11.21346 -11.06196 -10.73731 -10.62378 -10.35885 -10.22223 -10.05545 -9.75865 -9.32182 -8.94034 -8.61256 -8.42825 -7.93578 -7.09472 -6.16397 -4.03920 1.94097 2.09955 3.30821 3.40955 3.49097 3.60368 4.27754 4.43453 5.07145 5.17439 5.18954 5.29486 5.35740 5.48358 5.52904 5.61962 5.71182 5.84325 5.97276 5.98530 6.13533 6.26357 6.29165 6.31428 6.47543 6.58528 6.69571 6.74031 6.85312 6.93650 7.00065 7.15646 7.18651 7.41011 7.51645 7.71667 7.79315 7.97536 8.45708 8.83255 9.44474 10.92407 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.009564 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.388569 B = 2927.044187 C = 3423.109808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.108 3.892 4 C -0.168 4.168 5 C -0.058 4.058 6 C -0.142 4.142 7 C -0.066 4.066 8 C 0.034 3.966 9 C -0.475 4.475 10 H 0.085 0.915 11 C 0.076 3.924 12 N -0.890 5.890 13 Si 0.847 3.153 14 H -0.282 1.282 15 H -0.291 1.291 16 H -0.232 1.232 17 C -0.212 4.212 18 C -0.189 4.189 19 C -0.010 4.010 20 C -0.116 4.116 21 C -0.223 4.223 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.265 0.735 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.019 0.981 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -11.394 2.795 11.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.240 6.240 3 C 0.064 3.936 4 C -0.187 4.187 5 C -0.058 4.058 6 C -0.197 4.197 7 C -0.067 4.067 8 C 0.033 3.967 9 C -0.513 4.513 10 H 0.103 0.897 11 C -0.127 4.127 12 N -0.527 5.527 13 Si 0.673 3.327 14 H -0.208 1.208 15 H -0.218 1.218 16 H -0.155 1.155 17 C -0.248 4.248 18 C -0.226 4.226 19 C -0.011 4.011 20 C -0.172 4.172 21 C -0.241 4.241 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.136 0.864 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.038 0.962 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.272 -11.431 2.655 11.739 hybrid contribution -0.150 -0.383 -0.951 1.036 sum 0.122 -11.814 1.704 11.937 Atomic orbital electron populations 1.22929 0.79276 1.02952 1.01296 1.85982 1.20706 1.27706 1.89606 1.18850 0.92159 0.83603 0.99026 1.20029 0.91023 0.97453 1.10208 1.19523 0.95643 0.91862 0.98780 1.21792 0.92000 1.03314 1.02639 1.19590 0.92780 0.93950 1.00384 1.18140 0.87275 0.91192 1.00095 1.20232 1.25212 1.09825 0.96002 0.89697 1.24870 0.95034 0.94199 0.98569 1.69942 1.45039 1.15733 1.21987 0.87362 0.81346 0.81482 0.82497 1.20836 1.21761 1.15511 1.24083 1.01614 1.03152 0.95956 1.23155 1.06514 1.00938 0.92005 1.19711 0.93611 0.94440 0.93300 1.21637 0.94065 0.95007 1.06452 1.21106 0.99208 0.92068 1.11756 0.92964 0.92957 0.88976 0.86422 0.90756 0.87730 0.93046 0.92517 0.87154 0.90144 0.89436 0.90119 0.91223 0.85320 0.96203 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.31 10.50 -19.42 -0.20 -5.51 16 3 C 0.11 1.98 6.69 -39.22 -0.26 1.72 16 4 C -0.17 -3.08 9.61 -39.43 -0.38 -3.46 16 5 C -0.06 -1.11 5.81 -104.65 -0.61 -1.72 16 6 C -0.14 -2.30 7.82 36.01 0.28 -2.01 16 7 C -0.07 -1.43 5.47 -104.60 -0.57 -2.00 16 8 C 0.03 0.76 1.39 -156.81 -0.22 0.54 16 9 C -0.48 -12.24 5.57 -34.44 -0.19 -12.43 16 10 H 0.09 2.36 6.58 -52.48 -0.35 2.01 16 11 C 0.08 2.04 4.14 -17.82 -0.07 1.97 16 12 N -0.89 -25.54 13.96 55.43 0.77 -24.76 16 13 Si 0.85 20.61 26.39 -169.99 -4.49 16.12 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.23 -5.26 4.69 56.52 0.26 -5.00 16 17 C -0.21 -4.36 5.76 -26.70 -0.15 -4.51 16 18 C -0.19 -3.75 9.07 -26.70 -0.24 -3.99 16 19 C -0.01 -0.22 5.87 -104.64 -0.61 -0.84 16 20 C -0.12 -2.53 8.04 36.01 0.29 -2.24 16 21 C -0.22 -4.22 8.66 -39.43 -0.34 -4.56 16 22 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 23 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.12 1.90 8.05 -52.48 -0.42 1.48 16 26 H 0.07 1.18 6.51 -51.93 -0.34 0.85 16 27 H 0.10 1.69 3.05 -51.93 -0.16 1.53 16 28 H 0.05 0.70 8.03 -51.93 -0.42 0.28 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.11 2.05 3.34 -52.90 -0.18 1.87 16 31 H 0.08 1.75 6.92 -51.93 -0.36 1.39 16 32 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.08 1.43 6.22 -51.93 -0.32 1.10 16 34 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 35 H 0.13 3.21 4.44 -51.93 -0.23 2.98 16 36 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 37 H 0.12 1.96 6.20 -52.48 -0.33 1.63 16 LS Contribution 277.33 15.07 4.18 4.18 Total: -1.00 -28.67 277.33 -6.60 -35.27 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.77 Total: 6.89 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -2.09 Total: -32.18 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.77 Total: -24.76 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.51 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.49 Total: 16.12 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.67 -6.60 -35.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.311 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds