Wall clock time and date at job start Mon Mar 30 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 116.99706 * 2 1 4 4 C 1.38732 * 120.05724 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94713 * 180.25582 * 4 3 2 6 6 C 1.50699 * 119.97278 * 179.72189 * 5 4 3 7 7 C 1.38264 * 120.05409 * 359.46607 * 5 4 3 8 8 C 1.50703 * 119.94689 * 180.27664 * 7 5 4 9 9 C 1.50702 * 115.54917 * 167.72549 * 8 7 5 10 10 H 1.08004 * 119.99735 * 82.75210 * 9 8 7 11 11 C 1.37872 * 119.99975 * 262.74954 * 9 8 7 12 12 N 1.31509 * 120.00077 * 193.51249 * 11 9 8 13 13 Si 1.86802 * 120.00054 * 13.51353 * 11 9 8 14 14 H 1.48505 * 109.47298 * 94.25182 * 13 11 9 15 15 H 1.48504 * 109.46985 * 214.25008 * 13 11 9 16 16 H 1.48499 * 109.47156 * 334.24829 * 13 11 9 17 17 C 1.52996 * 117.49373 * 22.05736 * 8 7 5 18 18 C 1.52997 * 117.49670 * 313.40020 * 8 7 5 19 19 C 1.38272 * 120.11267 * 0.51405 * 7 5 4 20 20 C 1.50699 * 119.97566 * 179.74095 * 19 7 5 21 21 C 1.38146 * 120.05245 * 359.76410 * 19 7 5 22 22 H 1.08992 * 109.47213 * 299.99890 * 1 2 3 23 23 H 1.09002 * 109.46854 * 60.00192 * 1 2 3 24 24 H 1.08994 * 109.46689 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.02562 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.46804 * 97.12946 * 6 5 4 27 27 H 1.08995 * 109.47130 * 217.12675 * 6 5 4 28 28 H 1.08997 * 109.47184 * 337.12864 * 6 5 4 29 29 H 0.97000 * 120.00410 * 179.97438 * 12 11 9 30 30 H 1.09004 * 117.50286 * 0.02562 * 17 8 7 31 31 H 1.09002 * 117.49644 * 145.01772 * 17 8 7 32 32 H 1.09008 * 117.49629 * 214.97640 * 18 8 7 33 33 H 1.08997 * 117.49978 * 359.97046 * 18 8 7 34 34 H 1.08996 * 109.46982 * 294.35265 * 20 19 7 35 35 H 1.09000 * 109.46810 * 54.34498 * 20 19 7 36 36 H 1.08996 * 109.47381 * 174.34128 * 20 19 7 37 37 H 1.08003 * 120.02696 * 179.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0059 6 6 5.5608 2.5981 0.0128 7 6 3.3019 3.6759 -0.0005 8 6 3.9859 5.0187 -0.0009 9 6 3.0984 6.2001 -0.2970 10 1 2.5081 6.6430 0.4916 11 6 3.0402 6.7156 -1.5744 12 7 2.4871 7.8900 -1.7850 13 14 3.7470 5.7459 -3.0060 14 1 2.6692 4.9475 -3.6433 15 1 4.3234 6.6839 -4.0026 16 1 4.8104 4.8356 -2.5103 17 6 5.4296 5.0758 -0.5043 18 6 5.1331 5.2274 0.9897 19 6 1.9210 3.6048 -0.0014 20 6 1.1020 4.8699 -0.0024 21 6 1.2915 2.3751 -0.0010 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 4.0209 0.3801 0.0014 26 1 5.9213 2.7472 -1.0050 27 1 5.8767 3.4346 0.6362 28 1 5.9728 1.6714 0.4122 29 1 2.4464 8.2529 -2.6836 30 1 5.8844 4.1422 -0.8356 31 1 5.7376 5.9681 -1.0494 32 1 5.2461 6.2195 1.4270 33 1 5.3927 4.3937 1.6420 34 1 1.2596 5.4054 0.9337 35 1 1.4080 5.5001 -0.8375 36 1 0.0462 4.6191 -0.1044 37 1 0.2128 2.3201 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:22 Heat of formation + Delta-G solvation = 42.842652 kcal Electronic energy + Delta-G solvation = -18544.997445 eV Core-core repulsion = 15868.882622 eV Total energy + Delta-G solvation = -2676.114823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57476 -39.86280 -37.15379 -35.38944 -33.64993 -31.25025 -29.32370 -28.57825 -27.62799 -26.41095 -23.37437 -22.99083 -21.57858 -20.93758 -18.74197 -18.19614 -17.28277 -16.74497 -16.59686 -16.31375 -15.16572 -15.00895 -14.74043 -14.62999 -14.43622 -14.14440 -13.83804 -13.54400 -13.07734 -13.02821 -12.85028 -12.61329 -12.46253 -12.28581 -11.85852 -11.77264 -11.59451 -11.47946 -10.94658 -10.61946 -10.47414 -10.29900 -9.41570 -8.60264 -8.23967 -6.11490 0.48730 0.60988 1.34480 1.42223 1.52764 2.41929 2.44112 2.79003 3.07145 3.52373 3.95973 3.99412 4.08111 4.33395 4.38081 4.39515 4.45263 4.49320 4.55520 4.66774 4.70445 4.73984 4.79740 4.89529 5.03082 5.07066 5.10202 5.16951 5.27636 5.34651 5.48878 5.55522 5.61401 5.79725 5.89329 6.00220 6.11771 6.41235 6.56961 6.77923 7.38004 8.88223 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.009564 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.388569 B = 2927.044187 C = 3423.109808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.110 3.890 4 C -0.169 4.169 5 C -0.059 4.059 6 C -0.144 4.144 7 C -0.090 4.090 8 C 0.007 3.993 9 C -0.456 4.456 10 H 0.048 0.952 11 C 0.031 3.969 12 N -0.940 5.940 13 Si 0.891 3.109 14 H -0.294 1.294 15 H -0.297 1.297 16 H -0.201 1.201 17 C -0.208 4.208 18 C -0.173 4.173 19 C -0.038 4.038 20 C -0.106 4.106 21 C -0.225 4.225 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.125 0.875 25 H 0.144 0.856 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.262 0.738 30 H 0.141 0.859 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -14.855 3.078 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.065 3.935 4 C -0.187 4.187 5 C -0.059 4.059 6 C -0.198 4.198 7 C -0.091 4.091 8 C 0.006 3.994 9 C -0.494 4.494 10 H 0.066 0.934 11 C -0.166 4.166 12 N -0.580 5.580 13 Si 0.717 3.283 14 H -0.221 1.221 15 H -0.224 1.224 16 H -0.122 1.122 17 C -0.244 4.244 18 C -0.210 4.210 19 C -0.039 4.039 20 C -0.162 4.162 21 C -0.244 4.244 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.143 0.857 25 H 0.162 0.838 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.538 -14.916 2.958 15.283 hybrid contribution -0.666 0.603 -0.920 1.286 sum 0.872 -14.313 2.038 14.483 Atomic orbital electron populations 1.23273 0.77036 1.05374 1.01733 1.85987 1.22986 1.26443 1.89142 1.19001 0.92603 0.84063 0.97820 1.20373 0.91330 0.98074 1.08967 1.19793 0.97222 0.91163 0.97752 1.21801 0.89789 1.05061 1.03186 1.19545 0.93031 0.94073 1.02426 1.18082 0.87700 0.90722 1.02895 1.20294 1.24124 1.10283 0.94687 0.93405 1.25428 0.95844 0.94723 1.00651 1.70055 1.48021 1.17747 1.22149 0.86663 0.81175 0.80640 0.79818 1.22144 1.22426 1.12235 1.24234 0.99829 1.03895 0.96393 1.23179 1.04095 1.01589 0.92111 1.19749 0.93974 0.94698 0.95436 1.21334 0.95538 0.95233 1.04099 1.21233 1.00312 0.91501 1.11327 0.92304 0.92719 0.85689 0.83817 0.90057 0.87811 0.89886 0.92874 0.84230 0.91664 0.90497 0.87133 0.92863 0.88815 0.94316 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.53 16 2 O -0.33 -9.60 10.50 -92.42 -0.97 -10.57 16 3 C 0.11 3.70 6.69 22.51 0.15 3.85 16 4 C -0.17 -5.51 9.61 22.37 0.21 -5.30 16 5 C -0.06 -2.06 5.81 -19.88 -0.12 -2.18 16 6 C -0.14 -3.93 7.82 71.24 0.56 -3.38 16 7 C -0.09 -3.75 5.47 -19.85 -0.11 -3.86 16 8 C 0.01 0.30 1.39 -53.67 -0.07 0.23 16 9 C -0.46 -24.33 5.57 25.60 0.14 -24.18 16 10 H 0.05 2.83 6.58 -2.91 -0.02 2.81 16 11 C 0.03 1.73 4.14 84.65 0.35 2.08 16 12 N -0.94 -56.61 13.96 21.44 0.30 -56.31 16 13 Si 0.89 42.97 26.39 68.60 1.81 44.78 16 14 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 15 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 16 H -0.20 -8.55 4.69 99.48 0.47 -8.08 16 17 C -0.21 -8.08 5.76 30.62 0.18 -7.90 16 18 C -0.17 -6.57 9.07 30.62 0.28 -6.29 16 19 C -0.04 -1.62 5.87 -19.88 -0.12 -1.73 16 20 C -0.11 -4.78 8.04 71.24 0.57 -4.21 16 21 C -0.23 -8.11 8.66 22.37 0.19 -7.92 16 22 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 23 H 0.05 1.11 7.66 -2.39 -0.02 1.09 16 24 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 25 H 0.14 3.89 8.05 -2.91 -0.02 3.87 16 26 H 0.08 2.16 6.51 -2.39 -0.02 2.15 16 27 H 0.10 2.87 3.05 -2.39 -0.01 2.86 16 28 H 0.08 1.78 8.03 -2.39 -0.02 1.76 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.14 4.62 3.34 -3.30 -0.01 4.61 16 31 H 0.06 2.73 6.92 -2.39 -0.02 2.72 16 32 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 33 H 0.11 3.54 6.22 -2.39 -0.01 3.52 16 34 H 0.05 2.48 6.76 -2.39 -0.02 2.47 16 35 H 0.09 4.90 4.44 -2.39 -0.01 4.89 16 36 H 0.04 1.51 7.89 -2.39 -0.02 1.50 16 37 H 0.14 4.23 6.20 -2.91 -0.02 4.22 16 Total: -1.00 -63.82 277.33 5.32 -58.51 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.84 Total: 22.87 kcal Atomic # 6 Polarization: -62.60 SS G_CDS: 3.33 Total: -59.27 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.97 Total: -10.57 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.81 Total: 44.78 kcal Total: -63.82 5.32 -58.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.349 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds