Wall clock time and date at job start Mon Mar 30 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38396 * 119.91338 * 2 1 4 4 C 1.38406 * 120.34881 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.91659 * 179.97438 * 4 3 2 6 6 C 1.37888 * 120.17026 * 359.97233 * 4 3 2 7 7 C 1.39855 * 119.82486 * 0.02562 * 6 4 3 8 8 C 1.47168 * 120.17344 * 179.72453 * 7 6 4 9 9 O 1.21255 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99955 * 179.97438 * 8 7 6 11 11 C 1.52998 * 109.46720 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46934 * 180.02562 * 11 10 8 13 13 C 1.50709 * 109.47342 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99698 * 0.02562 * 13 12 11 15 15 C 1.37867 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00344 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47000 * 89.99807 * 17 15 13 19 19 H 1.48502 * 109.46817 * 210.00049 * 17 15 13 20 20 H 1.48500 * 109.46741 * 329.99439 * 17 15 13 21 21 C 1.37882 * 119.90784 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47215 * 89.99865 * 1 2 3 23 23 H 1.09000 * 109.47687 * 210.00659 * 1 2 3 24 24 H 1.09006 * 109.46864 * 330.00785 * 1 2 3 25 25 H 1.08002 * 119.83274 * 359.96922 * 3 2 1 26 26 H 1.09001 * 109.46996 * 269.97593 * 5 4 3 27 27 H 1.08994 * 109.46888 * 29.97528 * 5 4 3 28 28 H 1.09005 * 109.47137 * 149.97797 * 5 4 3 29 29 H 1.07999 * 120.08813 * 179.97438 * 6 4 3 30 30 H 1.08992 * 109.47353 * 299.99848 * 10 8 7 31 31 H 1.09001 * 109.47108 * 60.00409 * 10 8 7 32 32 H 1.08997 * 109.47652 * 300.00246 * 11 10 8 33 33 H 1.09006 * 109.47309 * 60.00262 * 11 10 8 34 34 H 1.09000 * 109.47010 * 299.99736 * 12 11 10 35 35 H 1.09001 * 109.47088 * 60.00447 * 12 11 10 36 36 H 0.96998 * 120.00266 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.09422 * 0.04730 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1996 0.0000 4 6 3.5812 1.2101 -0.0005 5 6 4.3229 2.5220 -0.0011 6 6 4.2833 0.0233 -0.0005 7 6 3.5931 -1.1931 -0.0005 8 6 4.3347 -2.4643 -0.0065 9 8 5.5472 -2.4588 -0.0111 10 6 3.5870 -3.7727 -0.0059 11 6 4.5865 -4.9311 -0.0135 12 6 3.8275 -6.2596 -0.0135 13 6 4.8120 -7.4007 -0.0204 14 1 5.8729 -7.1985 -0.0240 15 6 4.3582 -8.7025 -0.0222 16 7 3.0663 -8.9487 -0.0183 17 14 5.5785 -10.1170 -0.0300 18 1 5.9067 -10.4953 1.3679 19 1 4.9813 -11.2820 -0.7310 20 1 6.8174 -9.6979 -0.7334 21 6 2.1946 -1.1952 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6531 2.1325 -0.0005 26 1 4.5017 2.8378 -1.0289 27 1 3.7270 3.2764 0.5124 28 1 5.2765 2.4005 0.5127 29 1 5.3632 0.0331 -0.0013 30 1 2.9647 -3.8352 0.8868 31 1 2.9566 -3.8314 -0.8932 32 1 5.2085 -4.8685 -0.9064 33 1 5.2173 -4.8726 0.8735 34 1 3.2053 -6.3225 0.8792 35 1 3.1971 -6.3178 -0.9008 36 1 2.7471 -9.8647 -0.0192 37 1 1.6546 -2.1306 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:34 Heat of formation + Delta-G solvation = -48.129166 kcal Electronic energy + Delta-G solvation = -16634.206348 eV Core-core repulsion = 13954.146691 eV Total energy + Delta-G solvation = -2680.059657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10625 -38.43008 -34.28098 -33.73244 -32.50125 -31.83850 -28.29066 -27.48643 -26.67220 -24.69541 -22.82278 -20.85761 -20.10347 -19.00352 -16.71638 -16.33097 -15.74574 -15.56394 -15.18517 -14.45616 -14.19236 -14.10363 -13.72096 -13.43254 -13.16965 -13.14028 -12.75433 -12.27092 -12.11683 -11.79947 -11.67387 -11.63320 -11.31894 -11.19422 -10.79739 -10.55848 -10.53874 -9.68292 -9.67065 -9.20511 -8.93783 -8.91766 -8.74525 -8.31072 -5.96617 -3.98147 0.67821 1.21072 2.54483 3.35421 3.41129 3.45877 3.69248 4.17832 4.50609 4.54338 4.59004 4.92962 5.07497 5.12282 5.18003 5.32113 5.36600 5.39355 5.42758 5.51647 5.61964 5.65144 5.73939 5.77686 5.89234 5.99513 6.23494 6.26813 6.38509 6.46771 6.72002 6.79326 6.92306 7.15077 7.71534 7.81232 7.84919 8.03968 8.47913 9.08900 9.65809 11.14848 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.003810 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.623671 B = 7347.425871 C = 8020.690633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.097 4.097 4 C -0.100 4.100 5 C -0.113 4.113 6 C -0.073 4.073 7 C -0.155 4.155 8 C 0.392 3.608 9 O -0.451 6.451 10 C -0.164 4.164 11 C -0.102 4.102 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.078 4.078 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 22.207 0.016 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.100 4.100 5 C -0.169 4.169 6 C -0.091 4.091 7 C -0.155 4.155 8 C 0.270 3.730 9 O -0.326 6.326 10 C -0.201 4.201 11 C -0.139 4.139 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.096 4.096 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.403 22.061 0.010 22.496 hybrid contribution 0.451 -0.846 -0.004 0.959 sum -3.951 21.216 0.006 21.580 Atomic orbital electron populations 1.20802 0.90717 1.03012 1.02545 1.19885 0.96374 0.92892 1.00585 1.21110 0.93479 0.97635 0.99282 1.19866 0.93821 0.95348 1.00916 1.20783 1.00076 0.93664 1.02425 1.21317 1.00469 0.90901 0.96395 1.20752 0.94516 0.95263 1.05017 1.22864 0.89048 0.90285 0.70850 1.90487 1.16368 1.89948 1.35810 1.22160 1.00857 0.93195 1.03923 1.21500 0.96902 0.94101 1.01434 1.19127 0.95443 0.89935 0.97157 1.21282 0.93238 0.91004 1.50155 0.92620 1.25020 0.95135 0.98962 0.95391 1.69962 1.12671 1.19887 1.51208 0.86595 0.81431 0.81911 0.78102 1.20673 1.21254 1.19843 1.21431 0.92961 0.98375 0.96837 0.91017 0.91098 0.91580 0.85912 0.91117 0.91523 0.91364 0.85094 0.88781 0.88794 0.92838 0.92835 0.96577 0.96558 0.93069 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.10 -1.00 5.87 -104.69 -0.61 -1.61 16 3 C -0.10 -0.94 9.34 -39.46 -0.37 -1.31 16 4 C -0.10 -1.05 5.87 -104.69 -0.61 -1.67 16 5 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 6 C -0.07 -0.94 9.25 -39.10 -0.36 -1.30 16 7 C -0.15 -2.16 5.87 -105.06 -0.62 -2.78 16 8 C 0.39 6.53 7.12 -30.68 -0.22 6.32 16 9 O -0.45 -8.85 15.98 5.58 0.09 -8.76 16 10 C -0.16 -2.79 4.31 -27.88 -0.12 -2.91 16 11 C -0.10 -2.23 4.44 -26.73 -0.12 -2.34 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 17 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.08 -0.93 9.12 -39.11 -0.36 -1.28 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.13 1.69 7.65 -52.49 -0.40 1.29 16 30 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 31 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 32 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 1.44 7.05 -52.48 -0.37 1.07 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -32.64 316.96 -8.43 -41.07 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -5.79 Total: -4.25 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.22 Total: -23.44 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.64 -8.43 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.063 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds