Wall clock time and date at job start Mon Mar 30 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38396 * 119.91338 * 2 1 4 4 C 1.38406 * 120.34881 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.91659 * 179.97438 * 4 3 2 6 6 C 1.37888 * 120.17026 * 359.97233 * 4 3 2 7 7 C 1.39855 * 119.82486 * 0.02562 * 6 4 3 8 8 C 1.47168 * 120.17344 * 179.72453 * 7 6 4 9 9 O 1.21255 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99955 * 179.97438 * 8 7 6 11 11 C 1.52998 * 109.46720 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46934 * 180.02562 * 11 10 8 13 13 C 1.50709 * 109.47342 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99698 * 0.02562 * 13 12 11 15 15 C 1.37867 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00344 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47000 * 89.99807 * 17 15 13 19 19 H 1.48502 * 109.46817 * 210.00049 * 17 15 13 20 20 H 1.48500 * 109.46741 * 329.99439 * 17 15 13 21 21 C 1.37882 * 119.90784 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47215 * 89.99865 * 1 2 3 23 23 H 1.09000 * 109.47687 * 210.00659 * 1 2 3 24 24 H 1.09006 * 109.46864 * 330.00785 * 1 2 3 25 25 H 1.08002 * 119.83274 * 359.96922 * 3 2 1 26 26 H 1.09001 * 109.46996 * 269.97593 * 5 4 3 27 27 H 1.08994 * 109.46888 * 29.97528 * 5 4 3 28 28 H 1.09005 * 109.47137 * 149.97797 * 5 4 3 29 29 H 1.07999 * 120.08813 * 179.97438 * 6 4 3 30 30 H 1.08992 * 109.47353 * 299.99848 * 10 8 7 31 31 H 1.09001 * 109.47108 * 60.00409 * 10 8 7 32 32 H 1.08997 * 109.47652 * 300.00246 * 11 10 8 33 33 H 1.09006 * 109.47309 * 60.00262 * 11 10 8 34 34 H 1.09000 * 109.47010 * 299.99736 * 12 11 10 35 35 H 1.09001 * 109.47088 * 60.00447 * 12 11 10 36 36 H 0.96998 * 120.00266 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.09422 * 0.04730 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1996 0.0000 4 6 3.5812 1.2101 -0.0005 5 6 4.3229 2.5220 -0.0011 6 6 4.2833 0.0233 -0.0005 7 6 3.5931 -1.1931 -0.0005 8 6 4.3347 -2.4643 -0.0065 9 8 5.5472 -2.4588 -0.0111 10 6 3.5870 -3.7727 -0.0059 11 6 4.5865 -4.9311 -0.0135 12 6 3.8275 -6.2596 -0.0135 13 6 4.8120 -7.4007 -0.0204 14 1 5.8729 -7.1985 -0.0240 15 6 4.3582 -8.7025 -0.0222 16 7 3.0663 -8.9487 -0.0183 17 14 5.5785 -10.1170 -0.0300 18 1 5.9067 -10.4953 1.3679 19 1 4.9813 -11.2820 -0.7310 20 1 6.8174 -9.6979 -0.7334 21 6 2.1946 -1.1952 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6531 2.1325 -0.0005 26 1 4.5017 2.8378 -1.0289 27 1 3.7270 3.2764 0.5124 28 1 5.2765 2.4005 0.5127 29 1 5.3632 0.0331 -0.0013 30 1 2.9647 -3.8352 0.8868 31 1 2.9566 -3.8314 -0.8932 32 1 5.2085 -4.8685 -0.9064 33 1 5.2173 -4.8726 0.8735 34 1 3.2053 -6.3225 0.8792 35 1 3.1971 -6.3178 -0.9008 36 1 2.7471 -9.8647 -0.0192 37 1 1.6546 -2.1306 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:34 Heat of formation + Delta-G solvation = -65.256892 kcal Electronic energy + Delta-G solvation = -16634.949062 eV Core-core repulsion = 13954.146691 eV Total energy + Delta-G solvation = -2680.802371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19300 -39.56808 -36.18970 -34.58675 -34.05784 -33.21539 -29.97221 -28.22622 -27.55224 -26.34223 -24.31697 -22.09835 -21.45968 -20.26212 -18.47959 -17.70213 -16.86235 -16.66758 -16.64582 -16.40688 -15.41653 -15.13218 -14.62388 -14.59795 -14.27585 -14.04014 -13.96255 -13.69080 -13.32317 -13.14531 -12.77909 -12.64929 -12.54699 -12.48759 -12.43185 -12.39798 -11.95979 -11.59252 -11.53246 -11.28480 -10.57895 -10.55845 -9.80359 -9.57701 -8.21435 -6.31900 -0.33465 0.36025 1.38622 1.39921 1.40977 1.51456 2.40143 2.76382 2.98763 3.11282 3.76164 3.84761 4.05761 4.13320 4.21835 4.22332 4.34937 4.38850 4.59185 4.66161 4.81411 4.82907 4.89611 4.92207 4.92893 5.00092 5.08049 5.15890 5.18565 5.32684 5.37138 5.50743 5.53888 5.57733 5.72301 5.84265 5.97534 6.25690 6.51575 6.83295 7.36826 8.90099 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.003810 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.623671 B = 7347.425871 C = 8020.690633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.090 4.090 4 C -0.101 4.101 5 C -0.112 4.112 6 C -0.091 4.091 7 C -0.177 4.177 8 C 0.398 3.602 9 O -0.493 6.493 10 C -0.157 4.157 11 C -0.090 4.090 12 C 0.026 3.974 13 C -0.550 4.550 14 H 0.051 0.949 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.085 4.085 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.001 0.999 35 H 0.001 0.999 36 H 0.265 0.735 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 23.711 0.033 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.107 4.107 4 C -0.101 4.101 5 C -0.169 4.169 6 C -0.109 4.109 7 C -0.178 4.178 8 C 0.279 3.721 9 O -0.371 6.371 10 C -0.194 4.194 11 C -0.128 4.128 12 C -0.011 4.011 13 C -0.588 4.588 14 H 0.069 0.931 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.103 4.103 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.103 0.897 25 H 0.174 0.826 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.496 23.578 0.029 24.210 hybrid contribution 0.709 -1.242 -0.011 1.430 sum -4.787 22.336 0.018 22.843 Atomic orbital electron populations 1.20868 0.88534 1.04093 1.03473 1.20253 0.97952 0.92372 0.99245 1.21541 0.93187 0.98844 0.97159 1.20197 0.94570 0.95561 0.99776 1.20848 1.00076 0.92583 1.03347 1.21386 1.00226 0.91705 0.97598 1.20516 0.95330 0.93998 1.07912 1.22995 0.88514 0.91239 0.69395 1.90470 1.17892 1.90456 1.38304 1.22067 0.99923 0.91759 1.05673 1.21249 0.97253 0.94069 1.00206 1.19014 0.94921 0.91608 0.95547 1.21695 0.93614 0.92556 1.50891 0.93067 1.25918 0.97174 1.01781 0.94619 1.70066 1.14477 1.20866 1.51486 0.85485 0.78940 0.78287 0.78577 1.19661 1.20223 1.19272 1.21599 0.92067 0.99772 0.96870 0.90042 0.90905 0.89716 0.82637 0.90137 0.89402 0.91530 0.86250 0.87010 0.87027 0.94074 0.94048 0.98058 0.98043 0.92613 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.10 -1.75 5.87 -19.91 -0.12 -1.87 16 3 C -0.09 -1.45 9.34 22.35 0.21 -1.24 16 4 C -0.10 -1.95 5.87 -19.91 -0.12 -2.06 16 5 C -0.11 -1.46 10.01 71.24 0.71 -0.74 16 6 C -0.09 -2.34 9.25 22.58 0.21 -2.13 16 7 C -0.18 -4.94 5.87 -20.15 -0.12 -5.06 16 8 C 0.40 13.63 7.12 28.03 0.20 13.83 16 9 O -0.49 -20.27 15.98 -2.95 -0.05 -20.31 16 10 C -0.16 -5.43 4.31 29.85 0.13 -5.30 16 11 C -0.09 -4.08 4.44 30.59 0.14 -3.94 16 12 C 0.03 1.41 4.97 29.85 0.15 1.56 16 13 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -56.87 13.29 21.44 0.28 -56.59 16 17 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.08 -1.92 9.12 22.58 0.21 -1.71 16 22 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 24 H 0.08 0.70 8.08 -2.38 -0.02 0.68 16 25 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.78 8.08 -2.39 -0.02 0.76 16 28 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 29 H 0.12 3.25 7.65 -2.91 -0.02 3.22 16 30 H 0.11 3.46 8.09 -2.39 -0.02 3.44 16 31 H 0.11 3.45 8.08 -2.39 -0.02 3.43 16 32 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 33 H 0.04 1.94 8.10 -2.38 -0.02 1.92 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.14 2.87 7.05 -2.91 -0.02 2.85 16 Total: -1.00 -71.48 316.96 6.30 -65.18 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.03 Total: 5.34 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 3.00 Total: -41.23 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.48 6.30 -65.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.074 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds