Wall clock time and date at job start Mon Mar 30 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.20764 * 120.00022 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99967 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.47159 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47328 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47374 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99910 * 0.02562 * 13 12 11 15 15 C 1.37868 * 119.99864 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00486 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99710 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47328 * 60.00435 * 17 15 13 19 19 H 1.48508 * 109.46978 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47593 * 300.00176 * 17 15 13 21 21 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 23 23 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 24 24 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 25 25 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 27 27 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 28 28 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 29 29 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 30 30 H 1.08997 * 109.47303 * 300.00008 * 10 8 7 31 31 H 1.09001 * 109.46639 * 60.00878 * 10 8 7 32 32 H 1.08996 * 109.47569 * 300.00752 * 11 10 8 33 33 H 1.09004 * 109.47005 * 60.00255 * 11 10 8 34 34 H 1.09001 * 109.46818 * 300.00426 * 12 11 10 35 35 H 1.08995 * 109.46999 * 59.99830 * 12 11 10 36 36 H 0.97004 * 120.00200 * 179.97438 * 16 15 13 37 37 H 1.08001 * 119.99700 * 359.96970 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1933 -2.2572 -2.3392 10 6 5.3265 -4.2200 -1.6968 11 6 5.4447 -4.4263 -3.2082 12 6 6.1967 -5.7290 -3.4879 13 6 6.3138 -5.9319 -4.9766 14 1 5.8942 -5.2042 -5.6554 15 6 6.9574 -7.0459 -5.4720 16 7 7.4689 -7.9318 -4.6455 17 14 7.1019 -7.2977 -7.3173 18 1 7.8438 -6.1591 -7.9157 19 1 7.8319 -8.5622 -7.5887 20 1 5.7443 -7.3725 -7.9145 21 6 2.1981 -1.1970 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.6583 2.1326 0.0004 26 1 4.1204 2.1326 0.0010 27 1 5.3517 -0.0001 -0.0091 28 1 5.2866 -2.3718 0.5133 29 1 3.7450 -3.2618 0.5132 30 1 6.3228 -4.1653 -1.2582 31 1 4.7815 -5.0558 -1.2580 32 1 4.4483 -4.4810 -3.6466 33 1 5.9894 -3.5904 -3.6475 34 1 7.1932 -5.6746 -3.0495 35 1 5.6518 -6.5646 -3.0487 36 1 7.9214 -8.7158 -4.9941 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:17 Heat of formation + Delta-G solvation = -62.976236 kcal Electronic energy + Delta-G solvation = -16550.328439 eV Core-core repulsion = 13869.624965 eV Total energy + Delta-G solvation = -2680.703474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00114 -39.71532 -36.14745 -34.43602 -34.03203 -32.92036 -30.41634 -28.56151 -27.66946 -25.66543 -23.16015 -22.44573 -21.45746 -20.27962 -18.48681 -17.40884 -16.91107 -16.90157 -16.37292 -16.13456 -16.10453 -15.20283 -14.89095 -14.54683 -14.31465 -14.00739 -13.79522 -13.66430 -13.27914 -13.06363 -12.80442 -12.71454 -12.58851 -12.51495 -12.38343 -11.93556 -11.84406 -11.55142 -11.49573 -11.29192 -10.55822 -10.50980 -9.66260 -9.45050 -8.21662 -6.32303 0.43537 0.50098 1.10408 1.38181 1.41070 1.49284 2.39819 2.75829 3.10925 3.32365 3.73440 3.91781 4.06204 4.17067 4.24995 4.26905 4.44102 4.46676 4.51429 4.64508 4.72791 4.81512 4.82361 4.94397 4.98390 5.01434 5.14147 5.18330 5.22624 5.31504 5.51426 5.56750 5.66749 5.71006 5.73928 5.85264 6.15740 6.26108 6.67526 6.83382 7.36519 8.89538 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042948 B = 0.003438 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.801074 B = 8142.088998 C = 8278.655303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.083 4.083 7 C -0.128 4.128 8 C 0.363 3.637 9 O -0.491 6.491 10 C -0.165 4.165 11 C -0.091 4.091 12 C 0.026 3.974 13 C -0.551 4.551 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.130 4.130 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.000 1.000 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 15.570 14.546 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.153 4.153 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.083 4.083 7 C -0.164 4.164 8 C 0.240 3.760 9 O -0.366 6.366 10 C -0.202 4.202 11 C -0.129 4.129 12 C -0.011 4.011 13 C -0.589 4.589 14 H 0.068 0.932 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.148 4.148 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.158 0.842 26 H 0.158 0.842 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.074 0.926 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.329 15.766 14.071 23.522 hybrid contribution 0.383 -0.483 -1.078 1.242 sum -9.946 15.283 12.993 22.390 Atomic orbital electron populations 1.20823 0.89597 1.03759 1.02690 1.20260 0.97479 0.93114 0.99136 1.21327 0.94498 0.98212 1.01219 1.21411 0.94793 0.98498 0.99594 1.21264 1.00475 0.92481 1.00992 1.19740 0.94060 0.94948 0.99558 1.21254 1.03931 0.95893 0.95342 1.25037 0.74453 0.85491 0.90995 1.90394 1.42816 1.54155 1.49252 1.22181 1.03145 0.97399 0.97496 1.21238 0.99161 0.97670 0.94821 1.19016 0.94507 0.92602 0.95022 1.21686 1.36299 1.06981 0.93958 0.93165 1.25914 0.94934 0.95577 1.03051 1.70058 1.38309 1.12037 1.36513 0.85556 0.78611 0.77694 0.79538 1.19417 1.20261 1.19419 1.21147 0.93784 0.98448 1.01422 0.91194 0.90840 0.90094 0.84240 0.84218 0.85376 0.84933 0.85041 0.86904 0.86934 0.94382 0.94373 0.98145 0.98131 0.92601 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.24 0.71 -0.99 16 2 C -0.10 -2.11 5.88 -19.87 -0.12 -2.22 16 3 C -0.13 -2.68 9.70 22.27 0.22 -2.47 16 4 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 5 C -0.13 -3.06 9.70 22.27 0.22 -2.85 16 6 C -0.08 -1.96 4.37 -19.87 -0.09 -2.05 16 7 C -0.13 -2.54 5.77 29.10 0.17 -2.37 16 8 C 0.36 10.57 7.15 29.10 0.21 10.78 16 9 O -0.49 -18.72 15.66 -1.46 -0.02 -18.74 16 10 C -0.17 -5.14 5.64 29.85 0.17 -4.98 16 11 C -0.09 -4.00 4.44 30.59 0.14 -3.86 16 12 C 0.03 1.37 4.97 29.85 0.15 1.51 16 13 C -0.55 -32.74 9.11 25.60 0.23 -32.50 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 15 C 0.00 0.19 5.46 84.65 0.46 0.66 16 16 N -0.93 -56.74 13.29 21.44 0.28 -56.46 16 17 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 C -0.13 -3.02 9.36 22.27 0.21 -2.81 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 24 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 25 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 26 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 27 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 28 H 0.13 1.94 8.09 -2.38 -0.02 1.92 16 29 H 0.13 1.94 8.09 -2.39 -0.02 1.93 16 30 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -72.63 318.95 6.21 -66.42 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.02 Total: 7.89 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 2.90 Total: -46.51 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.02 Total: -18.74 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.63 6.21 -66.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.444 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds