Wall clock time and date at job start Mon Mar 30 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99585 * 2 1 4 4 C 1.38474 * 119.79230 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.71259 * 180.02562 * 4 3 2 6 6 C 1.38000 * 119.83443 * 359.88944 * 5 4 3 7 7 C 1.50707 * 119.67040 * 179.97438 * 6 5 4 8 8 C 1.38910 * 120.66123 * 359.97438 * 6 5 4 9 9 C 1.37611 * 119.71852 * 0.22456 * 8 6 5 10 10 C 1.50623 * 122.58339 * 179.63916 * 9 8 6 11 11 C 1.52730 * 110.59694 * 17.75985 * 10 9 8 12 12 C 1.53327 * 108.37997 * 308.92405 * 11 10 9 13 13 H 1.08999 * 109.68475 * 310.09975 * 12 11 10 14 14 C 1.50694 * 109.68358 * 189.58054 * 12 11 10 15 15 H 1.08006 * 120.00191 * 246.16140 * 14 12 11 16 16 C 1.37882 * 120.00307 * 66.15844 * 14 12 11 17 17 N 1.31508 * 120.00522 * 195.08674 * 16 14 12 18 18 Si 1.86808 * 119.99633 * 15.08731 * 16 14 12 19 19 H 1.48491 * 109.46998 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47024 * 59.99904 * 18 16 14 21 21 H 1.48500 * 109.46766 * 299.99945 * 18 16 14 22 22 C 1.50655 * 117.71773 * 180.54547 * 8 6 5 23 23 H 1.09007 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47252 * 300.00172 * 1 2 3 25 25 H 1.08993 * 109.46956 * 60.00209 * 1 2 3 26 26 H 1.08005 * 120.14021 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.08573 * 179.86336 * 5 4 3 28 28 H 1.09006 * 109.46562 * 90.00223 * 7 6 5 29 29 H 1.08993 * 109.47048 * 209.99861 * 7 6 5 30 30 H 1.08999 * 109.47187 * 330.00182 * 7 6 5 31 31 H 1.09004 * 109.25215 * 257.46957 * 10 9 8 32 32 H 1.09006 * 109.25141 * 138.05221 * 10 9 8 33 33 H 1.09001 * 109.68506 * 189.20137 * 11 10 9 34 34 H 1.09001 * 109.71240 * 68.66705 * 11 10 9 35 35 H 0.97004 * 119.99820 * 354.63797 * 17 16 14 36 36 H 1.09007 * 109.23050 * 77.14949 * 22 8 6 37 37 H 1.08999 * 109.28870 * 317.71652 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2875 2.3695 0.0005 5 6 1.9161 3.5993 0.0000 6 6 3.2945 3.6657 0.0012 7 6 3.9767 5.0096 0.0001 8 6 4.0596 2.5063 0.0036 9 6 3.4379 1.2787 0.0000 10 6 4.2036 -0.0184 -0.0058 11 6 5.6498 0.2095 0.4291 12 6 6.2323 1.3534 -0.4094 13 1 6.0389 1.1693 -1.4662 14 6 7.7177 1.4495 -0.1746 15 1 8.1320 2.3184 0.3150 16 6 8.5481 0.4280 -0.5849 17 7 9.7804 0.3596 -0.1307 18 14 7.9226 -0.8588 -1.7859 19 1 9.0012 -1.8402 -2.0660 20 1 7.5146 -0.1978 -3.0515 21 1 6.7549 -1.5609 -1.1954 22 6 5.5587 2.6560 0.0175 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2090 2.3116 0.0005 27 1 1.3305 4.5067 -0.0018 28 1 4.1401 5.3349 1.0275 29 1 4.9352 4.9300 -0.5127 30 1 3.3480 5.7357 -0.5153 31 1 4.1927 -0.4377 -1.0119 32 1 3.7281 -0.7195 0.6802 33 1 6.2301 -0.6985 0.2648 34 1 5.6782 0.4772 1.4854 35 1 10.1303 1.0690 0.4309 36 1 5.8842 2.9155 1.0249 37 1 5.8474 3.4518 -0.6690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:08 Heat of formation + Delta-G solvation = -36.391465 kcal Electronic energy + Delta-G solvation = -18072.681220 eV Core-core repulsion = 15393.130548 eV Total energy + Delta-G solvation = -2679.550672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29997 -38.05797 -35.72457 -32.83237 -32.20500 -29.97630 -29.10234 -27.63974 -25.65739 -24.64980 -22.64064 -21.03176 -20.38390 -18.49164 -17.65744 -17.19868 -16.23940 -15.66178 -14.83118 -14.34651 -13.86644 -13.73111 -13.59374 -13.12737 -13.07104 -12.78843 -12.48716 -12.11670 -11.94997 -11.68238 -11.54147 -11.25661 -10.95897 -10.83740 -10.55156 -10.45631 -10.12169 -9.80182 -9.62793 -9.24297 -8.67360 -8.19385 -8.14297 -7.66889 -6.38332 -4.00530 1.67728 1.70392 3.43883 3.44978 3.48588 3.66578 4.00628 4.54873 4.93663 5.04377 5.11868 5.12335 5.23717 5.32998 5.41163 5.50793 5.58201 5.72259 5.83977 5.92948 5.96995 5.99190 6.15601 6.26036 6.41175 6.43679 6.58937 6.60435 6.71530 6.73403 6.90546 6.99316 7.11170 7.28534 7.37654 7.60035 7.65678 8.20967 8.42982 8.96208 9.68109 11.01356 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.007718 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.707541 B = 3627.053657 C = 4514.821462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.113 3.887 4 C -0.219 4.219 5 C -0.092 4.092 6 C -0.129 4.129 7 C -0.112 4.112 8 C -0.027 4.027 9 C -0.092 4.092 10 C -0.074 4.074 11 C -0.122 4.122 12 C 0.020 3.980 13 H 0.023 0.977 14 C -0.594 4.594 15 H 0.055 0.945 16 C 0.029 3.971 17 N -0.912 5.912 18 Si 1.045 2.955 19 H -0.288 1.288 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.066 4.066 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.071 0.929 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.003 3.384 -0.043 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.168 4.168 8 C -0.027 4.027 9 C -0.093 4.093 10 C -0.111 4.111 11 C -0.159 4.159 12 C 0.001 3.999 13 H 0.041 0.959 14 C -0.632 4.632 15 H 0.073 0.927 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.874 3.126 19 H -0.214 1.214 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.102 4.102 23 H 0.113 0.887 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.492 1.785 -0.809 17.601 hybrid contribution -0.898 1.667 0.831 2.068 sum -18.390 3.452 0.022 18.711 Atomic orbital electron populations 1.22971 0.79308 1.03374 1.00931 1.86077 1.20519 1.27296 1.88950 1.19041 0.91927 0.83826 0.98349 1.20957 0.99204 0.92500 1.11110 1.20586 0.93839 0.96581 1.00024 1.19859 0.93288 0.95342 1.04384 1.20794 1.00888 0.93219 1.01930 1.19794 0.97175 0.90570 0.95208 1.19118 0.89648 0.96109 1.04420 1.20405 0.96569 0.92815 1.01354 1.22085 0.92365 1.01181 1.00296 1.19012 0.95924 0.90273 0.94665 0.95879 1.22005 0.90681 1.07766 1.42741 0.92709 1.25753 0.94881 0.99442 0.97432 1.70859 1.17687 1.32989 1.33113 0.84046 0.75717 0.76355 0.76529 1.21404 1.21059 1.19719 1.20591 0.87540 1.00611 1.01484 0.88661 0.93074 0.93035 0.86160 0.86505 0.91721 0.90819 0.92389 0.91608 0.91795 0.91489 0.92953 0.92402 0.91089 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.82 9.53 -19.43 -0.19 -5.01 16 3 C 0.11 1.90 6.65 -39.08 -0.26 1.64 16 4 C -0.22 -3.17 9.02 -39.54 -0.36 -3.52 16 5 C -0.09 -1.33 9.67 -39.71 -0.38 -1.71 16 6 C -0.13 -2.08 5.89 -104.46 -0.62 -2.69 16 7 C -0.11 -1.52 9.51 36.01 0.34 -1.18 16 8 C -0.03 -0.52 5.74 -104.62 -0.60 -1.12 16 9 C -0.09 -1.75 5.75 -104.47 -0.60 -2.35 16 10 C -0.07 -1.47 5.28 -28.06 -0.15 -1.61 16 11 C -0.12 -2.72 4.89 -26.70 -0.13 -2.85 16 12 C 0.02 0.48 1.68 -91.74 -0.15 0.33 16 13 H 0.02 0.57 6.81 -51.93 -0.35 0.21 16 14 C -0.59 -16.64 8.83 -34.44 -0.30 -16.94 16 15 H 0.05 1.63 8.00 -52.48 -0.42 1.21 16 16 C 0.03 0.85 5.32 -17.82 -0.09 0.75 16 17 N -0.91 -28.18 13.69 55.43 0.76 -27.42 16 18 Si 1.04 25.58 26.24 -169.99 -4.46 21.12 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.12 5.72 56.52 0.32 -5.80 16 22 C -0.07 -1.36 4.23 -28.04 -0.12 -1.48 16 23 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 25 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 26 H 0.12 1.39 6.27 -52.48 -0.33 1.06 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.05 5.94 -51.93 -0.31 0.74 16 30 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.18 7.75 -51.93 -0.40 0.78 16 33 H 0.07 1.57 4.84 -51.93 -0.25 1.32 16 34 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 36 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 37 H 0.07 1.38 6.27 -51.93 -0.33 1.06 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -30.95 288.34 -7.34 -38.29 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.37 Total: 0.12 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -2.43 Total: -31.45 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.76 Total: -27.42 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.19 Total: -5.01 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.46 Total: 21.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.95 -7.34 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.897 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds