Wall clock time and date at job start Mon Mar 30 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99585 * 2 1 4 4 C 1.38474 * 119.79230 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.71259 * 180.02562 * 4 3 2 6 6 C 1.38000 * 119.83443 * 359.88944 * 5 4 3 7 7 C 1.50707 * 119.67040 * 179.97438 * 6 5 4 8 8 C 1.38910 * 120.66123 * 359.97438 * 6 5 4 9 9 C 1.37611 * 119.71852 * 0.22456 * 8 6 5 10 10 C 1.50623 * 122.58339 * 179.63916 * 9 8 6 11 11 C 1.52730 * 110.59694 * 17.75985 * 10 9 8 12 12 C 1.53327 * 108.37997 * 308.92405 * 11 10 9 13 13 H 1.08999 * 109.68475 * 310.09975 * 12 11 10 14 14 C 1.50694 * 109.68358 * 189.58054 * 12 11 10 15 15 H 1.08006 * 120.00191 * 246.16140 * 14 12 11 16 16 C 1.37882 * 120.00307 * 66.15844 * 14 12 11 17 17 N 1.31508 * 120.00522 * 195.08674 * 16 14 12 18 18 Si 1.86808 * 119.99633 * 15.08731 * 16 14 12 19 19 H 1.48491 * 109.46998 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47024 * 59.99904 * 18 16 14 21 21 H 1.48500 * 109.46766 * 299.99945 * 18 16 14 22 22 C 1.50655 * 117.71773 * 180.54547 * 8 6 5 23 23 H 1.09007 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47252 * 300.00172 * 1 2 3 25 25 H 1.08993 * 109.46956 * 60.00209 * 1 2 3 26 26 H 1.08005 * 120.14021 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.08573 * 179.86336 * 5 4 3 28 28 H 1.09006 * 109.46562 * 90.00223 * 7 6 5 29 29 H 1.08993 * 109.47048 * 209.99861 * 7 6 5 30 30 H 1.08999 * 109.47187 * 330.00182 * 7 6 5 31 31 H 1.09004 * 109.25215 * 257.46957 * 10 9 8 32 32 H 1.09006 * 109.25141 * 138.05221 * 10 9 8 33 33 H 1.09001 * 109.68506 * 189.20137 * 11 10 9 34 34 H 1.09001 * 109.71240 * 68.66705 * 11 10 9 35 35 H 0.97004 * 119.99820 * 354.63797 * 17 16 14 36 36 H 1.09007 * 109.23050 * 77.14949 * 22 8 6 37 37 H 1.08999 * 109.28870 * 317.71652 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2875 2.3695 0.0005 5 6 1.9161 3.5993 0.0000 6 6 3.2945 3.6657 0.0012 7 6 3.9767 5.0096 0.0001 8 6 4.0596 2.5063 0.0036 9 6 3.4379 1.2787 0.0000 10 6 4.2036 -0.0184 -0.0058 11 6 5.6498 0.2095 0.4291 12 6 6.2323 1.3534 -0.4094 13 1 6.0389 1.1693 -1.4662 14 6 7.7177 1.4495 -0.1746 15 1 8.1320 2.3184 0.3150 16 6 8.5481 0.4280 -0.5849 17 7 9.7804 0.3596 -0.1307 18 14 7.9226 -0.8588 -1.7859 19 1 9.0012 -1.8402 -2.0660 20 1 7.5146 -0.1978 -3.0515 21 1 6.7549 -1.5609 -1.1954 22 6 5.5587 2.6560 0.0175 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2090 2.3116 0.0005 27 1 1.3305 4.5067 -0.0018 28 1 4.1401 5.3349 1.0275 29 1 4.9352 4.9300 -0.5127 30 1 3.3480 5.7357 -0.5153 31 1 4.1927 -0.4377 -1.0119 32 1 3.7281 -0.7195 0.6802 33 1 6.2301 -0.6985 0.2648 34 1 5.6782 0.4772 1.4854 35 1 10.1303 1.0690 0.4309 36 1 5.8842 2.9155 1.0249 37 1 5.8474 3.4518 -0.6690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259839475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:08 Heat of formation + Delta-G solvation = -54.415345 kcal Electronic energy + Delta-G solvation = -18073.462794 eV Core-core repulsion = 15393.130548 eV Total energy + Delta-G solvation = -2680.332246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53720 -39.29174 -37.27687 -34.67335 -33.71390 -31.52401 -30.56514 -28.65860 -26.73610 -26.47374 -24.19335 -22.73423 -21.58637 -20.15778 -19.67475 -18.49259 -17.46974 -16.69306 -16.27442 -15.72261 -15.46181 -15.14446 -14.89268 -14.73416 -14.50178 -14.30887 -14.07478 -13.34419 -13.30238 -13.19710 -12.68218 -12.60897 -12.43402 -12.37909 -12.24072 -11.76025 -11.64308 -11.60402 -11.45873 -11.03335 -10.70548 -10.38859 -9.49280 -8.84330 -8.71493 -6.34391 0.42784 0.49814 1.46087 1.52282 1.72230 2.44632 2.49062 2.77671 3.08621 3.81003 3.84603 4.06176 4.20987 4.25013 4.27700 4.34291 4.44074 4.49644 4.52797 4.66655 4.69950 4.75516 4.83252 4.86585 4.89498 4.96231 5.08791 5.15689 5.22245 5.31519 5.36483 5.50551 5.59772 5.71739 5.84822 5.94599 6.04570 6.13481 6.54844 6.61013 7.42663 8.67055 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.007718 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.707541 B = 3627.053657 C = 4514.821462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.109 3.891 4 C -0.209 4.209 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.111 4.111 8 C -0.052 4.052 9 C -0.123 4.123 10 C -0.065 4.065 11 C -0.116 4.116 12 C 0.018 3.982 13 H 0.021 0.979 14 C -0.595 4.595 15 H 0.020 0.980 16 C -0.021 4.021 17 N -0.944 5.944 18 Si 1.079 2.921 19 H -0.290 1.290 20 H -0.267 1.267 21 H -0.242 1.242 22 C -0.056 4.056 23 H 0.116 0.884 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.251 0.749 36 H 0.055 0.945 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.056 3.638 -0.775 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.064 3.936 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.137 4.137 7 C -0.167 4.167 8 C -0.052 4.052 9 C -0.124 4.124 10 C -0.102 4.102 11 C -0.154 4.154 12 C -0.001 4.001 13 H 0.040 0.960 14 C -0.633 4.633 15 H 0.038 0.962 16 C -0.218 4.218 17 N -0.580 5.580 18 Si 0.901 3.099 19 H -0.216 1.216 20 H -0.192 1.192 21 H -0.166 1.166 22 C -0.093 4.093 23 H 0.134 0.866 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.174 0.826 27 H 0.172 0.828 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.572 2.057 -1.527 21.723 hybrid contribution 0.282 1.671 1.117 2.030 sum -21.290 3.728 -0.410 21.618 Atomic orbital electron populations 1.23331 0.76596 1.05375 1.02236 1.86047 1.23316 1.26831 1.88738 1.19057 0.91252 0.85243 0.98045 1.21376 1.00925 0.91571 1.08907 1.21014 0.93114 0.98145 0.97860 1.20108 0.94370 0.95191 1.04066 1.20821 1.00541 0.92806 1.02566 1.19622 0.95649 0.92064 0.97882 1.19121 0.91173 0.95369 1.06712 1.20245 0.94443 0.94099 1.01398 1.21908 0.94460 0.99624 0.99367 1.18967 0.93381 0.92879 0.94862 0.96048 1.22266 0.93413 1.06275 1.41376 0.96196 1.27131 0.94427 1.01847 0.98385 1.70985 1.19115 1.33201 1.34729 0.83635 0.76307 0.74610 0.75340 1.21588 1.19208 1.16605 1.20354 0.89711 0.98762 1.00476 0.86588 0.91675 0.91615 0.82615 0.82789 0.91043 0.92353 0.89584 0.91622 0.90799 0.92821 0.93967 0.93987 0.92676 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -9.23 9.53 -92.43 -0.88 -10.11 16 3 C 0.11 3.34 6.65 22.60 0.15 3.49 16 4 C -0.21 -5.11 9.02 22.30 0.20 -4.91 16 5 C -0.08 -2.03 9.67 22.19 0.21 -1.82 16 6 C -0.14 -4.11 5.89 -19.76 -0.12 -4.22 16 7 C -0.11 -2.78 9.51 71.24 0.68 -2.11 16 8 C -0.05 -1.92 5.74 -19.87 -0.11 -2.04 16 9 C -0.12 -4.51 5.75 -19.77 -0.11 -4.63 16 10 C -0.06 -2.50 5.28 29.73 0.16 -2.34 16 11 C -0.12 -5.24 4.89 30.61 0.15 -5.09 16 12 C 0.02 0.88 1.68 -11.52 -0.02 0.86 16 13 H 0.02 1.05 6.81 -2.39 -0.02 1.04 16 14 C -0.60 -34.80 8.83 25.60 0.23 -34.57 16 15 H 0.02 1.26 8.00 -2.91 -0.02 1.23 16 16 C -0.02 -1.23 5.32 84.66 0.45 -0.78 16 17 N -0.94 -60.66 13.69 21.45 0.29 -60.36 16 18 Si 1.08 51.81 26.24 68.60 1.80 53.61 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.24 -10.41 5.72 99.48 0.57 -9.84 16 22 C -0.06 -2.39 4.23 29.75 0.13 -2.26 16 23 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.06 0.87 7.65 -2.39 -0.02 0.86 16 25 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 26 H 0.16 2.65 6.27 -2.91 -0.02 2.63 16 27 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.63 5.94 -2.39 -0.01 1.62 16 30 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.07 2.65 7.75 -2.38 -0.02 2.63 16 33 H 0.05 2.52 4.84 -2.39 -0.01 2.51 16 34 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 36 H 0.05 2.44 8.11 -2.38 -0.02 2.42 16 37 H 0.07 2.87 6.27 -2.39 -0.01 2.86 16 Total: -1.00 -69.66 288.34 5.19 -64.46 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.88 Total: 11.41 kcal Atomic # 6 Polarization: -62.10 SS G_CDS: 3.10 Total: -59.00 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.29 Total: -60.36 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.88 Total: -10.11 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 1.80 Total: 53.61 kcal Total: -69.66 5.19 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.045 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds