Wall clock time and date at job start Mon Mar 30 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99924 * 2 1 4 4 C 1.38215 * 120.00131 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99547 * 359.97438 * 4 3 2 6 6 C 1.38210 * 120.00359 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00114 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47369 * 184.79592 * 7 6 5 9 9 C 1.50701 * 109.47116 * 304.80103 * 7 6 5 10 10 H 1.07993 * 120.00055 * 95.17046 * 9 7 6 11 11 C 1.37880 * 119.99614 * 275.17512 * 9 7 6 12 12 N 1.31510 * 119.99956 * 355.29952 * 11 9 7 13 13 Si 1.86795 * 119.99818 * 175.30691 * 11 9 7 14 14 H 1.48499 * 109.47352 * 59.99572 * 13 11 9 15 15 H 1.48498 * 109.47287 * 299.99438 * 13 11 9 16 16 H 1.48497 * 109.47055 * 179.97438 * 13 11 9 17 17 C 1.52999 * 109.47119 * 64.79724 * 7 6 5 18 18 H 1.09004 * 110.75350 * 300.14021 * 17 7 6 19 19 C 1.55311 * 110.85001 * 63.83572 * 17 7 6 20 20 C 1.54946 * 100.94241 * 152.32160 * 19 17 7 21 21 O 1.43643 * 105.13893 * 323.55809 * 20 19 17 22 22 C 1.43236 * 109.97121 * 24.42517 * 21 20 19 23 23 C 1.38210 * 119.99933 * 180.27622 * 2 1 3 24 24 H 1.08996 * 109.47023 * 90.00073 * 1 2 3 25 25 H 1.09002 * 109.46906 * 210.00109 * 1 2 3 26 26 H 1.08996 * 109.46741 * 329.99749 * 1 2 3 27 27 H 1.08002 * 119.99934 * 359.97438 * 3 2 1 28 28 H 1.07991 * 120.00133 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.99423 * 179.97438 * 5 4 3 30 30 H 0.97003 * 120.00176 * 5.41432 * 12 11 9 31 31 H 1.08994 * 111.12605 * 270.24482 * 19 17 7 32 32 H 1.09007 * 111.12188 * 34.39987 * 19 17 7 33 33 H 1.09005 * 110.30609 * 204.64136 * 20 19 17 34 34 H 1.08996 * 110.39198 * 82.51659 * 20 19 17 35 35 H 1.09000 * 109.83303 * 238.77668 * 22 21 20 36 36 H 1.09000 * 109.90684 * 117.84583 * 22 21 20 37 37 H 1.07998 * 120.00137 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 4.3342 -2.5020 -0.0011 8 1 3.6290 -3.3287 -0.0869 9 6 5.2872 -2.5314 -1.1682 10 1 6.3171 -2.2364 -1.0319 11 6 4.8441 -2.9347 -2.4100 12 7 3.6159 -3.3814 -2.5567 13 14 5.9883 -2.8468 -3.8838 14 1 7.1814 -3.6953 -3.6355 15 1 6.4163 -1.4406 -4.0951 16 1 5.2771 -3.3350 -5.0925 17 6 5.1217 -2.6369 1.3037 18 1 5.8327 -1.8178 1.4121 19 6 4.1627 -2.7071 2.5234 20 6 5.0167 -3.5281 3.5221 21 8 5.7192 -4.4867 2.7154 22 6 5.8405 -4.0014 1.3732 23 6 2.1981 -1.1969 -0.0058 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 5.3517 0.0001 -0.0014 30 1 2.9973 -3.3540 -1.8100 31 1 3.9500 -1.7119 2.9137 32 1 3.2419 -3.2324 2.2693 33 1 4.3738 -4.0368 4.2405 34 1 5.7231 -2.8796 4.0403 35 1 5.3711 -4.7021 0.6828 36 1 6.8927 -3.8785 1.1167 37 1 1.6582 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259864012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:46 Heat of formation + Delta-G solvation = -46.453121 kcal Electronic energy + Delta-G solvation = -18157.545497 eV Core-core repulsion = 15477.558519 eV Total energy + Delta-G solvation = -2679.986978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30612 -38.26893 -34.77116 -32.10739 -31.68535 -30.11922 -28.99204 -26.49956 -25.74057 -23.42636 -21.71061 -21.37739 -20.70541 -19.14760 -16.80203 -16.20425 -15.64304 -15.36388 -14.64046 -14.05046 -14.00501 -13.76456 -13.32436 -13.08612 -12.70102 -12.52686 -12.32776 -12.27252 -11.82036 -11.51549 -11.01224 -10.95738 -10.86492 -10.69938 -10.46675 -10.34978 -10.15045 -9.91859 -9.62125 -9.01203 -8.77090 -8.39831 -8.01178 -7.64906 -6.42306 -4.15965 2.12963 2.21800 3.40161 3.41899 3.59674 4.43162 4.45602 4.57233 5.12383 5.29444 5.35091 5.39395 5.47578 5.52537 5.68990 5.74389 5.77133 5.91514 5.93290 6.07258 6.09760 6.15595 6.26621 6.27956 6.37313 6.46719 6.56641 6.64161 6.71880 6.87660 6.93929 7.17029 7.21310 7.35247 7.54044 7.65085 7.82764 8.09318 8.33656 8.78028 9.55526 10.95546 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.011721 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.307860 B = 2388.293080 C = 3879.249988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.126 4.126 5 C -0.112 4.112 6 C -0.024 4.024 7 C 0.070 3.930 8 H 0.043 0.957 9 C -0.590 4.590 10 H 0.052 0.948 11 C 0.027 3.973 12 N -0.902 5.902 13 Si 1.063 2.937 14 H -0.287 1.287 15 H -0.287 1.287 16 H -0.283 1.283 17 C -0.094 4.094 18 H 0.070 0.930 19 C -0.154 4.154 20 C 0.052 3.948 21 O -0.398 6.398 22 C 0.067 3.933 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.271 0.729 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 5.187 7.447 9.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.094 4.094 3 C -0.169 4.169 4 C -0.144 4.144 5 C -0.130 4.130 6 C -0.024 4.024 7 C 0.051 3.949 8 H 0.061 0.939 9 C -0.627 4.627 10 H 0.071 0.929 11 C -0.179 4.179 12 N -0.537 5.537 13 Si 0.891 3.109 14 H -0.213 1.213 15 H -0.214 1.214 16 H -0.208 1.208 17 C -0.113 4.113 18 H 0.088 0.912 19 C -0.191 4.191 20 C -0.024 4.024 21 O -0.318 6.318 22 C -0.009 4.009 23 C -0.147 4.147 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.571 4.609 5.891 7.643 hybrid contribution -0.184 0.811 1.349 1.585 sum -1.756 5.420 7.240 9.213 Atomic orbital electron populations 1.20711 0.92315 1.01697 1.01710 1.19765 0.95198 0.93526 1.00959 1.20689 0.94210 0.96600 1.05446 1.20996 0.94178 0.97602 1.01658 1.20897 0.99689 0.91766 1.00661 1.20709 0.92799 0.97283 0.91621 1.18033 0.94440 0.90345 0.92040 0.93890 1.21774 0.96389 1.50150 0.94423 0.92937 1.25758 0.98883 0.92758 1.00499 1.70786 1.05738 1.41249 1.35959 0.83625 0.74874 0.76502 0.75918 1.21332 1.21390 1.20789 1.22636 0.96591 0.96745 0.95301 0.91162 1.23341 0.99292 1.00271 0.96232 1.23270 0.94047 0.91152 0.93971 1.88320 1.77818 1.43835 1.21840 1.23093 1.00034 0.95643 0.82143 1.20913 0.94271 0.96597 1.02884 0.91784 0.92124 0.92402 0.87593 0.87430 0.86793 0.91709 0.90870 0.90851 0.90817 0.93087 0.90627 0.92002 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 36.01 0.36 -1.19 16 2 C -0.09 -1.71 5.88 -104.62 -0.62 -2.33 16 3 C -0.15 -2.63 9.70 -39.58 -0.38 -3.02 16 4 C -0.13 -2.29 10.05 -39.58 -0.40 -2.68 16 5 C -0.11 -2.29 8.83 -39.58 -0.35 -2.64 16 6 C -0.02 -0.51 4.25 -104.63 -0.44 -0.95 16 7 C 0.07 1.60 1.05 -92.92 -0.10 1.50 16 8 H 0.04 1.08 6.41 -51.93 -0.33 0.75 16 9 C -0.59 -15.14 7.19 -34.44 -0.25 -15.39 16 10 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 11 C 0.03 0.73 5.45 -17.82 -0.10 0.63 16 12 N -0.90 -26.00 13.62 55.43 0.76 -25.24 16 13 Si 1.06 24.49 29.91 -169.99 -5.08 19.40 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 C -0.09 -1.86 2.36 -88.67 -0.21 -2.06 16 18 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 19 C -0.15 -2.62 6.09 -24.48 -0.15 -2.77 16 20 C 0.05 0.83 7.78 38.18 0.30 1.12 16 21 O -0.40 -7.62 11.36 -35.23 -0.40 -8.02 16 22 C 0.07 1.33 6.86 37.88 0.26 1.59 16 23 C -0.13 -2.63 9.33 -39.58 -0.37 -3.00 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 26 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.11 2.31 7.79 -52.49 -0.41 1.90 16 30 H 0.27 7.73 6.66 -40.82 -0.27 7.45 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.28 8.04 -51.92 -0.42 0.86 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.65 7.80 -51.93 -0.40 1.24 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.11 2.20 7.95 -52.49 -0.42 1.78 16 LS Contribution 304.28 15.07 4.59 4.59 Total: -1.00 -28.50 304.28 -8.25 -36.75 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.66 Total: 3.72 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -2.44 Total: -31.18 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.76 Total: -25.24 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.40 Total: -8.02 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.50 -8.25 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259864012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.705 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds