Wall clock time and date at job start Mon Mar 30 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99924 * 2 1 4 4 C 1.38215 * 120.00131 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99547 * 359.97438 * 4 3 2 6 6 C 1.38210 * 120.00359 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00114 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47369 * 184.79592 * 7 6 5 9 9 C 1.50701 * 109.47116 * 304.80103 * 7 6 5 10 10 H 1.07993 * 120.00055 * 95.17046 * 9 7 6 11 11 C 1.37880 * 119.99614 * 275.17512 * 9 7 6 12 12 N 1.31510 * 119.99956 * 355.29952 * 11 9 7 13 13 Si 1.86795 * 119.99818 * 175.30691 * 11 9 7 14 14 H 1.48499 * 109.47352 * 59.99572 * 13 11 9 15 15 H 1.48498 * 109.47287 * 299.99438 * 13 11 9 16 16 H 1.48497 * 109.47055 * 179.97438 * 13 11 9 17 17 C 1.52999 * 109.47119 * 64.79724 * 7 6 5 18 18 H 1.09004 * 110.75350 * 300.14021 * 17 7 6 19 19 C 1.55311 * 110.85001 * 63.83572 * 17 7 6 20 20 C 1.54946 * 100.94241 * 152.32160 * 19 17 7 21 21 O 1.43643 * 105.13893 * 323.55809 * 20 19 17 22 22 C 1.43236 * 109.97121 * 24.42517 * 21 20 19 23 23 C 1.38210 * 119.99933 * 180.27622 * 2 1 3 24 24 H 1.08996 * 109.47023 * 90.00073 * 1 2 3 25 25 H 1.09002 * 109.46906 * 210.00109 * 1 2 3 26 26 H 1.08996 * 109.46741 * 329.99749 * 1 2 3 27 27 H 1.08002 * 119.99934 * 359.97438 * 3 2 1 28 28 H 1.07991 * 120.00133 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.99423 * 179.97438 * 5 4 3 30 30 H 0.97003 * 120.00176 * 5.41432 * 12 11 9 31 31 H 1.08994 * 111.12605 * 270.24482 * 19 17 7 32 32 H 1.09007 * 111.12188 * 34.39987 * 19 17 7 33 33 H 1.09005 * 110.30609 * 204.64136 * 20 19 17 34 34 H 1.08996 * 110.39198 * 82.51659 * 20 19 17 35 35 H 1.09000 * 109.83303 * 238.77668 * 22 21 20 36 36 H 1.09000 * 109.90684 * 117.84583 * 22 21 20 37 37 H 1.07998 * 120.00137 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 4.3342 -2.5020 -0.0011 8 1 3.6290 -3.3287 -0.0869 9 6 5.2872 -2.5314 -1.1682 10 1 6.3171 -2.2364 -1.0319 11 6 4.8441 -2.9347 -2.4100 12 7 3.6159 -3.3814 -2.5567 13 14 5.9883 -2.8468 -3.8838 14 1 7.1814 -3.6953 -3.6355 15 1 6.4163 -1.4406 -4.0951 16 1 5.2771 -3.3350 -5.0925 17 6 5.1217 -2.6369 1.3037 18 1 5.8327 -1.8178 1.4121 19 6 4.1627 -2.7071 2.5234 20 6 5.0167 -3.5281 3.5221 21 8 5.7192 -4.4867 2.7154 22 6 5.8405 -4.0014 1.3732 23 6 2.1981 -1.1969 -0.0058 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 5.3517 0.0001 -0.0014 30 1 2.9973 -3.3540 -1.8100 31 1 3.9500 -1.7119 2.9137 32 1 3.2419 -3.2324 2.2693 33 1 4.3738 -4.0368 4.2405 34 1 5.7231 -2.8796 4.0403 35 1 5.3711 -4.7021 0.6828 36 1 6.8927 -3.8785 1.1167 37 1 1.6582 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259864012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:46 Heat of formation + Delta-G solvation = -61.022832 kcal Electronic energy + Delta-G solvation = -18158.177287 eV Core-core repulsion = 15477.558519 eV Total energy + Delta-G solvation = -2680.618768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85011 -39.74169 -36.48607 -33.87351 -33.15100 -31.63387 -30.49779 -28.00893 -27.34114 -25.28312 -23.15533 -22.85873 -22.23522 -20.79521 -18.69614 -17.71498 -17.11334 -16.87848 -16.16135 -15.66058 -15.51354 -15.44213 -14.85399 -14.58169 -14.26598 -14.08742 -13.89116 -13.78828 -13.04202 -12.96836 -12.67220 -12.56253 -12.42498 -12.26600 -12.05802 -11.92464 -11.80493 -11.52961 -11.32744 -10.68964 -10.47930 -10.40584 -9.51054 -9.20261 -8.54074 -6.26908 0.63523 0.72272 1.52114 1.58717 1.76330 2.56680 2.97457 3.04838 3.24798 3.68941 3.87537 4.05217 4.10737 4.14464 4.31297 4.32484 4.37603 4.47741 4.60410 4.71497 4.78614 4.81785 4.82019 4.84621 4.97113 4.98295 5.03218 5.06724 5.15127 5.35076 5.44950 5.48771 5.73542 5.84692 5.91376 6.04954 6.18873 6.26962 6.35885 6.68880 7.51244 8.83811 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.011721 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.307860 B = 2388.293080 C = 3879.249988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.122 4.122 5 C -0.133 4.133 6 C -0.043 4.043 7 C 0.074 3.926 8 H 0.008 0.992 9 C -0.586 4.586 10 H 0.049 0.951 11 C -0.023 4.023 12 N -0.936 5.936 13 Si 1.101 2.899 14 H -0.271 1.271 15 H -0.274 1.274 16 H -0.290 1.290 17 C -0.093 4.093 18 H 0.073 0.927 19 C -0.144 4.144 20 C 0.051 3.949 21 O -0.410 6.410 22 C 0.073 3.927 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.260 0.740 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 7.409 8.504 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.166 4.166 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.043 4.043 7 C 0.055 3.945 8 H 0.027 0.973 9 C -0.624 4.624 10 H 0.067 0.933 11 C -0.223 4.223 12 N -0.573 5.573 13 Si 0.925 3.075 14 H -0.196 1.196 15 H -0.199 1.199 16 H -0.216 1.216 17 C -0.111 4.111 18 H 0.092 0.908 19 C -0.182 4.182 20 C -0.025 4.025 21 O -0.331 6.331 22 C -0.003 4.003 23 C -0.169 4.169 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.673 6.837 6.977 9.911 hybrid contribution -0.190 0.167 1.108 1.137 sum -1.862 7.004 8.085 10.858 Atomic orbital electron populations 1.20769 0.89617 1.03398 1.02451 1.20197 0.97312 0.92846 0.99291 1.21144 0.94149 0.97710 1.03604 1.21360 0.94853 0.97840 0.99901 1.20959 0.99597 0.92395 1.02210 1.20526 0.93371 0.96824 0.93598 1.17874 0.93645 0.90264 0.92697 0.97342 1.22060 0.96637 1.48433 0.95267 0.93304 1.26931 0.99377 0.92628 1.03347 1.70880 1.06688 1.44047 1.35712 0.83125 0.73911 0.77404 0.73096 1.19596 1.19937 1.21566 1.22539 0.96943 0.96514 0.95135 0.90839 1.23247 0.98366 1.01286 0.95256 1.23518 0.94456 0.91022 0.93504 1.88298 1.78351 1.45065 1.21348 1.22897 0.99824 0.95085 0.82514 1.20962 0.94099 0.97381 1.04464 0.91375 0.91728 0.89493 0.83870 0.84251 0.87379 0.92902 0.89352 0.91975 0.88234 0.90839 0.93503 0.91755 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 10.01 71.24 0.71 -2.06 16 2 C -0.10 -3.33 5.88 -19.86 -0.12 -3.44 16 3 C -0.15 -4.66 9.70 22.27 0.22 -4.45 16 4 C -0.12 -4.08 10.05 22.27 0.22 -3.85 16 5 C -0.13 -5.38 8.83 22.27 0.20 -5.18 16 6 C -0.04 -1.88 4.25 -19.87 -0.08 -1.96 16 7 C 0.07 3.51 1.05 -12.29 -0.01 3.50 16 8 H 0.01 0.45 6.41 -2.39 -0.02 0.44 16 9 C -0.59 -30.98 7.19 25.60 0.18 -30.80 16 10 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 11 C -0.02 -1.31 5.45 84.66 0.46 -0.84 16 12 N -0.94 -56.15 13.62 21.45 0.29 -55.85 16 13 Si 1.10 49.95 29.91 68.60 2.05 52.01 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 C -0.09 -3.71 2.36 -9.53 -0.02 -3.73 16 18 H 0.07 2.88 7.78 -2.38 -0.02 2.86 16 19 C -0.14 -4.82 6.09 32.05 0.20 -4.62 16 20 C 0.05 1.51 7.78 72.65 0.56 2.08 16 21 O -0.41 -15.49 11.36 -148.98 -1.69 -17.18 16 22 C 0.07 2.99 6.86 72.45 0.50 3.49 16 23 C -0.15 -6.27 9.33 22.27 0.21 -6.06 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 26 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 27 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.14 3.72 8.06 -2.92 -0.02 3.70 16 29 H 0.11 4.36 7.79 -2.91 -0.02 4.34 16 30 H 0.26 15.71 6.66 -92.71 -0.62 15.09 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.06 2.20 8.04 -2.38 -0.02 2.18 16 33 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 2.16 7.80 -2.39 -0.02 2.14 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.09 4.06 7.95 -2.91 -0.02 4.04 16 Total: -1.00 -63.05 304.28 5.06 -58.00 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.18 Total: 20.97 kcal Atomic # 6 Polarization: -61.16 SS G_CDS: 3.22 Total: -57.94 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.29 Total: -55.85 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.69 Total: -17.18 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.01 kcal Total: -63.05 5.06 -58.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259864012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.024 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds