Wall clock time and date at job start Mon Mar 30 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00079 * 2 1 4 4 C 1.38749 * 120.05951 * 278.18367 * 3 2 1 5 5 C 1.50699 * 120.02739 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94668 * 180.20913 * 4 3 2 7 7 C 1.50704 * 119.97547 * 179.79381 * 6 4 3 8 8 C 1.38290 * 120.05305 * 359.51348 * 6 4 3 9 9 C 1.38240 * 120.11434 * 0.28045 * 8 6 4 10 10 C 1.38171 * 120.05418 * 359.95272 * 9 8 6 11 11 C 1.50702 * 120.03054 * 180.02562 * 10 9 8 12 12 C 1.50694 * 115.54882 * 114.43542 * 11 10 9 13 13 H 1.08001 * 119.99877 * 144.15875 * 12 11 10 14 14 C 1.37871 * 120.00245 * 324.14793 * 12 11 10 15 15 N 1.31513 * 120.00244 * 4.06032 * 14 12 11 16 16 Si 1.86806 * 120.00285 * 184.05788 * 14 12 11 17 17 H 1.48503 * 109.46851 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47070 * 120.00051 * 16 14 12 19 19 H 1.48497 * 109.47169 * 240.00235 * 16 14 12 20 20 C 1.53004 * 117.49617 * 328.76448 * 11 10 9 21 21 C 1.52999 * 117.49558 * 260.10881 * 11 10 9 22 22 H 1.08997 * 109.47253 * 185.00762 * 1 2 3 23 23 H 1.08991 * 109.47337 * 305.01557 * 1 2 3 24 24 H 1.09005 * 109.46761 * 65.01430 * 1 2 3 25 25 H 1.09006 * 109.47326 * 270.20461 * 5 4 3 26 26 H 1.08996 * 109.47282 * 30.20464 * 5 4 3 27 27 H 1.09003 * 109.47120 * 150.20932 * 5 4 3 28 28 H 1.09001 * 109.46771 * 269.72236 * 7 6 4 29 29 H 1.08996 * 109.47034 * 149.72384 * 7 6 4 30 30 H 1.08997 * 109.46862 * 29.72317 * 7 6 4 31 31 H 1.08002 * 119.94463 * 180.25813 * 8 6 4 32 32 H 1.07998 * 119.97783 * 179.97438 * 9 8 6 33 33 H 0.97000 * 120.00657 * 175.00064 * 15 14 12 34 34 H 1.09000 * 117.49552 * 0.02562 * 20 11 10 35 35 H 1.08995 * 117.49436 * 145.01764 * 20 11 10 36 36 H 1.09007 * 117.49725 * 214.97721 * 21 11 10 37 37 H 1.09000 * 117.50185 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.2092 1.9077 -1.1887 5 6 1.7018 1.3227 -2.4815 6 6 2.8405 3.1362 -1.1866 7 6 3.0222 3.8915 -2.4779 8 6 3.3007 3.6764 0.0004 9 6 3.1355 2.9861 1.1866 10 6 2.5090 1.7546 1.1892 11 6 2.3287 1.0028 2.4828 12 6 0.9028 0.8179 2.9338 13 1 0.6075 -0.0944 3.4307 14 6 -0.0249 1.8136 2.7123 15 7 0.3143 2.8901 2.0374 16 14 -1.7637 1.6334 3.3709 17 1 -1.8889 0.3405 4.0905 18 1 -2.0574 2.7499 4.3050 19 1 -2.7268 1.6669 2.2411 20 6 3.3930 1.1942 3.5653 21 6 3.3183 -0.1231 2.7893 22 1 -0.3633 -1.0237 0.0897 23 1 -0.3633 0.5896 0.8416 24 1 -0.3633 0.4341 -0.9316 25 1 2.4844 0.7166 -2.9380 26 1 0.8302 0.6998 -2.2811 27 1 1.4240 2.1288 -3.1607 28 1 3.9734 3.6124 -2.9312 29 1 3.0163 4.9626 -2.2763 30 1 2.2085 3.6457 -3.1602 31 1 3.7904 4.6390 0.0005 32 1 3.4962 3.4098 2.1122 33 1 -0.3556 3.5568 1.8189 34 1 4.2232 1.8642 3.3419 35 1 3.0617 1.1860 4.6036 36 1 2.9380 -0.9975 3.3175 37 1 4.0994 -0.3204 2.0551 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259876033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:16 Heat of formation + Delta-G solvation = 9.600753 kcal Electronic energy + Delta-G solvation = -18839.156573 eV Core-core repulsion = 16161.600273 eV Total energy + Delta-G solvation = -2677.556300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35083 -36.36941 -36.21301 -32.22325 -31.97719 -30.28219 -27.25953 -26.14623 -25.36018 -24.97182 -21.42808 -21.05552 -20.32231 -18.66615 -16.71857 -16.05892 -15.33207 -14.78223 -14.43726 -14.40218 -13.54089 -13.42965 -13.00520 -12.86685 -12.67951 -12.20430 -12.05301 -11.77298 -11.34129 -11.29329 -11.11587 -10.93671 -10.66000 -10.58619 -10.28441 -10.25683 -10.11127 -9.69795 -9.04155 -8.77894 -8.61067 -8.27198 -7.47634 -7.23045 -5.94519 -4.10614 2.35264 2.49092 3.18871 3.30060 3.32993 4.30284 4.52104 4.96503 5.19796 5.50646 5.59106 5.67230 5.72496 5.86472 5.96142 6.04230 6.12402 6.18839 6.21116 6.33924 6.37870 6.43492 6.45599 6.51480 6.65293 6.73956 6.88186 6.93309 6.95068 7.02302 7.23743 7.33202 7.48176 7.60794 7.77671 7.84751 7.94258 8.37039 8.74916 8.86939 9.44435 10.94784 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.010625 C = 0.009556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.369680 B = 2634.593373 C = 2929.502214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.328 6.328 3 C 0.107 3.893 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.103 4.103 8 C -0.129 4.129 9 C -0.085 4.085 10 C 0.041 3.959 11 C 0.084 3.916 12 C -0.477 4.477 13 H 0.063 0.937 14 C 0.070 3.930 15 N -0.864 5.864 16 Si 0.881 3.119 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.209 4.209 21 C -0.193 4.193 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 0.069 -6.208 6.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.245 6.245 3 C 0.063 3.937 4 C -0.120 4.120 5 C -0.162 4.162 6 C -0.113 4.113 7 C -0.160 4.160 8 C -0.147 4.147 9 C -0.104 4.104 10 C 0.040 3.960 11 C 0.083 3.917 12 C -0.515 4.515 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.500 5.500 16 Si 0.708 3.292 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.247 4.247 21 C -0.230 4.230 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.581 0.113 -6.225 6.740 hybrid contribution -1.229 0.302 0.462 1.347 sum 1.352 0.414 -5.762 5.933 Atomic orbital electron populations 1.22991 0.80424 1.01705 1.00839 1.85856 1.19129 1.25287 1.94222 1.18070 0.97868 0.86644 0.91122 1.19758 1.02393 0.95012 0.94838 1.20696 1.00738 1.00034 0.94736 1.19188 1.02216 0.95036 0.94815 1.20683 1.01050 0.99018 0.95228 1.20676 1.02287 0.99201 0.92515 1.20555 0.99067 0.94224 0.96518 1.19252 0.91702 0.92413 0.92649 1.17661 0.91031 0.94065 0.88902 1.20490 0.91385 1.01798 1.37777 0.91915 1.24970 0.98404 0.95017 0.95009 1.69995 1.33094 1.09352 1.37568 0.86724 0.84823 0.78447 0.79209 1.19507 1.20797 1.20843 1.23107 1.03756 0.99431 0.98407 1.22817 1.03956 0.92621 1.03651 0.91119 0.90284 0.96021 0.92253 0.92023 0.92334 0.92471 0.92590 0.92140 0.87857 0.87336 0.92814 0.91454 0.90322 0.90463 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.29 101.05 1.04 1.77 16 2 O -0.33 -7.61 9.03 -19.41 -0.18 -7.78 16 3 C 0.11 2.49 5.62 -39.22 -0.22 2.27 16 4 C -0.12 -2.48 5.89 -104.48 -0.62 -3.09 16 5 C -0.11 -1.81 9.38 36.01 0.34 -1.47 16 6 C -0.11 -2.18 5.88 -104.64 -0.62 -2.79 16 7 C -0.10 -1.55 9.61 36.01 0.35 -1.20 16 8 C -0.13 -2.59 9.70 -39.56 -0.38 -2.98 16 9 C -0.09 -1.93 8.58 -39.60 -0.34 -2.27 16 10 C 0.04 0.99 3.04 -104.47 -0.32 0.67 16 11 C 0.08 2.07 1.65 -156.81 -0.26 1.81 16 12 C -0.48 -12.48 7.47 -34.45 -0.26 -12.74 16 13 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 14 C 0.07 1.80 3.44 -17.82 -0.06 1.73 16 15 N -0.86 -22.97 10.85 55.43 0.60 -22.37 16 16 Si 0.88 20.21 29.13 -169.99 -4.95 15.26 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.21 -4.70 9.43 -26.69 -0.25 -4.95 16 21 C -0.19 -4.32 9.94 -26.69 -0.27 -4.58 16 22 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.08 1.87 4.35 -51.93 -0.23 1.65 16 24 H 0.02 0.42 6.35 -51.93 -0.33 0.09 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.07 5.44 -51.93 -0.28 0.79 16 27 H 0.06 0.88 5.94 -51.93 -0.31 0.57 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.06 0.84 5.93 -51.93 -0.31 0.54 16 31 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.11 2.41 7.02 -52.49 -0.37 2.04 16 33 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 34 H 0.07 1.42 7.14 -51.93 -0.37 1.05 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -27.62 293.54 -7.08 -34.70 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.12 Total: 3.60 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -1.86 Total: -27.83 kcal Atomic # 7 Polarization: -22.97 SS G_CDS: 0.60 Total: -22.37 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.18 Total: -7.78 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.95 Total: 15.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.62 -7.08 -34.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.302 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds