Wall clock time and date at job start Mon Mar 30 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00079 * 2 1 4 4 C 1.38749 * 120.05951 * 278.18367 * 3 2 1 5 5 C 1.50699 * 120.02739 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94668 * 180.20913 * 4 3 2 7 7 C 1.50704 * 119.97547 * 179.79381 * 6 4 3 8 8 C 1.38290 * 120.05305 * 359.51348 * 6 4 3 9 9 C 1.38240 * 120.11434 * 0.28045 * 8 6 4 10 10 C 1.38171 * 120.05418 * 359.95272 * 9 8 6 11 11 C 1.50702 * 120.03054 * 180.02562 * 10 9 8 12 12 C 1.50694 * 115.54882 * 114.43542 * 11 10 9 13 13 H 1.08001 * 119.99877 * 144.15875 * 12 11 10 14 14 C 1.37871 * 120.00245 * 324.14793 * 12 11 10 15 15 N 1.31513 * 120.00244 * 4.06032 * 14 12 11 16 16 Si 1.86806 * 120.00285 * 184.05788 * 14 12 11 17 17 H 1.48503 * 109.46851 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47070 * 120.00051 * 16 14 12 19 19 H 1.48497 * 109.47169 * 240.00235 * 16 14 12 20 20 C 1.53004 * 117.49617 * 328.76448 * 11 10 9 21 21 C 1.52999 * 117.49558 * 260.10881 * 11 10 9 22 22 H 1.08997 * 109.47253 * 185.00762 * 1 2 3 23 23 H 1.08991 * 109.47337 * 305.01557 * 1 2 3 24 24 H 1.09005 * 109.46761 * 65.01430 * 1 2 3 25 25 H 1.09006 * 109.47326 * 270.20461 * 5 4 3 26 26 H 1.08996 * 109.47282 * 30.20464 * 5 4 3 27 27 H 1.09003 * 109.47120 * 150.20932 * 5 4 3 28 28 H 1.09001 * 109.46771 * 269.72236 * 7 6 4 29 29 H 1.08996 * 109.47034 * 149.72384 * 7 6 4 30 30 H 1.08997 * 109.46862 * 29.72317 * 7 6 4 31 31 H 1.08002 * 119.94463 * 180.25813 * 8 6 4 32 32 H 1.07998 * 119.97783 * 179.97438 * 9 8 6 33 33 H 0.97000 * 120.00657 * 175.00064 * 15 14 12 34 34 H 1.09000 * 117.49552 * 0.02562 * 20 11 10 35 35 H 1.08995 * 117.49436 * 145.01764 * 20 11 10 36 36 H 1.09007 * 117.49725 * 214.97721 * 21 11 10 37 37 H 1.09000 * 117.50185 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.2092 1.9077 -1.1887 5 6 1.7018 1.3227 -2.4815 6 6 2.8405 3.1362 -1.1866 7 6 3.0222 3.8915 -2.4779 8 6 3.3007 3.6764 0.0004 9 6 3.1355 2.9861 1.1866 10 6 2.5090 1.7546 1.1892 11 6 2.3287 1.0028 2.4828 12 6 0.9028 0.8179 2.9338 13 1 0.6075 -0.0944 3.4307 14 6 -0.0249 1.8136 2.7123 15 7 0.3143 2.8901 2.0374 16 14 -1.7637 1.6334 3.3709 17 1 -1.8889 0.3405 4.0905 18 1 -2.0574 2.7499 4.3050 19 1 -2.7268 1.6669 2.2411 20 6 3.3930 1.1942 3.5653 21 6 3.3183 -0.1231 2.7893 22 1 -0.3633 -1.0237 0.0897 23 1 -0.3633 0.5896 0.8416 24 1 -0.3633 0.4341 -0.9316 25 1 2.4844 0.7166 -2.9380 26 1 0.8302 0.6998 -2.2811 27 1 1.4240 2.1288 -3.1607 28 1 3.9734 3.6124 -2.9312 29 1 3.0163 4.9626 -2.2763 30 1 2.2085 3.6457 -3.1602 31 1 3.7904 4.6390 0.0005 32 1 3.4962 3.4098 2.1122 33 1 -0.3556 3.5568 1.8189 34 1 4.2232 1.8642 3.3419 35 1 3.0617 1.1860 4.6036 36 1 2.9380 -0.9975 3.3175 37 1 4.0994 -0.3204 2.0551 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259876033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:15 Heat of formation + Delta-G solvation = -3.737208 kcal Electronic energy + Delta-G solvation = -18839.734950 eV Core-core repulsion = 16161.600273 eV Total energy + Delta-G solvation = -2678.134677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97905 -38.09507 -37.86236 -34.18128 -33.50727 -31.76323 -28.76224 -27.93876 -26.99648 -26.57809 -23.17899 -22.69655 -21.99177 -20.41750 -18.54096 -17.72485 -16.92930 -16.64024 -16.17302 -16.07046 -15.23249 -14.89967 -14.54688 -14.46661 -14.29303 -13.54169 -13.51542 -13.36255 -13.06237 -12.92966 -12.78653 -12.48138 -12.39848 -12.21717 -12.04815 -11.92300 -11.67126 -11.52251 -10.89440 -10.61005 -10.29463 -10.14942 -9.08135 -8.90413 -7.85692 -6.10871 0.72181 0.90018 1.34987 1.41848 1.49442 2.40285 2.89784 3.05242 3.54134 3.73356 4.10387 4.20319 4.30503 4.41267 4.51986 4.54700 4.62162 4.74215 4.75611 4.81787 4.85495 4.93086 4.94770 5.00506 5.11966 5.15314 5.19165 5.22556 5.29971 5.39352 5.52920 5.66517 5.74951 5.93605 5.96054 6.17971 6.31831 6.45898 6.84652 7.10728 7.45647 8.97261 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.010625 C = 0.009556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.369680 B = 2634.593373 C = 2929.502214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C 0.081 3.919 4 C -0.131 4.131 5 C -0.102 4.102 6 C -0.113 4.113 7 C -0.100 4.100 8 C -0.132 4.132 9 C -0.105 4.105 10 C 0.018 3.982 11 C 0.058 3.942 12 C -0.491 4.491 13 H 0.048 0.952 14 C 0.043 3.957 15 N -0.878 5.878 16 Si 0.929 3.071 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.203 4.203 21 C -0.184 4.184 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.257 0.743 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 0.663 -7.932 8.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.037 3.963 4 C -0.131 4.131 5 C -0.158 4.158 6 C -0.113 4.113 7 C -0.156 4.156 8 C -0.150 4.150 9 C -0.124 4.124 10 C 0.017 3.983 11 C 0.058 3.942 12 C -0.528 4.528 13 H 0.066 0.934 14 C -0.159 4.159 15 N -0.514 5.514 16 Si 0.755 3.245 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.240 4.240 21 C -0.221 4.221 22 H 0.110 0.890 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.659 0.698 -7.949 8.411 hybrid contribution -1.217 0.116 0.984 1.569 sum 1.442 0.813 -6.965 7.159 Atomic orbital electron populations 1.23035 0.79842 1.02737 1.00427 1.85819 1.19871 1.25777 1.94335 1.18369 0.98725 0.87150 0.92022 1.20193 1.02108 0.95379 0.95426 1.20734 1.00800 1.00822 0.93472 1.19719 1.00428 0.94693 0.96474 1.20741 1.02596 0.99211 0.93034 1.21014 1.01897 1.00001 0.92073 1.20628 1.00084 0.94316 0.97324 1.19299 0.93221 0.93196 0.92632 1.17807 0.90728 0.95608 0.90102 1.20558 0.92759 1.01427 1.38103 0.93393 1.25385 1.00815 0.94723 0.95006 1.70131 1.33518 1.09623 1.38178 0.85980 0.81815 0.78048 0.78671 1.19477 1.21106 1.20198 1.23073 1.03458 0.99711 0.97796 1.22792 1.03466 0.92394 1.03496 0.88959 0.92962 0.94538 0.90767 0.92690 0.89923 0.90418 0.91213 0.90864 0.85229 0.88160 0.93312 0.90333 0.90655 0.90345 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.41 10.29 113.37 1.17 2.57 16 2 O -0.34 -15.75 9.03 -92.36 -0.83 -16.58 16 3 C 0.08 3.74 5.62 22.51 0.13 3.86 16 4 C -0.13 -5.19 5.89 -19.77 -0.12 -5.30 16 5 C -0.10 -3.21 9.38 71.24 0.67 -2.55 16 6 C -0.11 -4.10 5.88 -19.88 -0.12 -4.21 16 7 C -0.10 -2.57 9.61 71.24 0.68 -1.89 16 8 C -0.13 -5.10 9.70 22.28 0.22 -4.89 16 9 C -0.11 -4.75 8.58 22.25 0.19 -4.56 16 10 C 0.02 0.85 3.04 -19.77 -0.06 0.79 16 11 C 0.06 2.89 1.65 -53.67 -0.09 2.81 16 12 C -0.49 -26.14 7.47 25.60 0.19 -25.95 16 13 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 14 C 0.04 2.22 3.44 84.65 0.29 2.51 16 15 N -0.88 -47.03 10.85 21.44 0.23 -46.80 16 16 Si 0.93 41.75 29.13 68.60 2.00 43.74 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 C -0.20 -9.19 9.43 30.62 0.29 -8.90 16 21 C -0.18 -8.30 9.94 30.62 0.30 -8.00 16 22 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 23 H 0.05 2.48 4.35 -2.39 -0.01 2.46 16 24 H 0.04 1.38 6.35 -2.38 -0.02 1.36 16 25 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.05 1.79 5.44 -2.39 -0.01 1.78 16 27 H 0.08 2.17 5.94 -2.39 -0.01 2.15 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 30 H 0.07 1.72 5.93 -2.39 -0.01 1.70 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.10 4.52 7.02 -2.91 -0.02 4.50 16 33 H 0.26 13.45 8.32 -92.71 -0.77 12.68 16 34 H 0.08 3.33 7.14 -2.39 -0.02 3.31 16 35 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 37 H 0.07 3.23 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -58.91 293.54 6.21 -52.71 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.06 Total: 20.63 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 3.75 Total: -53.70 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.23 Total: -46.80 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.83 Total: -16.58 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.00 Total: 43.74 kcal Total: -58.91 6.21 -52.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.970 kcal (2) G-P(sol) polarization free energy of solvation -58.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds