Wall clock time and date at job start Mon Mar 30 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 116.99923 * 2 1 4 4 C 1.38750 * 120.05580 * 357.73886 * 3 2 1 5 5 C 1.38125 * 119.94622 * 179.72587 * 4 3 2 6 6 C 1.50700 * 119.97412 * 180.02562 * 5 4 3 7 7 C 1.38293 * 120.05316 * 0.02562 * 5 4 3 8 8 C 1.50698 * 119.94312 * 180.02562 * 7 5 4 9 9 C 1.38244 * 120.11152 * 359.97438 * 7 5 4 10 10 C 1.38168 * 120.05713 * 359.97438 * 9 7 5 11 11 C 1.50699 * 120.02836 * 180.02562 * 10 9 7 12 12 C 1.50702 * 115.54844 * 114.43200 * 11 10 9 13 13 H 1.07999 * 119.99315 * 145.48116 * 12 11 10 14 14 C 1.37869 * 120.00005 * 325.48075 * 12 11 10 15 15 N 1.31516 * 120.00206 * 351.05306 * 14 12 11 16 16 Si 1.86807 * 119.99694 * 171.04954 * 14 12 11 17 17 H 1.48502 * 109.47071 * 60.00447 * 16 14 12 18 18 H 1.48503 * 109.46670 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47249 * 300.00094 * 16 14 12 20 20 C 1.53003 * 117.49843 * 328.76273 * 11 10 9 21 21 C 1.52997 * 117.49962 * 260.10377 * 11 10 9 22 22 H 1.09004 * 109.47465 * 304.56645 * 1 2 3 23 23 H 1.08997 * 109.47428 * 64.56742 * 1 2 3 24 24 H 1.09007 * 109.46943 * 184.57046 * 1 2 3 25 25 H 1.07997 * 120.03164 * 359.70655 * 4 3 2 26 26 H 1.09000 * 109.46634 * 90.00197 * 6 5 4 27 27 H 1.08996 * 109.46895 * 210.00108 * 6 5 4 28 28 H 1.08993 * 109.46810 * 330.00145 * 6 5 4 29 29 H 1.08994 * 109.47511 * 90.00094 * 8 7 5 30 30 H 1.09000 * 109.46819 * 210.00088 * 8 7 5 31 31 H 1.09004 * 109.46981 * 329.99765 * 8 7 5 32 32 H 1.08000 * 119.97010 * 180.02562 * 9 7 5 33 33 H 0.97003 * 119.99672 * 185.01498 * 15 14 12 34 34 H 1.09000 * 117.49975 * 0.02562 * 20 11 10 35 35 H 1.09005 * 117.49597 * 145.01730 * 20 11 10 36 36 H 1.09002 * 117.50265 * 214.97896 * 21 11 10 37 37 H 1.09004 * 117.49647 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2922 2.3748 -0.0474 5 6 1.9214 3.6044 -0.0416 6 6 1.1033 4.8691 -0.0924 7 6 3.3015 3.6760 0.0109 8 6 3.9853 5.0188 0.0177 9 6 4.0547 2.5177 0.0582 10 6 3.4300 1.2853 0.0537 11 6 4.2517 0.0232 0.1058 12 6 4.0872 -0.8085 1.3517 13 1 4.1386 -1.8857 1.2925 14 6 3.8709 -0.1943 2.5670 15 7 3.9827 1.1118 2.6728 16 14 3.4192 -1.2174 4.0632 17 1 4.5041 -2.1924 4.3421 18 1 3.2409 -0.3255 5.2371 19 1 2.1532 -1.9474 3.7999 20 6 5.6359 0.0539 -0.5454 21 6 4.4935 -0.7173 -1.2111 22 1 -0.3634 0.5831 0.8463 23 1 -0.3634 0.4413 -0.9280 24 1 -0.3633 -1.0245 0.0819 25 1 0.2144 2.3195 -0.0891 26 1 0.8663 5.1894 0.9221 27 1 1.6727 5.6500 -0.5964 28 1 0.1794 4.6823 -0.6397 29 1 4.1104 5.3577 1.0461 30 1 4.9624 4.9313 -0.4574 31 1 3.3778 5.7388 -0.5307 32 1 5.1323 2.5763 0.0995 33 1 3.9024 1.5366 3.5411 34 1 5.9524 0.9872 -1.0111 35 1 6.4275 -0.5277 -0.0727 36 1 4.5340 -1.8060 -1.1763 37 1 4.0579 -0.2917 -2.1151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259883258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:18 Heat of formation + Delta-G solvation = 6.751164 kcal Electronic energy + Delta-G solvation = -18522.642748 eV Core-core repulsion = 15844.962880 eV Total energy + Delta-G solvation = -2677.679867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42142 -36.98836 -36.13788 -32.00576 -31.46727 -30.92502 -27.26001 -26.62768 -25.57365 -24.60031 -21.64420 -20.94662 -20.24744 -18.77263 -16.93840 -16.09481 -15.27197 -14.86943 -14.50695 -14.11079 -13.62166 -13.53651 -13.30089 -13.20058 -12.76760 -12.31551 -11.86383 -11.69266 -11.39165 -11.31919 -11.12497 -10.94422 -10.86432 -10.51187 -10.47321 -10.23236 -10.11105 -9.80224 -9.27841 -9.06184 -8.70319 -8.16640 -7.56803 -6.82656 -5.85920 -3.93959 2.45540 2.50698 3.34186 3.38914 3.42413 4.27857 4.46118 4.80432 5.10006 5.47103 5.56881 5.63828 5.67032 5.73875 5.75869 5.78880 5.93775 5.98269 6.00913 6.17905 6.23244 6.29686 6.37640 6.46860 6.53560 6.69880 6.73373 6.78315 6.95586 7.04141 7.20414 7.38073 7.44096 7.62936 7.70812 7.90731 7.99359 8.49188 8.53447 8.99126 9.62567 11.10821 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.009931 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.590366 B = 2818.755281 C = 2943.236013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.290 6.290 3 C 0.131 3.869 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.105 4.105 7 C -0.132 4.132 8 C -0.101 4.101 9 C -0.049 4.049 10 C 0.014 3.986 11 C 0.095 3.905 12 C -0.479 4.479 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.866 5.866 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.208 4.208 21 C -0.200 4.200 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 5.116 -5.183 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.203 6.203 3 C 0.086 3.914 4 C -0.236 4.236 5 C -0.084 4.084 6 C -0.162 4.162 7 C -0.132 4.132 8 C -0.158 4.158 9 C -0.067 4.067 10 C 0.013 3.987 11 C 0.094 3.906 12 C -0.516 4.516 13 H 0.077 0.923 14 C -0.129 4.129 15 N -0.502 5.502 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.246 4.246 21 C -0.237 4.237 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.747 5.097 -5.039 8.597 hybrid contribution -0.511 -0.418 1.085 1.270 sum -5.258 4.679 -3.954 8.073 Atomic orbital electron populations 1.22857 0.81330 1.02549 0.99901 1.86288 1.18516 1.26858 1.88605 1.18706 0.91947 0.83302 0.97417 1.20746 0.98369 0.92235 1.12252 1.19093 0.93136 0.93665 1.02512 1.20709 0.98637 0.95575 1.01263 1.19377 0.92773 0.94900 1.06196 1.20656 0.99435 0.94447 1.01244 1.20387 0.98852 0.90363 0.97146 1.18433 0.89438 0.94487 0.96312 1.17547 0.90917 0.91244 0.90876 1.20330 1.49397 0.91940 0.89941 0.92253 1.24923 0.94547 0.94791 0.98620 1.69994 1.48043 1.08318 1.23834 0.86743 0.79270 0.80207 0.82315 1.20352 1.21430 1.20208 1.23083 0.94408 1.00339 1.06785 1.22849 1.05290 0.97879 0.97679 0.93722 0.94091 0.89431 0.87274 0.92186 0.91891 0.92835 0.92269 0.92636 0.92518 0.86828 0.93032 0.91579 0.90333 0.90544 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.82 101.05 0.99 1.49 16 2 O -0.29 -6.62 9.61 -19.42 -0.19 -6.81 16 3 C 0.13 3.07 6.60 -39.22 -0.26 2.81 16 4 C -0.22 -4.46 8.69 -39.43 -0.34 -4.80 16 5 C -0.08 -1.62 5.88 -104.64 -0.62 -2.23 16 6 C -0.11 -1.56 9.60 36.01 0.35 -1.21 16 7 C -0.13 -2.66 5.88 -104.60 -0.62 -3.27 16 8 C -0.10 -1.62 9.60 36.00 0.35 -1.27 16 9 C -0.05 -1.13 8.20 -39.60 -0.32 -1.45 16 10 C 0.01 0.35 3.27 -104.47 -0.34 0.01 16 11 C 0.09 2.41 1.59 -156.81 -0.25 2.16 16 12 C -0.48 -13.31 8.63 -34.44 -0.30 -13.60 16 13 H 0.06 1.66 7.83 -52.49 -0.41 1.24 16 14 C 0.08 2.08 5.27 -17.82 -0.09 1.99 16 15 N -0.87 -24.39 11.15 55.43 0.62 -23.77 16 16 Si 0.89 21.58 29.55 -169.99 -5.02 16.55 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.21 -4.80 9.43 -26.69 -0.25 -5.05 16 21 C -0.20 -4.54 9.94 -26.70 -0.27 -4.80 16 22 H 0.04 0.73 7.50 -51.93 -0.39 0.34 16 23 H 0.04 0.60 7.82 -51.93 -0.41 0.19 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.11 1.95 6.31 -52.49 -0.33 1.62 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.83 5.94 -51.93 -0.31 0.52 16 28 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.06 0.77 5.94 -51.93 -0.31 0.47 16 32 H 0.11 2.57 7.02 -52.49 -0.37 2.20 16 33 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 34 H 0.07 1.42 7.14 -51.93 -0.37 1.04 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -29.90 302.88 -7.41 -37.31 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.40 Total: 1.39 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -1.97 Total: -29.24 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.62 Total: -23.77 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.19 Total: -6.81 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.90 -7.41 -37.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.059 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds