Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 116.99923 * 2 1 4 4 C 1.38750 * 120.05580 * 357.73886 * 3 2 1 5 5 C 1.38125 * 119.94622 * 179.72587 * 4 3 2 6 6 C 1.50700 * 119.97412 * 180.02562 * 5 4 3 7 7 C 1.38293 * 120.05316 * 0.02562 * 5 4 3 8 8 C 1.50698 * 119.94312 * 180.02562 * 7 5 4 9 9 C 1.38244 * 120.11152 * 359.97438 * 7 5 4 10 10 C 1.38168 * 120.05713 * 359.97438 * 9 7 5 11 11 C 1.50699 * 120.02836 * 180.02562 * 10 9 7 12 12 C 1.50702 * 115.54844 * 114.43200 * 11 10 9 13 13 H 1.07999 * 119.99315 * 145.48116 * 12 11 10 14 14 C 1.37869 * 120.00005 * 325.48075 * 12 11 10 15 15 N 1.31516 * 120.00206 * 351.05306 * 14 12 11 16 16 Si 1.86807 * 119.99694 * 171.04954 * 14 12 11 17 17 H 1.48502 * 109.47071 * 60.00447 * 16 14 12 18 18 H 1.48503 * 109.46670 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47249 * 300.00094 * 16 14 12 20 20 C 1.53003 * 117.49843 * 328.76273 * 11 10 9 21 21 C 1.52997 * 117.49962 * 260.10377 * 11 10 9 22 22 H 1.09004 * 109.47465 * 304.56645 * 1 2 3 23 23 H 1.08997 * 109.47428 * 64.56742 * 1 2 3 24 24 H 1.09007 * 109.46943 * 184.57046 * 1 2 3 25 25 H 1.07997 * 120.03164 * 359.70655 * 4 3 2 26 26 H 1.09000 * 109.46634 * 90.00197 * 6 5 4 27 27 H 1.08996 * 109.46895 * 210.00108 * 6 5 4 28 28 H 1.08993 * 109.46810 * 330.00145 * 6 5 4 29 29 H 1.08994 * 109.47511 * 90.00094 * 8 7 5 30 30 H 1.09000 * 109.46819 * 210.00088 * 8 7 5 31 31 H 1.09004 * 109.46981 * 329.99765 * 8 7 5 32 32 H 1.08000 * 119.97010 * 180.02562 * 9 7 5 33 33 H 0.97003 * 119.99672 * 185.01498 * 15 14 12 34 34 H 1.09000 * 117.49975 * 0.02562 * 20 11 10 35 35 H 1.09005 * 117.49597 * 145.01730 * 20 11 10 36 36 H 1.09002 * 117.50265 * 214.97896 * 21 11 10 37 37 H 1.09004 * 117.49647 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2922 2.3748 -0.0474 5 6 1.9214 3.6044 -0.0416 6 6 1.1033 4.8691 -0.0924 7 6 3.3015 3.6760 0.0109 8 6 3.9853 5.0188 0.0177 9 6 4.0547 2.5177 0.0582 10 6 3.4300 1.2853 0.0537 11 6 4.2517 0.0232 0.1058 12 6 4.0872 -0.8085 1.3517 13 1 4.1386 -1.8857 1.2925 14 6 3.8709 -0.1943 2.5670 15 7 3.9827 1.1118 2.6728 16 14 3.4192 -1.2174 4.0632 17 1 4.5041 -2.1924 4.3421 18 1 3.2409 -0.3255 5.2371 19 1 2.1532 -1.9474 3.7999 20 6 5.6359 0.0539 -0.5454 21 6 4.4935 -0.7173 -1.2111 22 1 -0.3634 0.5831 0.8463 23 1 -0.3634 0.4413 -0.9280 24 1 -0.3633 -1.0245 0.0819 25 1 0.2144 2.3195 -0.0891 26 1 0.8663 5.1894 0.9221 27 1 1.6727 5.6500 -0.5964 28 1 0.1794 4.6823 -0.6397 29 1 4.1104 5.3577 1.0461 30 1 4.9624 4.9313 -0.4574 31 1 3.3778 5.7388 -0.5307 32 1 5.1323 2.5763 0.0995 33 1 3.9024 1.5366 3.5411 34 1 5.9524 0.9872 -1.0111 35 1 6.4275 -0.5277 -0.0727 36 1 4.5340 -1.8060 -1.1763 37 1 4.0579 -0.2917 -2.1151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259883258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -8.615163 kcal Electronic energy + Delta-G solvation = -18523.309082 eV Core-core repulsion = 15844.962880 eV Total energy + Delta-G solvation = -2678.346201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01389 -38.57239 -37.87450 -34.07148 -32.98141 -32.37830 -28.66396 -28.05533 -27.53791 -26.09499 -23.34063 -22.67013 -21.89124 -20.55828 -18.70611 -17.78139 -16.84358 -16.61525 -16.27296 -15.84589 -15.25047 -14.95385 -14.80483 -14.65488 -14.43602 -13.53942 -13.46928 -13.24014 -12.96095 -12.86622 -12.73950 -12.65790 -12.44358 -12.34453 -12.07540 -11.99514 -11.78197 -11.30118 -11.10656 -10.97760 -10.57379 -10.12303 -9.21820 -8.46682 -7.87601 -6.05936 0.84620 0.91342 1.38900 1.41148 1.47375 2.44561 2.79926 3.09050 3.19943 3.73212 4.08117 4.15709 4.27100 4.36494 4.45803 4.47672 4.52476 4.59558 4.71450 4.76919 4.83185 4.85447 4.94869 4.97173 5.02791 5.05465 5.16171 5.22076 5.27302 5.34361 5.54789 5.62690 5.75437 5.88710 5.96824 6.10200 6.36623 6.49358 6.85710 7.00325 7.51474 9.01500 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.009931 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.590366 B = 2818.755281 C = 2943.236013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.324 6.324 3 C 0.108 3.892 4 C -0.222 4.222 5 C -0.086 4.086 6 C -0.102 4.102 7 C -0.141 4.141 8 C -0.098 4.098 9 C -0.068 4.068 10 C -0.016 4.016 11 C 0.067 3.933 12 C -0.497 4.497 13 H 0.045 0.955 14 C 0.037 3.963 15 N -0.882 5.882 16 Si 0.938 3.062 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.277 1.277 20 C -0.202 4.202 21 C -0.187 4.187 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.106 0.894 25 H 0.134 0.866 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 6.581 -5.523 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.238 6.238 3 C 0.063 3.937 4 C -0.241 4.241 5 C -0.086 4.086 6 C -0.158 4.158 7 C -0.141 4.141 8 C -0.154 4.154 9 C -0.086 4.086 10 C -0.017 4.017 11 C 0.067 3.933 12 C -0.535 4.535 13 H 0.063 0.937 14 C -0.165 4.165 15 N -0.518 5.518 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.240 4.240 21 C -0.224 4.224 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.125 0.875 25 H 0.152 0.848 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.065 6.556 -5.389 10.431 hybrid contribution -0.136 -0.884 1.146 1.454 sum -6.201 5.672 -4.243 9.414 Atomic orbital electron populations 1.23142 0.78745 1.04207 1.01176 1.86210 1.21389 1.27317 1.88856 1.18939 0.92040 0.84331 0.98367 1.21101 0.99595 0.91912 1.11488 1.19666 0.93380 0.95186 1.00382 1.20770 0.98983 0.93657 1.02368 1.19827 0.93502 0.95766 1.04992 1.20693 0.99994 0.92780 1.01917 1.20449 0.98558 0.91200 0.98410 1.18488 0.90274 0.94391 0.98503 1.17659 0.92357 0.92428 0.90895 1.20529 1.49782 0.91589 0.91574 0.93700 1.25471 0.94614 0.95744 1.00662 1.70134 1.48704 1.09181 1.23764 0.85937 0.78918 0.79043 0.79675 1.19857 1.21066 1.20232 1.23030 0.93677 1.00847 1.06405 1.22822 1.04555 0.97793 0.97231 0.93505 0.91746 0.87545 0.84844 0.91339 0.89829 0.90964 0.92069 0.92007 0.89616 0.88038 0.93545 0.90288 0.90931 0.90493 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 9.82 113.37 1.11 1.84 16 2 O -0.32 -14.81 9.61 -92.42 -0.89 -15.70 16 3 C 0.11 5.04 6.60 22.51 0.15 5.19 16 4 C -0.22 -8.78 8.69 22.37 0.19 -8.58 16 5 C -0.09 -3.12 5.88 -19.88 -0.12 -3.23 16 6 C -0.10 -2.59 9.60 71.24 0.68 -1.91 16 7 C -0.14 -5.45 5.88 -19.85 -0.12 -5.57 16 8 C -0.10 -2.87 9.60 71.24 0.68 -2.19 16 9 C -0.07 -3.12 8.20 22.25 0.18 -2.94 16 10 C -0.02 -0.77 3.27 -19.77 -0.06 -0.84 16 11 C 0.07 3.48 1.59 -53.67 -0.09 3.39 16 12 C -0.50 -28.29 8.63 25.60 0.22 -28.07 16 13 H 0.04 2.58 7.83 -2.91 -0.02 2.56 16 14 C 0.04 2.08 5.27 84.65 0.45 2.53 16 15 N -0.88 -50.35 11.15 21.44 0.24 -50.12 16 16 Si 0.94 44.75 29.55 68.60 2.03 46.77 16 17 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 C -0.20 -9.45 9.43 30.62 0.29 -9.16 16 21 C -0.19 -8.58 9.94 30.62 0.30 -8.27 16 22 H 0.05 1.47 7.50 -2.39 -0.02 1.45 16 23 H 0.06 1.75 7.82 -2.39 -0.02 1.73 16 24 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 25 H 0.13 4.43 6.31 -2.91 -0.02 4.41 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.79 5.94 -2.39 -0.01 1.78 16 28 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 31 H 0.09 2.00 5.94 -2.39 -0.01 1.98 16 32 H 0.10 4.72 7.02 -2.91 -0.02 4.69 16 33 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 34 H 0.08 3.43 7.14 -2.39 -0.02 3.41 16 35 H 0.07 3.41 8.14 -2.38 -0.02 3.39 16 36 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -64.96 302.88 6.31 -58.65 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.05 Total: 18.21 kcal Atomic # 6 Polarization: -61.69 SS G_CDS: 3.88 Total: -57.81 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.24 Total: -50.12 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.89 Total: -15.70 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.96 6.31 -58.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.031 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds