Wall clock time and date at job start Mon Mar 30 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00283 * 2 1 4 4 H 1.09000 * 110.72411 * 330.70018 * 3 2 1 5 5 C 1.54345 * 110.99197 * 94.22270 * 3 2 1 6 6 C 1.51364 * 105.17212 * 91.94923 * 5 3 2 7 7 C 1.38262 * 109.75132 * 17.19473 * 6 5 3 8 8 C 1.38449 * 119.84886 * 179.97438 * 7 6 5 9 9 C 1.50707 * 119.89307 * 180.02562 * 8 7 6 10 10 C 1.38151 * 120.21611 * 0.02562 * 8 7 6 11 11 C 1.38205 * 119.93217 * 359.97438 * 10 8 7 12 12 C 1.38149 * 119.94045 * 359.97438 * 11 10 8 13 13 C 1.50693 * 119.89479 * 180.02562 * 12 11 10 14 14 C 1.51369 * 109.75172 * 359.97438 * 7 6 5 15 15 H 1.09007 * 110.30058 * 101.73704 * 14 7 6 16 16 C 1.50701 * 110.38605 * 223.84307 * 14 7 6 17 17 H 1.08003 * 119.99922 * 30.95977 * 16 14 7 18 18 C 1.37879 * 120.00005 * 210.96237 * 16 14 7 19 19 N 1.31514 * 119.99990 * 5.75987 * 18 16 14 20 20 Si 1.86798 * 119.99920 * 185.76082 * 18 16 14 21 21 H 1.48500 * 109.47106 * 59.99940 * 20 18 16 22 22 H 1.48498 * 109.47021 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47063 * 300.00223 * 20 18 16 24 24 H 1.09004 * 109.47511 * 300.00320 * 1 2 3 25 25 H 1.09006 * 109.47528 * 59.99816 * 1 2 3 26 26 H 1.08998 * 109.47584 * 180.02562 * 1 2 3 27 27 H 1.08999 * 110.29939 * 210.87728 * 5 3 2 28 28 H 1.09003 * 110.29820 * 333.02244 * 5 3 2 29 29 H 1.09002 * 109.46625 * 84.38154 * 9 8 7 30 30 H 1.08994 * 109.47224 * 204.37861 * 9 8 7 31 31 H 1.09000 * 109.47148 * 324.38331 * 9 8 7 32 32 H 1.07998 * 120.03057 * 180.02562 * 10 8 7 33 33 H 1.08005 * 120.03503 * 179.97438 * 11 10 8 34 34 H 1.08994 * 109.47168 * 90.00188 * 13 12 11 35 35 H 1.09012 * 109.46826 * 210.00096 * 13 12 11 36 36 H 1.09000 * 109.47189 * 329.99689 * 13 12 11 37 37 H 0.97001 * 119.99986 * 185.01664 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3550 2.0194 -0.4989 5 6 2.3321 1.7674 1.4371 6 6 3.7625 1.3366 1.6807 7 6 4.3789 1.0595 0.4745 8 6 5.6998 0.6451 0.4548 9 6 6.3728 0.3434 -0.8595 10 6 6.4029 0.5074 1.6360 11 6 5.7868 0.7844 2.8416 12 6 4.4691 1.1990 2.8634 13 6 3.7985 1.5013 4.1785 14 6 3.4043 1.2847 -0.6616 15 1 3.6054 2.2388 -1.1489 16 6 3.4931 0.1595 -1.6603 17 1 3.7552 -0.8352 -1.3311 18 6 3.2399 0.4000 -2.9941 19 7 3.0324 1.6294 -3.4128 20 14 3.1915 -1.0203 -4.2064 21 1 2.1283 -1.9767 -3.8062 22 1 2.9033 -0.5000 -5.5671 23 1 4.5049 -1.7132 -4.2098 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.2450 2.8511 1.5144 28 1 1.6644 1.2819 2.1488 29 1 6.7546 1.2678 -1.2927 30 1 7.1985 -0.3487 -0.6944 31 1 5.6520 -0.1071 -1.5418 32 1 7.4333 0.1844 1.6171 33 1 6.3348 0.6769 3.7661 34 1 3.9434 2.5525 4.4271 35 1 2.7319 1.2903 4.0994 36 1 4.2348 0.8795 4.9603 37 1 2.7826 1.7916 -4.3359 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:15 Heat of formation + Delta-G solvation = -32.606015 kcal Electronic energy + Delta-G solvation = -18420.175814 eV Core-core repulsion = 15740.789291 eV Total energy + Delta-G solvation = -2679.386523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62377 -36.95045 -34.07894 -33.39460 -32.11958 -28.73371 -27.84660 -27.34248 -25.63053 -24.30512 -23.36490 -20.75351 -20.15277 -18.60730 -16.69054 -15.59096 -15.06284 -14.65810 -14.52281 -14.33080 -13.67785 -13.57125 -13.38797 -12.63243 -12.50424 -12.20357 -12.10588 -11.99835 -11.71147 -11.48255 -11.03885 -10.95435 -10.85593 -10.64471 -10.49753 -10.40349 -10.19790 -9.97984 -9.23522 -9.14769 -8.61190 -8.38167 -7.68275 -7.46969 -6.02075 -3.97160 2.12577 2.24785 3.34608 3.39082 3.44230 4.43689 4.53841 4.81626 5.18706 5.30595 5.47281 5.57273 5.66451 5.75978 5.84488 5.91038 5.96655 6.02438 6.14831 6.18708 6.22123 6.23898 6.27610 6.34693 6.49562 6.56757 6.67091 6.80975 7.02980 7.11439 7.20859 7.30788 7.42103 7.51282 7.72746 7.89314 7.93835 8.17851 8.51302 9.02918 9.60054 11.07703 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.009723 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.848920 B = 2878.955143 C = 3763.679706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.349 6.349 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.102 4.102 6 C -0.105 4.105 7 C -0.045 4.045 8 C -0.069 4.069 9 C -0.123 4.123 10 C -0.130 4.130 11 C -0.141 4.141 12 C -0.093 4.093 13 C -0.105 4.105 14 C 0.069 3.931 15 H 0.085 0.915 16 C -0.468 4.468 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.900 5.900 20 Si 0.887 3.113 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.276 1.276 24 H 0.024 0.976 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 0.339 9.136 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.035 3.965 4 H 0.078 0.922 5 C -0.139 4.139 6 C -0.105 4.105 7 C -0.045 4.045 8 C -0.069 4.069 9 C -0.179 4.179 10 C -0.148 4.148 11 C -0.159 4.159 12 C -0.093 4.093 13 C -0.162 4.162 14 C 0.051 3.949 15 H 0.103 0.897 16 C -0.506 4.506 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.539 5.539 20 Si 0.715 3.285 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.202 1.202 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.233 0.278 8.945 8.952 hybrid contribution -0.321 -0.509 -0.552 0.817 sum -0.088 -0.231 8.392 8.396 Atomic orbital electron populations 1.22621 0.84123 1.01180 0.98594 1.88070 1.16593 1.27713 1.94272 1.22932 0.97953 0.83684 0.91915 0.92212 1.21606 0.93145 0.99810 0.99373 1.20371 0.96105 1.01003 0.93016 1.21101 0.93452 0.93652 0.96267 1.19449 0.93452 0.98950 0.95013 1.21015 1.00320 1.00815 0.95799 1.20823 0.99018 1.02706 0.92284 1.20594 0.94358 1.03752 0.97211 1.19240 0.94126 1.02083 0.93878 1.20666 1.00225 1.00876 0.94451 1.18683 0.85749 1.00182 0.90335 0.89698 1.20609 1.45250 0.94342 0.90411 0.92294 1.24921 0.95447 0.95291 0.98120 1.69875 1.48191 1.18737 1.17119 0.86732 0.78783 0.82941 0.80080 1.20207 1.21523 1.20161 0.95793 0.94695 0.91009 0.90907 0.91813 0.92482 0.94063 0.87505 0.87175 0.87316 0.92155 0.92165 0.92504 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.87 101.05 1.10 1.67 16 2 O -0.35 -7.91 9.33 -35.23 -0.33 -8.24 16 3 C 0.09 2.07 3.35 -25.33 -0.08 1.99 16 4 H 0.06 1.31 7.85 -51.93 -0.41 0.91 16 5 C -0.10 -1.95 6.02 -26.85 -0.16 -2.11 16 6 C -0.10 -2.15 6.00 -104.21 -0.63 -2.77 16 7 C -0.04 -1.01 5.53 -104.21 -0.58 -1.59 16 8 C -0.07 -1.45 5.86 -104.57 -0.61 -2.07 16 9 C -0.12 -2.51 9.76 36.01 0.35 -2.16 16 10 C -0.13 -2.40 9.67 -39.63 -0.38 -2.79 16 11 C -0.14 -2.45 9.69 -39.63 -0.38 -2.83 16 12 C -0.09 -1.69 5.88 -104.58 -0.62 -2.30 16 13 C -0.11 -1.49 9.87 36.00 0.36 -1.14 16 14 C 0.07 1.69 2.80 -91.90 -0.26 1.43 16 15 H 0.09 2.29 7.34 -51.93 -0.38 1.90 16 16 C -0.47 -12.41 4.71 -34.44 -0.16 -12.57 16 17 H 0.06 1.63 7.51 -52.48 -0.39 1.23 16 18 C 0.06 1.69 5.45 -17.82 -0.10 1.59 16 19 N -0.90 -25.09 12.82 55.43 0.71 -24.38 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.13 7.59 -51.93 -0.39 0.73 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 31 H 0.11 2.47 5.04 -51.93 -0.26 2.21 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.83 7.29 -51.92 -0.38 0.45 16 36 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 LS Contribution 300.49 15.07 4.53 4.53 Total: -1.00 -28.64 300.49 -7.84 -36.48 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.57 Total: 1.11 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.16 Total: -25.64 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.71 Total: -24.38 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.33 Total: -8.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.64 -7.84 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.871 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds