Wall clock time and date at job start Mon Mar 30 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00283 * 2 1 4 4 H 1.09000 * 110.72411 * 330.70018 * 3 2 1 5 5 C 1.54345 * 110.99197 * 94.22270 * 3 2 1 6 6 C 1.51364 * 105.17212 * 91.94923 * 5 3 2 7 7 C 1.38262 * 109.75132 * 17.19473 * 6 5 3 8 8 C 1.38449 * 119.84886 * 179.97438 * 7 6 5 9 9 C 1.50707 * 119.89307 * 180.02562 * 8 7 6 10 10 C 1.38151 * 120.21611 * 0.02562 * 8 7 6 11 11 C 1.38205 * 119.93217 * 359.97438 * 10 8 7 12 12 C 1.38149 * 119.94045 * 359.97438 * 11 10 8 13 13 C 1.50693 * 119.89479 * 180.02562 * 12 11 10 14 14 C 1.51369 * 109.75172 * 359.97438 * 7 6 5 15 15 H 1.09007 * 110.30058 * 101.73704 * 14 7 6 16 16 C 1.50701 * 110.38605 * 223.84307 * 14 7 6 17 17 H 1.08003 * 119.99922 * 30.95977 * 16 14 7 18 18 C 1.37879 * 120.00005 * 210.96237 * 16 14 7 19 19 N 1.31514 * 119.99990 * 5.75987 * 18 16 14 20 20 Si 1.86798 * 119.99920 * 185.76082 * 18 16 14 21 21 H 1.48500 * 109.47106 * 59.99940 * 20 18 16 22 22 H 1.48498 * 109.47021 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47063 * 300.00223 * 20 18 16 24 24 H 1.09004 * 109.47511 * 300.00320 * 1 2 3 25 25 H 1.09006 * 109.47528 * 59.99816 * 1 2 3 26 26 H 1.08998 * 109.47584 * 180.02562 * 1 2 3 27 27 H 1.08999 * 110.29939 * 210.87728 * 5 3 2 28 28 H 1.09003 * 110.29820 * 333.02244 * 5 3 2 29 29 H 1.09002 * 109.46625 * 84.38154 * 9 8 7 30 30 H 1.08994 * 109.47224 * 204.37861 * 9 8 7 31 31 H 1.09000 * 109.47148 * 324.38331 * 9 8 7 32 32 H 1.07998 * 120.03057 * 180.02562 * 10 8 7 33 33 H 1.08005 * 120.03503 * 179.97438 * 11 10 8 34 34 H 1.08994 * 109.47168 * 90.00188 * 13 12 11 35 35 H 1.09012 * 109.46826 * 210.00096 * 13 12 11 36 36 H 1.09000 * 109.47189 * 329.99689 * 13 12 11 37 37 H 0.97001 * 119.99986 * 185.01664 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3550 2.0194 -0.4989 5 6 2.3321 1.7674 1.4371 6 6 3.7625 1.3366 1.6807 7 6 4.3789 1.0595 0.4745 8 6 5.6998 0.6451 0.4548 9 6 6.3728 0.3434 -0.8595 10 6 6.4029 0.5074 1.6360 11 6 5.7868 0.7844 2.8416 12 6 4.4691 1.1990 2.8634 13 6 3.7985 1.5013 4.1785 14 6 3.4043 1.2847 -0.6616 15 1 3.6054 2.2388 -1.1489 16 6 3.4931 0.1595 -1.6603 17 1 3.7552 -0.8352 -1.3311 18 6 3.2399 0.4000 -2.9941 19 7 3.0324 1.6294 -3.4128 20 14 3.1915 -1.0203 -4.2064 21 1 2.1283 -1.9767 -3.8062 22 1 2.9033 -0.5000 -5.5671 23 1 4.5049 -1.7132 -4.2098 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.2450 2.8511 1.5144 28 1 1.6644 1.2819 2.1488 29 1 6.7546 1.2678 -1.2927 30 1 7.1985 -0.3487 -0.6944 31 1 5.6520 -0.1071 -1.5418 32 1 7.4333 0.1844 1.6171 33 1 6.3348 0.6769 3.7661 34 1 3.9434 2.5525 4.4271 35 1 2.7319 1.2903 4.0994 36 1 4.2348 0.8795 4.9603 37 1 2.7826 1.7916 -4.3359 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:15 Heat of formation + Delta-G solvation = -47.600702 kcal Electronic energy + Delta-G solvation = -18420.826032 eV Core-core repulsion = 15740.789291 eV Total energy + Delta-G solvation = -2680.036741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17462 -38.55061 -35.77623 -34.90850 -33.96493 -30.11243 -29.60745 -28.92352 -27.15179 -25.93657 -25.01903 -22.35626 -21.68902 -20.23092 -18.62030 -17.21301 -16.82921 -16.38502 -16.04891 -15.89664 -15.18692 -15.00051 -14.91535 -14.19080 -14.05828 -13.81507 -13.52626 -13.40572 -13.35375 -13.04519 -12.86321 -12.47320 -12.41579 -12.39658 -12.22030 -11.94223 -11.87973 -11.49726 -11.09579 -10.98396 -10.54406 -10.15730 -9.19406 -9.00585 -8.07957 -6.07091 0.65064 0.74833 1.40839 1.41855 1.49801 2.46547 3.01828 3.19354 3.22831 3.78595 3.99851 4.21222 4.24555 4.33409 4.51090 4.56708 4.59797 4.64668 4.71231 4.80285 4.84633 4.87612 4.92677 4.95996 4.99705 5.04394 5.17270 5.32307 5.37812 5.45660 5.54384 5.72439 5.76153 5.79730 5.93942 6.11897 6.30217 6.44611 6.75237 6.93729 7.50993 9.01047 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.009723 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.848920 B = 2878.955143 C = 3763.679706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.381 6.381 3 C 0.095 3.905 4 H 0.049 0.951 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.083 4.083 8 C -0.097 4.097 9 C -0.117 4.117 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.095 4.095 13 C -0.103 4.103 14 C 0.063 3.937 15 H 0.046 0.954 16 C -0.459 4.459 17 H 0.040 0.960 18 C 0.017 3.983 19 N -0.931 5.931 20 Si 0.937 3.063 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.270 1.270 24 H 0.052 0.948 25 H 0.027 0.973 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -0.289 11.903 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.299 6.299 3 C 0.037 3.963 4 H 0.067 0.933 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.084 4.084 8 C -0.097 4.097 9 C -0.173 4.173 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.095 4.095 13 C -0.159 4.159 14 C 0.044 3.956 15 H 0.064 0.936 16 C -0.497 4.497 17 H 0.059 0.941 18 C -0.180 4.180 19 N -0.572 5.572 20 Si 0.764 3.236 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.635 -0.359 11.719 11.742 hybrid contribution -0.409 -0.326 -1.321 1.421 sum 0.226 -0.685 10.398 10.423 Atomic orbital electron populations 1.22827 0.81722 1.02773 0.99607 1.87993 1.19330 1.27973 1.94614 1.22762 0.96177 0.83543 0.93846 0.93334 1.21482 0.93019 1.00827 0.97314 1.20612 0.96592 1.01495 0.93277 1.21065 0.94336 0.96554 0.96396 1.19683 0.93468 1.00276 0.96231 1.20884 1.00236 1.00921 0.95302 1.21148 1.00185 1.01756 0.91633 1.21092 0.94244 1.01648 0.98264 1.19730 0.94525 1.00512 0.94705 1.20727 1.00147 1.02416 0.92639 1.18549 0.88448 0.97518 0.91061 0.93600 1.20640 1.44000 0.94001 0.91101 0.94143 1.25508 0.95812 0.97141 0.99551 1.69988 1.49871 1.20139 1.17211 0.85921 0.78794 0.80513 0.78383 1.20251 1.21107 1.19561 0.92969 0.95424 0.89163 0.89304 0.89925 0.92977 0.91305 0.90912 0.84358 0.83379 0.90449 0.91901 0.90177 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.87 113.37 1.23 2.18 16 2 O -0.38 -17.40 9.33 -148.98 -1.39 -18.79 16 3 C 0.10 4.30 3.35 31.50 0.11 4.41 16 4 H 0.05 2.22 7.85 -2.39 -0.02 2.21 16 5 C -0.09 -3.31 6.02 30.52 0.18 -3.13 16 6 C -0.12 -4.77 6.00 -19.60 -0.12 -4.88 16 7 C -0.08 -3.85 5.53 -19.60 -0.11 -3.95 16 8 C -0.10 -4.08 5.86 -19.83 -0.12 -4.20 16 9 C -0.12 -4.87 9.76 71.24 0.70 -4.17 16 10 C -0.13 -4.44 9.67 22.24 0.22 -4.23 16 11 C -0.13 -4.14 9.69 22.24 0.22 -3.93 16 12 C -0.09 -3.12 5.88 -19.84 -0.12 -3.23 16 13 C -0.10 -2.44 9.87 71.23 0.70 -1.73 16 14 C 0.06 3.22 2.80 -11.62 -0.03 3.19 16 15 H 0.05 2.66 7.34 -2.38 -0.02 2.64 16 16 C -0.46 -25.46 4.71 25.60 0.12 -25.34 16 17 H 0.04 2.34 7.51 -2.91 -0.02 2.32 16 18 C 0.02 0.94 5.45 84.66 0.46 1.40 16 19 N -0.93 -54.34 12.82 21.45 0.27 -54.06 16 20 Si 0.94 44.73 29.54 68.60 2.03 46.75 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 0.98 8.11 -2.38 -0.02 0.96 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.08 2.72 7.59 -2.39 -0.02 2.70 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 31 H 0.07 3.52 5.04 -2.39 -0.01 3.51 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.47 7.29 -2.38 -0.02 1.45 16 36 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 37 H 0.26 14.55 8.32 -92.71 -0.77 13.78 16 Total: -1.00 -64.44 300.49 5.39 -59.05 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.04 Total: 14.67 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.44 Total: -47.62 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.27 Total: -54.06 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.39 Total: -18.79 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.44 5.39 -59.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.448 kcal (2) G-P(sol) polarization free energy of solvation -64.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds