Wall clock time and date at job start Mon Mar 30 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99849 * 2 1 4 4 H 1.09000 * 110.72693 * 31.95225 * 3 2 1 5 5 C 1.54341 * 110.82188 * 268.54718 * 3 2 1 6 6 C 1.51366 * 105.17323 * 215.41807 * 5 3 2 7 7 C 1.38266 * 109.75051 * 17.19295 * 6 5 3 8 8 C 1.38458 * 119.84535 * 179.97438 * 7 6 5 9 9 C 1.50703 * 119.88813 * 180.02562 * 8 7 6 10 10 C 1.38147 * 120.21633 * 0.02562 * 8 7 6 11 11 C 1.38202 * 119.93913 * 359.97438 * 10 8 7 12 12 C 1.38155 * 119.93088 * 0.27904 * 11 10 8 13 13 C 1.50703 * 119.89024 * 179.72143 * 12 11 10 14 14 C 1.51361 * 109.75308 * 359.97438 * 7 6 5 15 15 H 1.08999 * 110.30310 * 223.88914 * 14 7 6 16 16 C 1.50693 * 110.30513 * 101.73050 * 14 7 6 17 17 H 1.08004 * 120.00327 * 324.67490 * 16 14 7 18 18 C 1.37884 * 119.99735 * 144.66865 * 16 14 7 19 19 N 1.31506 * 120.00181 * 5.07029 * 18 16 14 20 20 Si 1.86807 * 119.99900 * 185.06758 * 18 16 14 21 21 H 1.48498 * 109.46806 * 60.00183 * 20 18 16 22 22 H 1.48491 * 109.47138 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46891 * 300.00433 * 20 18 16 24 24 H 1.08994 * 109.46925 * 299.99561 * 1 2 3 25 25 H 1.08998 * 109.46981 * 60.00106 * 1 2 3 26 26 H 1.09006 * 109.46723 * 180.02562 * 1 2 3 27 27 H 1.09004 * 110.30231 * 96.49879 * 5 3 2 28 28 H 1.08992 * 110.38574 * 334.38634 * 5 3 2 29 29 H 1.09004 * 109.47128 * 267.26580 * 9 8 7 30 30 H 1.09000 * 109.47392 * 27.25994 * 9 8 7 31 31 H 1.09001 * 109.46990 * 147.26210 * 9 8 7 32 32 H 1.07998 * 120.02802 * 179.97438 * 10 8 7 33 33 H 1.07998 * 120.03720 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46992 * 90.00207 * 13 12 11 35 35 H 1.09000 * 109.46824 * 210.00339 * 13 12 11 36 36 H 1.09006 * 109.47241 * 329.99589 * 13 12 11 37 37 H 0.97006 * 120.00426 * 174.95514 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3769 2.0097 0.5395 5 6 2.2668 1.7918 -1.4421 6 6 3.5486 2.5933 -1.3678 7 6 4.2191 2.2948 -0.1960 8 6 5.4250 2.9144 0.0849 9 6 6.1569 2.5893 1.3616 10 6 5.9594 3.8297 -0.8012 11 6 5.2893 4.1281 -1.9724 12 6 4.0833 3.5148 -2.2521 13 6 3.3503 3.8455 -3.5266 14 6 3.4331 1.2728 0.5970 15 1 3.4079 1.5498 1.6509 16 6 4.0381 -0.0971 0.4294 17 1 4.4730 -0.3834 -0.5169 18 6 4.0367 -0.9850 1.4843 19 7 3.4203 -0.6752 2.6038 20 14 4.9104 -2.6283 1.3230 21 1 6.3518 -2.3978 1.0500 22 1 4.7617 -3.3940 2.5865 23 1 4.3117 -3.3995 0.2040 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.4451 2.4231 -1.7802 28 1 2.3906 0.9418 -2.1131 29 1 5.8682 3.2992 2.1368 30 1 5.9002 1.5791 1.6804 31 1 7.2315 2.6546 1.1910 32 1 6.9000 4.3115 -0.5788 33 1 5.7054 4.8436 -2.6661 34 1 3.6712 3.1669 -4.3169 35 1 2.2775 3.7365 -3.3674 36 1 3.5719 4.8725 -3.8172 37 1 3.3563 -1.3275 3.3189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:16 Heat of formation + Delta-G solvation = -47.614067 kcal Electronic energy + Delta-G solvation = -18346.326524 eV Core-core repulsion = 15666.289203 eV Total energy + Delta-G solvation = -2680.037321 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16847 -38.55883 -35.79619 -34.86719 -33.98426 -30.12678 -29.47911 -28.91741 -27.03069 -25.94673 -25.24735 -22.29980 -21.70074 -20.22436 -18.51596 -17.15094 -16.98778 -16.42671 -16.05889 -15.88942 -15.26293 -14.87433 -14.77094 -14.20180 -13.99920 -13.95797 -13.54321 -13.48314 -13.38513 -12.90218 -12.85799 -12.61990 -12.54023 -12.28828 -12.16100 -12.10068 -11.83447 -11.52620 -11.14362 -10.98477 -10.51888 -10.06590 -9.20258 -9.05786 -8.01473 -6.06738 0.61169 0.72045 1.40747 1.41963 1.48888 2.47937 2.99326 3.20888 3.32635 3.76739 4.05840 4.19573 4.21480 4.26113 4.48609 4.54148 4.57064 4.64026 4.69587 4.73922 4.82616 4.87987 4.88902 4.94209 4.96119 5.07029 5.17021 5.27913 5.30851 5.37773 5.54501 5.67418 5.73567 5.84427 5.89530 6.12064 6.25046 6.40171 6.77915 7.01838 7.55150 9.06080 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.009895 C = 0.007521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.265770 B = 2828.914932 C = 3722.014270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.369 6.369 3 C 0.092 3.908 4 H 0.045 0.955 5 C -0.081 4.081 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.104 4.104 9 C -0.105 4.105 10 C -0.123 4.123 11 C -0.134 4.134 12 C -0.092 4.092 13 C -0.104 4.104 14 C 0.072 3.928 15 H 0.030 0.970 16 C -0.478 4.478 17 H 0.033 0.967 18 C 0.033 3.967 19 N -0.917 5.917 20 Si 0.938 3.062 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.277 1.277 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 8.933 -8.463 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.034 3.966 4 H 0.063 0.937 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.082 4.082 8 C -0.104 4.104 9 C -0.162 4.162 10 C -0.140 4.140 11 C -0.152 4.152 12 C -0.092 4.092 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.048 0.952 16 C -0.516 4.516 17 H 0.051 0.949 18 C -0.166 4.166 19 N -0.556 5.556 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.203 1.203 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.391 8.706 -8.252 12.002 hybrid contribution 0.041 -1.108 0.470 1.204 sum -0.350 7.599 -7.782 10.882 Atomic orbital electron populations 1.22837 0.82350 1.02532 0.99582 1.88220 1.18601 1.27262 1.94576 1.22703 0.96002 0.83323 0.94580 0.93726 1.21314 0.94644 0.97993 0.97839 1.20504 0.97727 0.98273 0.95583 1.21034 0.95078 0.95181 0.96872 1.19685 0.94740 0.97865 0.98084 1.20651 0.99587 1.01370 0.94585 1.21130 1.00693 0.97895 0.94308 1.21108 0.94758 1.01563 0.97759 1.19750 0.96126 0.96321 0.96959 1.20744 0.99592 1.02570 0.93185 1.18343 0.89545 0.92500 0.94276 0.95168 1.20540 1.36684 0.98119 0.96243 0.94868 1.25424 0.95643 1.00699 0.94851 1.69985 1.44039 1.35421 1.06164 0.85925 0.79387 0.81031 0.77159 1.19878 1.20875 1.20286 0.95032 0.93138 0.89745 0.89951 0.91231 0.91591 0.93651 0.90453 0.83906 0.83159 0.90999 0.91716 0.89737 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.86 10.88 113.37 1.23 2.09 16 2 O -0.37 -17.71 9.29 -148.98 -1.38 -19.09 16 3 C 0.09 4.25 3.35 31.50 0.11 4.36 16 4 H 0.04 1.97 7.88 -2.39 -0.02 1.95 16 5 C -0.08 -3.16 6.01 30.51 0.18 -2.97 16 6 C -0.12 -4.82 6.00 -19.59 -0.12 -4.94 16 7 C -0.08 -3.71 5.30 -19.59 -0.10 -3.81 16 8 C -0.10 -4.20 5.88 -19.83 -0.12 -4.32 16 9 C -0.11 -4.09 9.89 71.24 0.70 -3.38 16 10 C -0.12 -3.98 9.70 22.24 0.22 -3.76 16 11 C -0.13 -3.96 9.69 22.24 0.22 -3.74 16 12 C -0.09 -2.97 5.88 -19.83 -0.12 -3.08 16 13 C -0.10 -2.47 9.87 71.24 0.70 -1.76 16 14 C 0.07 3.75 2.25 -11.63 -0.03 3.73 16 15 H 0.03 1.77 7.37 -2.39 -0.02 1.75 16 16 C -0.48 -27.20 6.97 25.60 0.18 -27.02 16 17 H 0.03 1.96 7.82 -2.91 -0.02 1.93 16 18 C 0.03 1.88 5.45 84.66 0.46 2.34 16 19 N -0.92 -54.49 12.83 21.45 0.28 -54.21 16 20 Si 0.94 45.68 29.54 68.60 2.03 47.71 16 21 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H 0.03 1.10 8.11 -2.39 -0.02 1.08 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 27 H 0.08 2.66 7.61 -2.38 -0.02 2.64 16 28 H 0.07 2.85 8.10 -2.39 -0.02 2.83 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 2.12 7.25 -2.39 -0.02 2.10 16 31 H 0.08 2.49 8.10 -2.39 -0.02 2.48 16 32 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.48 7.29 -2.39 -0.02 1.47 16 36 H 0.08 1.55 8.08 -2.38 -0.02 1.53 16 37 H 0.26 14.73 8.32 -92.70 -0.77 13.96 16 Total: -1.00 -66.27 304.74 5.47 -60.80 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.04 Total: 11.07 kcal Atomic # 6 Polarization: -49.79 SS G_CDS: 3.52 Total: -46.27 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.28 Total: -54.21 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.38 Total: -19.09 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -66.27 5.47 -60.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.182 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds