Wall clock time and date at job start Mon Mar 30 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00052 * 2 1 4 4 H 1.09002 * 110.88347 * 32.05594 * 3 2 1 5 5 C 1.54351 * 110.81821 * 268.54430 * 3 2 1 6 6 C 1.51365 * 105.17447 * 268.11923 * 5 3 2 7 7 C 1.38266 * 109.75148 * 342.82587 * 6 5 3 8 8 C 1.38451 * 119.85024 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.88921 * 180.02562 * 8 7 6 10 10 C 1.38148 * 120.21863 * 0.02562 * 8 7 6 11 11 C 1.38216 * 119.93077 * 359.97438 * 10 8 7 12 12 C 1.38145 * 119.93496 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.89143 * 180.02562 * 12 11 10 14 14 C 1.51369 * 109.75437 * 359.97438 * 7 6 5 15 15 H 1.08996 * 110.30181 * 136.12057 * 14 7 6 16 16 C 1.50700 * 110.30298 * 258.27624 * 14 7 6 17 17 H 1.07994 * 120.00020 * 30.78509 * 16 14 7 18 18 C 1.37877 * 119.99909 * 210.78532 * 16 14 7 19 19 N 1.31512 * 119.99774 * 5.11644 * 18 16 14 20 20 Si 1.86795 * 120.00237 * 185.11835 * 18 16 14 21 21 H 1.48504 * 109.46856 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47234 * 119.99817 * 20 18 16 23 23 H 1.48500 * 109.47379 * 240.00305 * 20 18 16 24 24 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47087 * 300.00205 * 1 2 3 26 26 H 1.09001 * 109.47140 * 60.00117 * 1 2 3 27 27 H 1.09000 * 110.30486 * 27.04692 * 5 3 2 28 28 H 1.09004 * 110.29694 * 149.20087 * 5 3 2 29 29 H 1.09001 * 109.47203 * 84.77988 * 9 8 7 30 30 H 1.09001 * 109.47141 * 204.77888 * 9 8 7 31 31 H 1.09007 * 109.47593 * 324.77636 * 9 8 7 32 32 H 1.07997 * 120.03386 * 179.97438 * 10 8 7 33 33 H 1.07998 * 120.03023 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47105 * 270.01296 * 13 12 11 35 35 H 1.09005 * 109.47141 * 30.01178 * 13 12 11 36 36 H 1.08992 * 109.47614 * 150.00971 * 13 12 11 37 37 H 0.97007 * 119.99782 * 174.99730 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3798 2.0114 0.5405 5 6 2.2669 1.7916 -1.4423 6 6 3.6840 1.3639 -1.7584 7 6 4.3543 1.0652 -0.5865 8 6 5.6740 0.6494 -0.6343 9 6 6.4053 0.3231 0.6423 10 6 6.3227 0.5327 -1.8484 11 6 5.6526 0.8313 -3.0198 12 6 4.3355 1.2453 -2.9743 13 6 3.6056 1.5700 -4.2521 14 6 3.4334 1.2725 0.5968 15 1 3.5293 0.4454 1.3001 16 6 3.7449 2.5796 1.2791 17 1 4.1248 3.4115 0.7047 18 6 3.5449 2.7133 2.6367 19 7 3.1788 1.6730 3.3530 20 14 3.7940 4.3721 3.4586 21 1 4.2029 5.3727 2.4402 22 1 2.5244 4.8044 4.0960 23 1 4.8535 4.2581 4.4929 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.5666 1.3190 -2.1310 28 1 2.1783 2.8767 -1.4969 29 1 6.1957 -0.7078 0.9277 30 1 7.4773 0.4468 0.4888 31 1 6.0718 0.9942 1.4339 32 1 7.3523 0.2085 -1.8822 33 1 6.1581 0.7402 -3.9699 34 1 3.7395 2.6255 -4.4888 35 1 4.0057 0.9621 -5.0636 36 1 2.5439 1.3573 -4.1283 37 1 3.1084 1.7487 4.3176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:18 Heat of formation + Delta-G solvation = -39.499205 kcal Electronic energy + Delta-G solvation = -18294.962065 eV Core-core repulsion = 15615.276631 eV Total energy + Delta-G solvation = -2679.685434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62010 -37.03445 -34.23721 -33.34446 -32.18017 -28.74956 -27.77576 -27.32328 -25.92031 -24.17243 -23.56077 -20.77249 -20.15435 -18.60493 -16.54795 -15.64182 -15.37916 -14.72284 -14.52793 -14.44104 -13.73792 -13.62605 -13.35544 -12.68985 -12.53216 -12.18559 -12.11673 -12.09173 -11.95911 -11.26859 -11.09895 -11.05293 -10.92318 -10.74630 -10.54804 -10.45586 -10.08971 -9.84612 -9.51208 -9.19464 -8.86893 -8.45140 -7.66489 -7.50390 -6.11079 -4.18520 2.12654 2.26658 3.22836 3.32034 3.36751 4.30907 4.52047 4.71247 5.18834 5.30476 5.46357 5.58173 5.66094 5.75104 5.83104 5.93230 5.94632 5.99119 6.13285 6.15046 6.16660 6.21094 6.25984 6.43630 6.46773 6.51898 6.62323 6.80354 6.95311 7.09945 7.19687 7.24289 7.42695 7.53476 7.77433 7.80566 7.87570 8.11874 8.37634 8.92665 9.45489 10.94671 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.009642 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.099007 B = 2903.379364 C = 3631.976522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.088 3.912 4 H 0.071 0.929 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.039 4.039 8 C -0.081 4.081 9 C -0.110 4.110 10 C -0.127 4.127 11 C -0.143 4.143 12 C -0.092 4.092 13 C -0.106 4.106 14 C 0.078 3.922 15 H 0.078 0.922 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.891 3.109 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -1.268 -8.680 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.031 3.969 4 H 0.089 0.911 5 C -0.131 4.131 6 C -0.100 4.100 7 C -0.039 4.039 8 C -0.081 4.081 9 C -0.166 4.166 10 C -0.145 4.145 11 C -0.161 4.161 12 C -0.092 4.092 13 C -0.162 4.162 14 C 0.060 3.940 15 H 0.096 0.904 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.198 -1.472 -8.490 8.619 hybrid contribution -0.038 1.128 0.377 1.190 sum -0.236 -0.343 -8.112 8.123 Atomic orbital electron populations 1.22610 0.83371 1.01210 0.99082 1.87936 1.17765 1.29646 1.94660 1.23447 0.97817 0.82689 0.92977 0.91111 1.21497 0.92889 1.00283 0.98419 1.20367 0.96362 1.00595 0.92683 1.21091 0.93388 0.92662 0.96780 1.19411 0.93701 1.00225 0.94733 1.20717 0.97855 1.01905 0.96152 1.20768 0.99064 1.02511 0.92187 1.20580 0.94156 1.03917 0.97441 1.19264 0.94245 1.01847 0.93801 1.20670 0.99877 1.00925 0.94774 1.18486 0.85448 0.99432 0.90634 0.90382 1.20838 1.44009 0.96515 0.92708 0.92313 1.25026 0.94330 0.96683 0.97477 1.69961 1.46358 1.29194 1.06225 0.86540 0.77867 0.84209 0.79520 1.19555 1.20864 1.20814 0.90962 0.94469 0.95324 0.92203 0.90511 0.92286 0.93315 0.89652 0.87146 0.87279 0.92079 0.92508 0.92158 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.89 101.05 1.10 1.69 16 2 O -0.38 -8.47 10.45 -35.23 -0.37 -8.83 16 3 C 0.09 2.01 3.03 -25.31 -0.08 1.94 16 4 H 0.07 1.66 7.64 -51.93 -0.40 1.27 16 5 C -0.09 -1.88 6.00 -26.85 -0.16 -2.04 16 6 C -0.10 -2.11 6.00 -104.21 -0.63 -2.74 16 7 C -0.04 -0.90 5.30 -104.20 -0.55 -1.45 16 8 C -0.08 -1.70 5.88 -104.58 -0.62 -2.32 16 9 C -0.11 -2.15 9.83 36.00 0.35 -1.80 16 10 C -0.13 -2.34 9.67 -39.62 -0.38 -2.72 16 11 C -0.14 -2.50 9.69 -39.62 -0.38 -2.89 16 12 C -0.09 -1.69 5.88 -104.58 -0.62 -2.31 16 13 C -0.11 -1.54 9.87 36.01 0.36 -1.18 16 14 C 0.08 1.97 2.15 -91.89 -0.20 1.78 16 15 H 0.08 2.22 7.32 -51.93 -0.38 1.84 16 16 C -0.50 -13.34 7.91 -34.44 -0.27 -13.61 16 17 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 18 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 19 N -0.88 -24.53 12.82 55.43 0.71 -23.82 16 20 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.09 7.59 -51.93 -0.39 0.69 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.08 1.90 7.51 -51.92 -0.39 1.51 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.06 0.85 7.29 -51.93 -0.38 0.47 16 37 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -28.74 306.25 -7.94 -36.68 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.70 Total: 1.70 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.17 Total: -25.92 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.71 Total: -23.82 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.37 Total: -8.83 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.74 -7.94 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.822 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds