Wall clock time and date at job start Mon Mar 30 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00052 * 2 1 4 4 H 1.09002 * 110.88347 * 32.05594 * 3 2 1 5 5 C 1.54351 * 110.81821 * 268.54430 * 3 2 1 6 6 C 1.51365 * 105.17447 * 268.11923 * 5 3 2 7 7 C 1.38266 * 109.75148 * 342.82587 * 6 5 3 8 8 C 1.38451 * 119.85024 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.88921 * 180.02562 * 8 7 6 10 10 C 1.38148 * 120.21863 * 0.02562 * 8 7 6 11 11 C 1.38216 * 119.93077 * 359.97438 * 10 8 7 12 12 C 1.38145 * 119.93496 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.89143 * 180.02562 * 12 11 10 14 14 C 1.51369 * 109.75437 * 359.97438 * 7 6 5 15 15 H 1.08996 * 110.30181 * 136.12057 * 14 7 6 16 16 C 1.50700 * 110.30298 * 258.27624 * 14 7 6 17 17 H 1.07994 * 120.00020 * 30.78509 * 16 14 7 18 18 C 1.37877 * 119.99909 * 210.78532 * 16 14 7 19 19 N 1.31512 * 119.99774 * 5.11644 * 18 16 14 20 20 Si 1.86795 * 120.00237 * 185.11835 * 18 16 14 21 21 H 1.48504 * 109.46856 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47234 * 119.99817 * 20 18 16 23 23 H 1.48500 * 109.47379 * 240.00305 * 20 18 16 24 24 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47087 * 300.00205 * 1 2 3 26 26 H 1.09001 * 109.47140 * 60.00117 * 1 2 3 27 27 H 1.09000 * 110.30486 * 27.04692 * 5 3 2 28 28 H 1.09004 * 110.29694 * 149.20087 * 5 3 2 29 29 H 1.09001 * 109.47203 * 84.77988 * 9 8 7 30 30 H 1.09001 * 109.47141 * 204.77888 * 9 8 7 31 31 H 1.09007 * 109.47593 * 324.77636 * 9 8 7 32 32 H 1.07997 * 120.03386 * 179.97438 * 10 8 7 33 33 H 1.07998 * 120.03023 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47105 * 270.01296 * 13 12 11 35 35 H 1.09005 * 109.47141 * 30.01178 * 13 12 11 36 36 H 1.08992 * 109.47614 * 150.00971 * 13 12 11 37 37 H 0.97007 * 119.99782 * 174.99730 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3798 2.0114 0.5405 5 6 2.2669 1.7916 -1.4423 6 6 3.6840 1.3639 -1.7584 7 6 4.3543 1.0652 -0.5865 8 6 5.6740 0.6494 -0.6343 9 6 6.4053 0.3231 0.6423 10 6 6.3227 0.5327 -1.8484 11 6 5.6526 0.8313 -3.0198 12 6 4.3355 1.2453 -2.9743 13 6 3.6056 1.5700 -4.2521 14 6 3.4334 1.2725 0.5968 15 1 3.5293 0.4454 1.3001 16 6 3.7449 2.5796 1.2791 17 1 4.1248 3.4115 0.7047 18 6 3.5449 2.7133 2.6367 19 7 3.1788 1.6730 3.3530 20 14 3.7940 4.3721 3.4586 21 1 4.2029 5.3727 2.4402 22 1 2.5244 4.8044 4.0960 23 1 4.8535 4.2581 4.4929 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.5666 1.3190 -2.1310 28 1 2.1783 2.8767 -1.4969 29 1 6.1957 -0.7078 0.9277 30 1 7.4773 0.4468 0.4888 31 1 6.0718 0.9942 1.4339 32 1 7.3523 0.2085 -1.8822 33 1 6.1581 0.7402 -3.9699 34 1 3.7395 2.6255 -4.4888 35 1 4.0057 0.9621 -5.0636 36 1 2.5439 1.3573 -4.1283 37 1 3.1084 1.7487 4.3176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:18 Heat of formation + Delta-G solvation = -54.779470 kcal Electronic energy + Delta-G solvation = -18295.624667 eV Core-core repulsion = 15615.276631 eV Total energy + Delta-G solvation = -2680.348036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19853 -38.64557 -35.96389 -34.83825 -34.04783 -30.13427 -29.52508 -28.94913 -27.45534 -25.80025 -25.20898 -22.41496 -21.70499 -20.25342 -18.51948 -17.31612 -17.08865 -16.43726 -16.08112 -15.99837 -15.24686 -15.09844 -14.87394 -14.24411 -14.08548 -13.86464 -13.64056 -13.47981 -13.38942 -12.96313 -12.88044 -12.55512 -12.47632 -12.35832 -12.18112 -12.09254 -11.71165 -11.51163 -11.38002 -11.01519 -10.75535 -10.27536 -9.20592 -9.04774 -8.14709 -6.29430 0.63253 0.74865 1.37000 1.39770 1.51473 2.37786 2.93035 3.05633 3.27680 3.77160 3.96933 4.19306 4.22612 4.35758 4.47322 4.54490 4.55312 4.59219 4.65446 4.77562 4.82444 4.86680 4.88083 4.91298 4.95654 5.01257 5.16669 5.27003 5.32870 5.37546 5.57044 5.66879 5.69709 5.78306 5.91447 6.15452 6.16284 6.41253 6.60164 6.84943 7.37167 8.90590 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.009642 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.099007 B = 2903.379364 C = 3631.976522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.092 3.908 4 H 0.051 0.949 5 C -0.082 4.082 6 C -0.118 4.118 7 C -0.079 4.079 8 C -0.108 4.108 9 C -0.102 4.102 10 C -0.124 4.124 11 C -0.136 4.136 12 C -0.094 4.094 13 C -0.103 4.103 14 C 0.078 3.922 15 H 0.029 0.971 16 C -0.508 4.508 17 H 0.048 0.952 18 C 0.021 3.979 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.097 0.903 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -0.809 -11.493 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C 0.034 3.966 4 H 0.069 0.931 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.080 4.080 8 C -0.108 4.108 9 C -0.158 4.158 10 C -0.142 4.142 11 C -0.154 4.154 12 C -0.094 4.094 13 C -0.160 4.160 14 C 0.059 3.941 15 H 0.047 0.953 16 C -0.546 4.546 17 H 0.067 0.933 18 C -0.179 4.179 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.116 0.884 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.384 -1.009 -11.315 11.366 hybrid contribution -0.207 0.903 1.184 1.503 sum 0.177 -0.106 -10.131 10.133 Atomic orbital electron populations 1.22860 0.80759 1.03211 0.99957 1.87874 1.20661 1.29289 1.94940 1.23149 0.96094 0.82709 0.94628 0.93094 1.21358 0.93355 1.00528 0.96653 1.20573 0.96559 1.01449 0.93270 1.21072 0.94531 0.95734 0.96613 1.19704 0.93485 1.01302 0.96317 1.20616 0.99599 1.00754 0.94866 1.21133 1.00450 1.01321 0.91285 1.21099 0.93798 1.01723 0.98773 1.19756 0.94918 1.00393 0.94326 1.20731 0.99672 1.02267 0.93298 1.18311 0.88012 0.96885 0.90909 0.95308 1.20980 1.43567 0.96933 0.93108 0.93337 1.25751 0.94245 0.99862 0.98036 1.70092 1.47851 1.31157 1.06362 0.85571 0.77918 0.80148 0.78502 1.19086 1.20280 1.20372 0.88433 0.95116 0.92867 0.90008 0.90081 0.92437 0.90145 0.93530 0.83939 0.83191 0.90699 0.89887 0.91914 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.89 113.37 1.23 2.20 16 2 O -0.41 -18.60 10.45 -148.98 -1.56 -20.15 16 3 C 0.09 4.34 3.03 31.51 0.10 4.44 16 4 H 0.05 2.52 7.64 -2.39 -0.02 2.50 16 5 C -0.08 -3.25 6.00 30.52 0.18 -3.07 16 6 C -0.12 -4.91 6.00 -19.60 -0.12 -5.03 16 7 C -0.08 -3.75 5.30 -19.59 -0.10 -3.86 16 8 C -0.11 -4.57 5.88 -19.84 -0.12 -4.69 16 9 C -0.10 -4.11 9.83 71.24 0.70 -3.41 16 10 C -0.12 -4.23 9.67 22.24 0.22 -4.02 16 11 C -0.14 -4.23 9.69 22.24 0.22 -4.01 16 12 C -0.09 -3.18 5.88 -19.84 -0.12 -3.30 16 13 C -0.10 -2.55 9.87 71.24 0.70 -1.84 16 14 C 0.08 4.12 2.15 -11.61 -0.02 4.10 16 15 H 0.03 1.77 7.32 -2.39 -0.02 1.75 16 16 C -0.51 -28.28 7.91 25.60 0.20 -28.08 16 17 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 18 C 0.02 1.16 5.45 84.65 0.46 1.62 16 19 N -0.92 -53.80 12.82 21.45 0.27 -53.52 16 20 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.03 1.06 8.11 -2.39 -0.02 1.04 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 2.82 7.59 -2.39 -0.02 2.81 16 28 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 31 H 0.05 2.20 7.51 -2.38 -0.02 2.18 16 32 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.63 8.08 -2.38 -0.02 1.61 16 36 H 0.06 1.52 7.29 -2.39 -0.02 1.51 16 37 H 0.26 14.63 8.32 -92.70 -0.77 13.85 16 Total: -1.00 -65.81 306.25 5.31 -60.50 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.04 Total: 16.55 kcal Atomic # 6 Polarization: -52.48 SS G_CDS: 3.53 Total: -48.95 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.27 Total: -53.52 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.56 Total: -20.15 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.81 5.31 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.719 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds