Wall clock time and date at job start Mon Mar 30 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99651 * 2 1 4 4 H 1.09005 * 110.72863 * 333.39629 * 3 2 1 5 5 C 1.54347 * 110.82387 * 97.02069 * 3 2 1 6 6 C 1.51368 * 105.16948 * 91.86977 * 5 3 2 7 7 C 1.38255 * 109.75456 * 17.19224 * 6 5 3 8 8 C 1.38457 * 119.84977 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.89228 * 179.97438 * 8 7 6 10 10 C 1.38145 * 120.21288 * 0.02562 * 8 7 6 11 11 C 1.38204 * 119.93567 * 359.97438 * 10 8 7 12 12 C 1.38146 * 119.93586 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.89163 * 179.97438 * 12 11 10 14 14 C 1.51369 * 109.75496 * 359.97438 * 7 6 5 15 15 H 1.09000 * 110.39103 * 223.84597 * 14 7 6 16 16 C 1.50699 * 110.30739 * 101.73230 * 14 7 6 17 17 H 1.08003 * 119.99676 * 329.12270 * 16 14 7 18 18 C 1.37872 * 120.00474 * 149.12196 * 16 14 7 19 19 N 1.31513 * 119.99917 * 5.23738 * 18 16 14 20 20 Si 1.86796 * 120.00133 * 185.24140 * 18 16 14 21 21 H 1.48499 * 109.47101 * 59.99749 * 20 18 16 22 22 H 1.48501 * 109.47410 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47276 * 299.99664 * 20 18 16 24 24 H 1.08998 * 109.47284 * 60.00425 * 1 2 3 25 25 H 1.08997 * 109.47651 * 300.00402 * 1 2 3 26 26 H 1.09005 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08997 * 110.29768 * 210.79564 * 5 3 2 28 28 H 1.09004 * 110.29835 * 332.94678 * 5 3 2 29 29 H 1.09001 * 109.47311 * 84.82478 * 9 8 7 30 30 H 1.08995 * 109.46970 * 204.82585 * 9 8 7 31 31 H 1.09003 * 109.47007 * 324.82176 * 9 8 7 32 32 H 1.07997 * 120.02829 * 179.97438 * 10 8 7 33 33 H 1.08005 * 120.03341 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.47146 * 90.00184 * 13 12 11 35 35 H 1.09004 * 109.47046 * 210.00017 * 13 12 11 36 36 H 1.08996 * 109.47272 * 329.99608 * 13 12 11 37 37 H 0.96995 * 120.00336 * 185.00141 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3343 2.0287 -0.4565 5 6 2.3944 1.7351 1.4318 6 6 3.8332 1.2975 1.6040 7 6 4.3966 1.0466 0.3666 8 6 5.7147 0.6315 0.2809 9 6 6.3295 0.3572 -1.0673 10 6 6.4676 0.4669 1.4274 11 6 5.9044 0.7177 2.6643 12 6 4.5894 1.1320 2.7518 13 6 3.9761 1.4046 4.1012 14 6 3.3745 1.2980 -0.7213 15 1 3.4060 0.5003 -1.4635 16 6 3.6258 2.6314 -1.3770 17 1 4.0547 3.4416 -0.8060 18 6 3.3080 2.8171 -2.7057 19 7 2.6919 1.8663 -3.3735 20 14 3.7528 4.4190 -3.5573 21 1 5.2243 4.6129 -3.5098 22 1 3.3062 4.3679 -4.9727 23 1 3.0819 5.5497 -2.8667 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.3129 2.8169 1.5367 28 1 1.7570 1.2345 2.1607 29 1 6.7011 1.2891 -1.4936 30 1 7.1552 -0.3452 -0.9539 31 1 5.5769 -0.0707 -1.7296 32 1 7.4953 0.1425 1.3571 33 1 6.4917 0.5899 3.5616 34 1 4.1329 2.4499 4.3670 35 1 2.9069 1.1958 4.0632 36 1 4.4448 0.7652 4.8492 37 1 2.5331 1.9668 -4.3251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:20 Heat of formation + Delta-G solvation = -39.572907 kcal Electronic energy + Delta-G solvation = -18295.120521 eV Core-core repulsion = 15615.431892 eV Total energy + Delta-G solvation = -2679.688630 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61680 -37.00801 -34.22566 -33.35611 -32.17930 -28.76484 -27.75229 -27.34626 -25.86245 -24.16744 -23.58625 -20.76206 -20.15911 -18.60256 -16.54253 -15.61443 -15.38004 -14.71406 -14.52380 -14.41719 -13.71436 -13.61552 -13.36759 -12.68025 -12.56324 -12.16384 -12.13090 -12.08266 -11.96237 -11.30060 -11.09919 -11.03459 -10.90855 -10.72304 -10.53249 -10.47480 -10.09382 -9.88692 -9.48579 -9.19563 -8.90979 -8.35963 -7.66676 -7.51747 -6.11047 -4.18482 2.12023 2.26000 3.26649 3.31977 3.35123 4.32318 4.52406 4.74019 5.19517 5.30749 5.45768 5.58628 5.65843 5.74367 5.85771 5.93576 5.98747 6.00925 6.11573 6.16407 6.19031 6.21669 6.26936 6.45369 6.46903 6.52850 6.61392 6.78423 6.91203 7.09978 7.18866 7.24057 7.42559 7.49658 7.75570 7.81917 7.86862 8.12385 8.39176 8.91640 9.46498 10.95528 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.009742 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.741378 B = 2873.545005 C = 3651.525110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.383 6.383 3 C 0.090 3.910 4 H 0.073 0.927 5 C -0.092 4.092 6 C -0.099 4.099 7 C -0.040 4.040 8 C -0.082 4.082 9 C -0.102 4.102 10 C -0.127 4.127 11 C -0.142 4.142 12 C -0.092 4.092 13 C -0.106 4.106 14 C 0.080 3.920 15 H 0.074 0.926 16 C -0.503 4.503 17 H 0.057 0.943 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -1.801 8.420 8.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.033 3.967 4 H 0.091 0.909 5 C -0.130 4.130 6 C -0.099 4.099 7 C -0.041 4.041 8 C -0.082 4.082 9 C -0.159 4.159 10 C -0.145 4.145 11 C -0.160 4.160 12 C -0.092 4.092 13 C -0.163 4.163 14 C 0.062 3.938 15 H 0.092 0.908 16 C -0.540 4.540 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.518 5.518 20 Si 0.718 3.282 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.952 -1.987 8.237 8.527 hybrid contribution 0.082 1.136 -0.406 1.209 sum 1.034 -0.852 7.831 7.945 Atomic orbital electron populations 1.22611 0.83280 1.01128 0.99143 1.87912 1.17856 1.29723 1.94667 1.23418 0.97534 0.82804 0.92976 0.90896 1.21480 0.92488 1.00221 0.98781 1.20372 0.96127 1.00451 0.92928 1.21102 0.93912 0.92727 0.96309 1.19407 0.93371 1.00340 0.95056 1.20632 0.99768 1.01100 0.94414 1.20751 0.98843 1.02709 0.92229 1.20581 0.94567 1.03957 0.96937 1.19270 0.93994 1.01810 0.94081 1.20672 1.00523 1.01029 0.94035 1.18486 0.85208 0.98833 0.91307 0.90798 1.20774 1.41746 0.96157 0.95361 0.92474 1.24998 0.94093 0.96833 0.97565 1.69978 1.39534 1.33561 1.08712 0.86668 0.79127 0.83849 0.78516 1.20045 1.21188 1.20124 0.94265 0.95430 0.91054 0.90511 0.92163 0.91454 0.93437 0.91122 0.87132 0.87260 0.92071 0.92126 0.92503 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.85 101.05 1.10 1.72 16 2 O -0.38 -8.55 10.45 -35.23 -0.37 -8.92 16 3 C 0.09 2.07 3.08 -25.33 -0.08 1.99 16 4 H 0.07 1.74 7.58 -51.93 -0.39 1.35 16 5 C -0.09 -1.87 6.00 -26.85 -0.16 -2.03 16 6 C -0.10 -2.08 6.00 -104.21 -0.63 -2.71 16 7 C -0.04 -0.93 5.30 -104.21 -0.55 -1.48 16 8 C -0.08 -1.72 5.88 -104.58 -0.62 -2.33 16 9 C -0.10 -1.99 9.83 36.01 0.35 -1.63 16 10 C -0.13 -2.33 9.67 -39.63 -0.38 -2.71 16 11 C -0.14 -2.48 9.69 -39.63 -0.38 -2.87 16 12 C -0.09 -1.69 5.88 -104.58 -0.62 -2.30 16 13 C -0.11 -1.54 9.87 36.01 0.36 -1.18 16 14 C 0.08 2.02 2.17 -91.90 -0.20 1.82 16 15 H 0.07 2.09 7.02 -51.93 -0.36 1.73 16 16 C -0.50 -13.37 8.24 -34.44 -0.28 -13.66 16 17 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 18 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 19 N -0.88 -24.56 12.89 55.43 0.71 -23.84 16 20 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.06 1.10 7.59 -51.93 -0.39 0.71 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.05 0.76 8.05 -51.93 -0.42 0.35 16 31 H 0.07 1.49 7.49 -51.93 -0.39 1.10 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.86 7.29 -51.93 -0.38 0.48 16 36 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -28.74 306.29 -7.93 -36.67 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.68 Total: 1.44 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -2.19 Total: -25.64 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.71 Total: -23.84 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.37 Total: -8.92 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.74 -7.93 -36.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.898 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds