Wall clock time and date at job start Mon Mar 30 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99651 * 2 1 4 4 H 1.09005 * 110.72863 * 333.39629 * 3 2 1 5 5 C 1.54347 * 110.82387 * 97.02069 * 3 2 1 6 6 C 1.51368 * 105.16948 * 91.86977 * 5 3 2 7 7 C 1.38255 * 109.75456 * 17.19224 * 6 5 3 8 8 C 1.38457 * 119.84977 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.89228 * 179.97438 * 8 7 6 10 10 C 1.38145 * 120.21288 * 0.02562 * 8 7 6 11 11 C 1.38204 * 119.93567 * 359.97438 * 10 8 7 12 12 C 1.38146 * 119.93586 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.89163 * 179.97438 * 12 11 10 14 14 C 1.51369 * 109.75496 * 359.97438 * 7 6 5 15 15 H 1.09000 * 110.39103 * 223.84597 * 14 7 6 16 16 C 1.50699 * 110.30739 * 101.73230 * 14 7 6 17 17 H 1.08003 * 119.99676 * 329.12270 * 16 14 7 18 18 C 1.37872 * 120.00474 * 149.12196 * 16 14 7 19 19 N 1.31513 * 119.99917 * 5.23738 * 18 16 14 20 20 Si 1.86796 * 120.00133 * 185.24140 * 18 16 14 21 21 H 1.48499 * 109.47101 * 59.99749 * 20 18 16 22 22 H 1.48501 * 109.47410 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47276 * 299.99664 * 20 18 16 24 24 H 1.08998 * 109.47284 * 60.00425 * 1 2 3 25 25 H 1.08997 * 109.47651 * 300.00402 * 1 2 3 26 26 H 1.09005 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08997 * 110.29768 * 210.79564 * 5 3 2 28 28 H 1.09004 * 110.29835 * 332.94678 * 5 3 2 29 29 H 1.09001 * 109.47311 * 84.82478 * 9 8 7 30 30 H 1.08995 * 109.46970 * 204.82585 * 9 8 7 31 31 H 1.09003 * 109.47007 * 324.82176 * 9 8 7 32 32 H 1.07997 * 120.02829 * 179.97438 * 10 8 7 33 33 H 1.08005 * 120.03341 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.47146 * 90.00184 * 13 12 11 35 35 H 1.09004 * 109.47046 * 210.00017 * 13 12 11 36 36 H 1.08996 * 109.47272 * 329.99608 * 13 12 11 37 37 H 0.96995 * 120.00336 * 185.00141 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3343 2.0287 -0.4565 5 6 2.3944 1.7351 1.4318 6 6 3.8332 1.2975 1.6040 7 6 4.3966 1.0466 0.3666 8 6 5.7147 0.6315 0.2809 9 6 6.3295 0.3572 -1.0673 10 6 6.4676 0.4669 1.4274 11 6 5.9044 0.7177 2.6643 12 6 4.5894 1.1320 2.7518 13 6 3.9761 1.4046 4.1012 14 6 3.3745 1.2980 -0.7213 15 1 3.4060 0.5003 -1.4635 16 6 3.6258 2.6314 -1.3770 17 1 4.0547 3.4416 -0.8060 18 6 3.3080 2.8171 -2.7057 19 7 2.6919 1.8663 -3.3735 20 14 3.7528 4.4190 -3.5573 21 1 5.2243 4.6129 -3.5098 22 1 3.3062 4.3679 -4.9727 23 1 3.0819 5.5497 -2.8667 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.3129 2.8169 1.5367 28 1 1.7570 1.2345 2.1607 29 1 6.7011 1.2891 -1.4936 30 1 7.1552 -0.3452 -0.9539 31 1 5.5769 -0.0707 -1.7296 32 1 7.4953 0.1425 1.3571 33 1 6.4917 0.5899 3.5616 34 1 4.1329 2.4499 4.3670 35 1 2.9069 1.1958 4.0632 36 1 4.4448 0.7652 4.8492 37 1 2.5331 1.9668 -4.3251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:20 Heat of formation + Delta-G solvation = -54.817635 kcal Electronic energy + Delta-G solvation = -18295.781582 eV Core-core repulsion = 15615.431892 eV Total energy + Delta-G solvation = -2680.349691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19551 -38.63305 -35.95851 -34.84312 -34.05591 -30.14047 -29.51361 -28.97411 -27.41867 -25.79619 -25.23665 -22.41113 -21.70773 -20.25463 -18.51995 -17.29457 -17.09630 -16.44886 -16.06879 -15.99154 -15.23699 -15.08088 -14.90036 -14.24450 -14.13559 -13.80307 -13.64323 -13.51594 -13.38589 -12.93914 -12.89016 -12.57237 -12.46708 -12.36237 -12.19765 -12.07487 -11.75156 -11.52562 -11.36022 -11.02222 -10.78367 -10.21864 -9.20815 -9.05204 -8.15507 -6.30129 0.63048 0.74590 1.39537 1.40356 1.48721 2.38532 2.94499 3.06212 3.26725 3.77383 3.97109 4.19077 4.22521 4.36170 4.47244 4.54525 4.55932 4.58950 4.65512 4.78286 4.82813 4.86816 4.88487 4.92058 4.94672 5.01407 5.16356 5.22598 5.32788 5.39181 5.53364 5.66060 5.69421 5.77837 5.90971 6.14996 6.15713 6.40819 6.60631 6.83496 7.37379 8.90228 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.009742 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.741378 B = 2873.545005 C = 3651.525110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.094 3.906 4 H 0.051 0.949 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.080 4.080 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.124 4.124 11 C -0.136 4.136 12 C -0.094 4.094 13 C -0.103 4.103 14 C 0.079 3.921 15 H 0.025 0.975 16 C -0.510 4.510 17 H 0.048 0.952 18 C 0.021 3.979 19 N -0.915 5.915 20 Si 0.952 3.048 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -1.505 11.126 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.036 3.964 4 H 0.069 0.931 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.080 4.080 8 C -0.109 4.109 9 C -0.152 4.152 10 C -0.141 4.141 11 C -0.153 4.153 12 C -0.094 4.094 13 C -0.160 4.160 14 C 0.061 3.939 15 H 0.043 0.957 16 C -0.547 4.547 17 H 0.067 0.933 18 C -0.179 4.179 19 N -0.553 5.553 20 Si 0.777 3.223 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.193 1.193 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.008 -1.688 10.955 11.265 hybrid contribution -0.236 0.962 -1.184 1.544 sum 1.772 -0.726 9.771 9.957 Atomic orbital electron populations 1.22843 0.80803 1.03140 0.99816 1.87852 1.20607 1.29359 1.94929 1.23126 0.95947 0.82687 0.94598 0.93131 1.21338 0.92868 1.00524 0.97067 1.20563 0.96463 1.01419 0.93327 1.21071 0.94835 0.95772 0.96363 1.19706 0.93242 1.01341 0.96562 1.20555 0.99836 1.01235 0.93588 1.21128 1.00043 1.01425 0.91540 1.21102 0.94405 1.01763 0.98056 1.19758 0.94375 1.00311 0.94936 1.20733 1.00618 1.02469 0.92167 1.18313 0.87814 0.96445 0.91353 0.95652 1.20950 1.41266 0.96715 0.95808 0.93346 1.25728 0.94077 0.99848 0.98209 1.70106 1.40907 1.35525 1.08806 0.85707 0.78919 0.80166 0.77537 1.19620 1.20742 1.19329 0.95345 0.92951 0.88398 0.90140 0.90048 0.92397 0.89944 0.94322 0.83852 0.83153 0.90690 0.91952 0.89859 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 10.85 113.37 1.23 2.29 16 2 O -0.41 -18.76 10.45 -148.98 -1.56 -20.31 16 3 C 0.09 4.49 3.08 31.50 0.10 4.58 16 4 H 0.05 2.55 7.58 -2.38 -0.02 2.53 16 5 C -0.08 -3.25 6.00 30.52 0.18 -3.06 16 6 C -0.12 -4.89 6.00 -19.60 -0.12 -5.00 16 7 C -0.08 -3.79 5.30 -19.60 -0.10 -3.89 16 8 C -0.11 -4.55 5.88 -19.83 -0.12 -4.67 16 9 C -0.10 -3.80 9.83 71.24 0.70 -3.10 16 10 C -0.12 -4.17 9.67 22.24 0.22 -3.96 16 11 C -0.14 -4.18 9.69 22.24 0.22 -3.96 16 12 C -0.09 -3.17 5.88 -19.83 -0.12 -3.29 16 13 C -0.10 -2.56 9.87 71.24 0.70 -1.85 16 14 C 0.08 4.23 2.17 -11.62 -0.03 4.20 16 15 H 0.03 1.56 7.02 -2.39 -0.02 1.54 16 16 C -0.51 -28.40 8.24 25.60 0.21 -28.19 16 17 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 18 C 0.02 1.18 5.45 84.65 0.46 1.64 16 19 N -0.92 -53.69 12.89 21.45 0.28 -53.42 16 20 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 24 H 0.03 1.03 8.11 -2.39 -0.02 1.01 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 27 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.08 2.85 7.59 -2.38 -0.02 2.84 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.59 8.05 -2.39 -0.02 2.57 16 31 H 0.04 1.74 7.49 -2.39 -0.02 1.72 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.53 7.29 -2.38 -0.02 1.51 16 36 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.26 14.69 8.32 -92.71 -0.77 13.92 16 Total: -1.00 -65.67 306.29 5.32 -60.35 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.04 Total: 16.04 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 3.54 Total: -48.26 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.28 Total: -53.42 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.56 Total: -20.31 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.67 5.32 -60.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.533 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds