Wall clock time and date at job start Mon Mar 30 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38234 * 119.99942 * 2 1 4 4 C 1.38233 * 120.00096 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99854 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99999 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47091 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.46930 * 119.99971 * 6 5 4 9 9 H 1.08002 * 119.99825 * 94.79268 * 8 6 5 10 10 C 1.37884 * 120.00037 * 274.79051 * 8 6 5 11 11 N 1.31513 * 119.99587 * 184.91199 * 10 8 6 12 12 Si 1.86794 * 120.00012 * 4.91675 * 10 8 6 13 13 H 1.48498 * 109.47352 * 84.58529 * 12 10 8 14 14 H 1.48503 * 109.46980 * 204.58496 * 12 10 8 15 15 H 1.48508 * 109.47070 * 324.58079 * 12 10 8 16 16 C 1.52997 * 109.47304 * 239.99921 * 6 5 4 17 17 H 1.08997 * 110.80227 * 292.19198 * 16 6 5 18 18 C 1.54812 * 110.90425 * 55.82313 * 16 6 5 19 19 C 1.54101 * 104.18500 * 139.08015 * 18 16 6 20 20 O 1.43747 * 107.29633 * 2.02288 * 19 18 16 21 21 C 1.44377 * 106.97785 * 333.49076 * 20 19 18 22 22 C 1.38234 * 120.00221 * 0.25546 * 5 4 3 23 23 C 1.38236 * 120.00009 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47319 * 89.99839 * 1 2 3 25 25 H 1.09008 * 109.47183 * 210.00075 * 1 2 3 26 26 H 1.09001 * 109.47630 * 329.99859 * 1 2 3 27 27 H 1.08003 * 120.00304 * 359.97438 * 3 2 1 28 28 H 1.08007 * 120.00547 * 180.02562 * 4 3 2 29 29 H 0.97004 * 119.99546 * 179.97438 * 11 10 8 30 30 H 1.09000 * 110.49003 * 20.40155 * 18 16 6 31 31 H 1.08996 * 110.48478 * 257.75203 * 18 16 6 32 32 H 1.09002 * 109.88025 * 121.45360 * 19 18 16 33 33 H 1.09005 * 109.87852 * 242.60131 * 19 18 16 34 34 H 1.08997 * 110.61822 * 281.55868 * 21 20 19 35 35 H 1.08994 * 110.75398 * 158.62126 * 21 20 19 36 36 H 1.07994 * 120.00133 * 179.73024 * 22 5 4 37 37 H 1.07995 * 120.00153 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7786 0.0000 0.0005 7 1 6.1420 1.0277 0.0010 8 6 6.2809 -0.7104 1.2310 9 1 6.5346 -1.7591 1.1833 10 6 6.4167 -0.0215 2.4177 11 7 6.9453 -0.6148 3.4656 12 14 5.8497 1.7543 2.5369 13 1 4.3958 1.7907 2.8368 14 1 6.5962 2.4405 3.6218 15 1 6.1066 2.4436 1.2468 16 6 6.2887 -0.7212 -1.2487 17 1 6.0549 -1.7849 -1.2041 18 6 5.7069 -0.0809 -2.5325 19 6 6.8931 -0.0617 -3.5159 20 8 8.0080 -0.6811 -2.8528 21 6 7.8110 -0.4960 -1.4346 22 6 3.5805 -1.1971 -0.0053 23 6 2.1981 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6581 2.1325 -0.0004 28 1 4.1205 2.1325 0.0010 29 1 7.0411 -0.1300 4.3003 30 1 5.3622 0.9333 -2.3305 31 1 4.8937 -0.6896 -2.9275 32 1 6.6383 -0.6226 -4.4151 33 1 7.1419 0.9671 -3.7765 34 1 8.0885 0.5153 -1.1373 35 1 8.3800 -1.2316 -0.8663 36 1 4.1205 -2.1324 -0.0097 37 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:53 Heat of formation + Delta-G solvation = -38.434034 kcal Electronic energy + Delta-G solvation = -18149.023721 eV Core-core repulsion = 15469.384476 eV Total energy + Delta-G solvation = -2679.639244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38192 -38.31712 -34.76069 -32.18333 -31.36573 -30.27247 -29.46199 -27.49530 -25.48775 -22.83298 -22.19065 -21.65051 -20.55879 -19.06364 -17.05780 -15.92512 -15.43345 -15.26479 -14.72369 -14.57511 -14.35700 -13.86637 -13.39995 -13.05713 -12.79511 -12.68353 -12.36934 -12.08506 -11.84550 -11.70957 -11.57641 -10.99610 -10.91385 -10.75985 -10.50883 -10.27767 -10.06977 -9.78448 -9.62384 -9.20951 -9.16480 -8.65464 -8.24554 -7.66149 -6.17703 -4.17848 2.05268 2.08534 3.24598 3.30838 3.34386 4.33787 4.43794 4.51854 5.06727 5.24617 5.29684 5.32518 5.35598 5.50256 5.58989 5.64304 5.77225 5.80453 5.85203 5.98498 6.06594 6.11168 6.22493 6.28709 6.31310 6.36233 6.49668 6.59496 6.66144 6.74971 6.79966 7.04539 7.15455 7.21055 7.39528 7.51586 7.62138 7.75192 8.39308 8.85580 9.43983 10.94317 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.011198 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.752973 B = 2499.839047 C = 3719.198457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.121 4.121 3 C -0.121 4.121 4 C -0.141 4.141 5 C -0.037 4.037 6 C 0.047 3.953 7 H 0.047 0.953 8 C -0.506 4.506 9 H 0.078 0.922 10 C 0.079 3.921 11 N -0.893 5.893 12 Si 0.865 3.135 13 H -0.269 1.269 14 H -0.291 1.291 15 H -0.263 1.263 16 C -0.091 4.091 17 H 0.077 0.923 18 C -0.155 4.155 19 C 0.048 3.952 20 O -0.391 6.391 21 C 0.061 3.939 22 C -0.099 4.099 23 C -0.123 4.123 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.265 0.735 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 2.533 -9.378 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.121 4.121 3 C -0.140 4.140 4 C -0.159 4.159 5 C -0.038 4.038 6 C 0.028 3.972 7 H 0.065 0.935 8 C -0.543 4.543 9 H 0.096 0.904 10 C -0.124 4.124 11 N -0.529 5.529 12 Si 0.693 3.307 13 H -0.194 1.194 14 H -0.217 1.217 15 H -0.188 1.188 16 C -0.110 4.110 17 H 0.096 0.904 18 C -0.193 4.193 19 C -0.029 4.029 20 O -0.311 6.311 21 C -0.015 4.015 22 C -0.117 4.117 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.253 2.448 -9.268 12.020 hybrid contribution -0.594 1.145 0.536 1.397 sum -7.847 3.593 -8.732 12.277 Atomic orbital electron populations 1.20668 0.92238 1.01919 1.01315 1.19649 0.95186 0.93445 1.03783 1.20817 0.94209 0.96797 1.02130 1.21049 0.93927 0.97874 1.03090 1.20681 0.98254 0.91993 0.92834 1.18434 0.87272 0.97525 0.93943 0.93515 1.20868 1.43125 0.98320 0.91989 0.90382 1.24984 0.93955 0.97782 0.95710 1.69886 1.43390 1.37481 1.02186 0.87068 0.79819 0.85906 0.77896 1.19415 1.21702 1.18782 1.22596 0.94320 1.00433 0.93607 0.90414 1.23046 0.97947 1.01951 0.96326 1.23077 0.86704 0.97075 0.96004 1.88791 1.44285 1.78383 1.19614 1.23546 0.96387 1.01473 0.80092 1.20921 0.93064 0.98382 0.99345 1.20934 0.94530 0.96708 1.01914 0.92116 0.92192 0.92356 0.87401 0.87380 0.92492 0.91061 0.91296 0.90883 0.93312 0.92478 0.88513 0.86281 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.01 36.00 0.36 -0.96 16 2 C -0.12 -1.99 5.88 -104.63 -0.62 -2.61 16 3 C -0.12 -2.11 9.70 -39.58 -0.38 -2.50 16 4 C -0.14 -2.76 8.26 -39.58 -0.33 -3.08 16 5 C -0.04 -0.76 3.29 -104.62 -0.34 -1.11 16 6 C 0.05 1.03 1.05 -92.92 -0.10 0.93 16 7 H 0.05 1.06 5.31 -51.93 -0.28 0.78 16 8 C -0.51 -13.14 8.23 -34.44 -0.28 -13.43 16 9 H 0.08 2.20 8.05 -52.49 -0.42 1.78 16 10 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 12 Si 0.87 21.05 25.18 -169.99 -4.28 16.77 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.26 -5.98 6.06 56.52 0.34 -5.64 16 16 C -0.09 -1.73 2.33 -88.61 -0.21 -1.93 16 17 H 0.08 1.51 7.74 -51.93 -0.40 1.11 16 18 C -0.15 -2.51 5.87 -25.20 -0.15 -2.66 16 19 C 0.05 0.74 7.70 37.73 0.29 1.03 16 20 O -0.39 -7.14 11.52 -35.23 -0.41 -7.54 16 21 C 0.06 1.15 6.89 38.22 0.26 1.41 16 22 C -0.10 -1.94 8.90 -39.58 -0.35 -2.29 16 23 C -0.12 -2.13 9.70 -39.58 -0.38 -2.51 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.11 2.05 7.29 -52.48 -0.38 1.67 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 1.15 7.70 -51.93 -0.40 0.75 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 35 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.12 2.31 7.73 -52.49 -0.41 1.91 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -28.79 297.28 -7.45 -36.24 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.69 Total: 3.24 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -2.33 Total: -27.62 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.41 Total: -7.54 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.28 Total: 16.77 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.79 -7.45 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.194 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds