Wall clock time and date at job start Mon Mar 30 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38234 * 119.99942 * 2 1 4 4 C 1.38233 * 120.00096 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99854 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99999 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47091 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.46930 * 119.99971 * 6 5 4 9 9 H 1.08002 * 119.99825 * 94.79268 * 8 6 5 10 10 C 1.37884 * 120.00037 * 274.79051 * 8 6 5 11 11 N 1.31513 * 119.99587 * 184.91199 * 10 8 6 12 12 Si 1.86794 * 120.00012 * 4.91675 * 10 8 6 13 13 H 1.48498 * 109.47352 * 84.58529 * 12 10 8 14 14 H 1.48503 * 109.46980 * 204.58496 * 12 10 8 15 15 H 1.48508 * 109.47070 * 324.58079 * 12 10 8 16 16 C 1.52997 * 109.47304 * 239.99921 * 6 5 4 17 17 H 1.08997 * 110.80227 * 292.19198 * 16 6 5 18 18 C 1.54812 * 110.90425 * 55.82313 * 16 6 5 19 19 C 1.54101 * 104.18500 * 139.08015 * 18 16 6 20 20 O 1.43747 * 107.29633 * 2.02288 * 19 18 16 21 21 C 1.44377 * 106.97785 * 333.49076 * 20 19 18 22 22 C 1.38234 * 120.00221 * 0.25546 * 5 4 3 23 23 C 1.38236 * 120.00009 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47319 * 89.99839 * 1 2 3 25 25 H 1.09008 * 109.47183 * 210.00075 * 1 2 3 26 26 H 1.09001 * 109.47630 * 329.99859 * 1 2 3 27 27 H 1.08003 * 120.00304 * 359.97438 * 3 2 1 28 28 H 1.08007 * 120.00547 * 180.02562 * 4 3 2 29 29 H 0.97004 * 119.99546 * 179.97438 * 11 10 8 30 30 H 1.09000 * 110.49003 * 20.40155 * 18 16 6 31 31 H 1.08996 * 110.48478 * 257.75203 * 18 16 6 32 32 H 1.09002 * 109.88025 * 121.45360 * 19 18 16 33 33 H 1.09005 * 109.87852 * 242.60131 * 19 18 16 34 34 H 1.08997 * 110.61822 * 281.55868 * 21 20 19 35 35 H 1.08994 * 110.75398 * 158.62126 * 21 20 19 36 36 H 1.07994 * 120.00133 * 179.73024 * 22 5 4 37 37 H 1.07995 * 120.00153 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0000 0.0005 6 6 5.7786 0.0000 0.0005 7 1 6.1420 1.0277 0.0010 8 6 6.2809 -0.7104 1.2310 9 1 6.5346 -1.7591 1.1833 10 6 6.4167 -0.0215 2.4177 11 7 6.9453 -0.6148 3.4656 12 14 5.8497 1.7543 2.5369 13 1 4.3958 1.7907 2.8368 14 1 6.5962 2.4405 3.6218 15 1 6.1066 2.4436 1.2468 16 6 6.2887 -0.7212 -1.2487 17 1 6.0549 -1.7849 -1.2041 18 6 5.7069 -0.0809 -2.5325 19 6 6.8931 -0.0617 -3.5159 20 8 8.0080 -0.6811 -2.8528 21 6 7.8110 -0.4960 -1.4346 22 6 3.5805 -1.1971 -0.0053 23 6 2.1981 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6581 2.1325 -0.0004 28 1 4.1205 2.1325 0.0010 29 1 7.0411 -0.1300 4.3003 30 1 5.3622 0.9333 -2.3305 31 1 4.8937 -0.6896 -2.9275 32 1 6.6383 -0.6226 -4.4151 33 1 7.1419 0.9671 -3.7765 34 1 8.0885 0.5153 -1.1373 35 1 8.3800 -1.2316 -0.8663 36 1 4.1205 -2.1324 -0.0097 37 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:53 Heat of formation + Delta-G solvation = -54.703192 kcal Electronic energy + Delta-G solvation = -18149.729204 eV Core-core repulsion = 15469.384476 eV Total energy + Delta-G solvation = -2680.344728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84462 -39.70412 -36.35701 -34.13274 -32.70274 -31.67402 -30.91334 -28.97597 -27.06034 -24.43926 -23.62458 -23.06718 -21.95927 -20.60834 -19.02573 -17.38642 -16.88971 -16.84666 -16.20275 -16.12570 -15.72465 -15.42518 -14.72518 -14.48988 -14.41562 -14.17623 -13.82328 -13.54376 -13.37912 -13.15029 -12.92832 -12.62814 -12.30746 -12.23595 -11.98817 -11.81889 -11.69008 -11.54330 -11.21430 -11.04390 -10.71626 -10.55668 -9.66658 -9.10508 -8.30299 -6.32222 0.63122 0.67471 1.29851 1.34762 1.39454 2.31910 2.97748 3.09221 3.12408 3.79670 3.92292 4.08129 4.13251 4.16796 4.27519 4.31459 4.41710 4.50777 4.59662 4.76767 4.82233 4.86878 4.91052 4.95418 4.97745 5.00269 5.05183 5.10127 5.19071 5.33296 5.44188 5.46145 5.61744 5.73591 5.81820 5.98192 6.00092 6.30660 6.35120 6.73549 7.32078 8.85450 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.011198 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.752973 B = 2499.839047 C = 3719.198457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.116 4.116 3 C -0.125 4.125 4 C -0.154 4.154 5 C -0.059 4.059 6 C 0.054 3.946 7 H 0.041 0.959 8 C -0.494 4.494 9 H 0.039 0.961 10 C 0.022 3.978 11 N -0.944 5.944 12 Si 0.919 3.081 13 H -0.268 1.268 14 H -0.295 1.295 15 H -0.238 1.238 16 C -0.092 4.092 17 H 0.065 0.935 18 C -0.144 4.144 19 C 0.045 3.955 20 O -0.403 6.403 21 C 0.063 3.937 22 C -0.118 4.118 23 C -0.126 4.126 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.111 0.889 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 4.159 -11.227 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C -0.142 4.142 4 C -0.172 4.172 5 C -0.060 4.060 6 C 0.035 3.965 7 H 0.059 0.941 8 C -0.531 4.531 9 H 0.058 0.942 10 C -0.176 4.176 11 N -0.585 5.585 12 Si 0.745 3.255 13 H -0.193 1.193 14 H -0.221 1.221 15 H -0.161 1.161 16 C -0.111 4.111 17 H 0.083 0.917 18 C -0.181 4.181 19 C -0.031 4.031 20 O -0.323 6.323 21 C -0.013 4.013 22 C -0.136 4.136 23 C -0.144 4.144 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.851 4.079 -11.157 15.432 hybrid contribution 0.139 0.536 1.034 1.173 sum -9.711 4.615 -10.122 14.767 Atomic orbital electron populations 1.20741 0.89039 1.03187 1.02987 1.20154 0.97520 0.92624 1.01261 1.21190 0.93489 0.98536 1.01028 1.21187 0.95178 0.97315 1.03541 1.20450 0.97026 0.93123 0.95373 1.18270 0.88728 0.96562 0.92938 0.94068 1.21072 1.41644 0.96759 0.93670 0.94241 1.25729 0.94536 1.01839 0.95499 1.70032 1.46175 1.39306 1.02943 0.86193 0.79058 0.81546 0.78751 1.19319 1.22150 1.16116 1.22488 0.94598 0.99716 0.94267 0.91663 1.22951 0.98566 1.01932 0.94677 1.23312 0.85220 0.98474 0.96142 1.88774 1.45665 1.78960 1.18891 1.23413 0.96199 1.00847 0.80850 1.20955 0.94415 0.97612 1.00624 1.21234 0.93614 0.98491 1.01036 0.90094 0.91127 0.91002 0.84454 0.87064 0.92730 0.90699 0.90141 0.88348 0.91514 0.92584 0.90084 0.87678 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.01 71.23 0.71 -1.39 16 2 C -0.12 -3.39 5.88 -19.87 -0.12 -3.51 16 3 C -0.12 -3.89 9.70 22.27 0.22 -3.67 16 4 C -0.15 -5.66 8.26 22.27 0.18 -5.47 16 5 C -0.06 -2.40 3.29 -19.86 -0.07 -2.46 16 6 C 0.05 2.36 1.05 -12.28 -0.01 2.35 16 7 H 0.04 1.84 5.31 -2.39 -0.01 1.82 16 8 C -0.49 -26.71 8.23 25.60 0.21 -26.50 16 9 H 0.04 2.38 8.05 -2.91 -0.02 2.35 16 10 C 0.02 1.24 5.47 84.66 0.46 1.70 16 11 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 12 Si 0.92 43.69 25.18 68.60 1.73 45.42 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 14 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 15 H -0.24 -10.19 6.06 99.48 0.60 -9.58 16 16 C -0.09 -3.52 2.33 -9.49 -0.02 -3.54 16 17 H 0.06 2.63 7.74 -2.39 -0.02 2.61 16 18 C -0.14 -4.39 5.87 31.59 0.19 -4.20 16 19 C 0.04 1.26 7.70 72.35 0.56 1.81 16 20 O -0.40 -14.32 11.52 -148.98 -1.72 -16.04 16 21 C 0.06 2.42 6.89 72.67 0.50 2.92 16 22 C -0.12 -4.56 8.90 22.27 0.20 -4.36 16 23 C -0.13 -4.07 9.70 22.27 0.22 -3.86 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.32 8.09 -2.38 -0.02 1.30 16 26 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.11 3.93 7.29 -2.91 -0.02 3.91 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.07 2.25 7.70 -2.39 -0.02 2.23 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.06 2.14 7.94 -2.39 -0.02 2.12 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.11 4.23 7.73 -2.91 -0.02 4.21 16 37 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -63.78 297.28 4.47 -59.32 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.93 Total: 19.37 kcal Atomic # 6 Polarization: -53.41 SS G_CDS: 3.23 Total: -50.19 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.30 Total: -57.88 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.72 Total: -16.04 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.73 Total: 45.42 kcal Total: -63.78 4.47 -59.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.612 kcal (2) G-P(sol) polarization free energy of solvation -63.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds