Wall clock time and date at job start Mon Mar 30 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38231 * 120.00074 * 2 1 4 4 C 1.38236 * 119.99918 * 179.72462 * 3 2 1 5 5 C 1.38233 * 119.99859 * 0.25846 * 4 3 2 6 6 C 1.50704 * 119.99842 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46862 * 355.68274 * 6 5 4 8 8 C 1.50698 * 109.46728 * 115.68398 * 6 5 4 9 9 H 1.07996 * 120.00258 * 94.65029 * 8 6 5 10 10 C 1.37884 * 119.99819 * 274.64483 * 8 6 5 11 11 N 1.31513 * 119.99392 * 184.84182 * 10 8 6 12 12 Si 1.86791 * 120.00020 * 4.84113 * 10 8 6 13 13 H 1.48496 * 109.47137 * 84.60537 * 12 10 8 14 14 H 1.48504 * 109.47022 * 204.60437 * 12 10 8 15 15 H 1.48500 * 109.47642 * 324.60094 * 12 10 8 16 16 C 1.52993 * 109.47229 * 235.68472 * 6 5 4 17 17 H 1.09004 * 110.80562 * 303.63315 * 16 6 5 18 18 C 1.54812 * 110.90952 * 180.02562 * 16 6 5 19 19 C 1.54099 * 104.18960 * 220.91912 * 18 16 6 20 20 O 1.43746 * 107.29338 * 357.97247 * 19 18 16 21 21 C 1.44374 * 106.97801 * 26.50882 * 20 19 18 22 22 C 1.38228 * 120.00171 * 0.02562 * 5 4 3 23 23 C 1.38233 * 119.99869 * 180.24153 * 2 1 3 24 24 H 1.09005 * 109.47046 * 89.99579 * 1 2 3 25 25 H 1.08995 * 109.47348 * 209.99186 * 1 2 3 26 26 H 1.09000 * 109.47054 * 329.99794 * 1 2 3 27 27 H 1.08002 * 119.99942 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99816 * 180.28297 * 4 3 2 29 29 H 0.97008 * 119.99304 * 179.97438 * 11 10 8 30 30 H 1.08999 * 110.48206 * 339.59703 * 18 16 6 31 31 H 1.08996 * 110.48975 * 102.24102 * 18 16 6 32 32 H 1.09000 * 109.87758 * 117.38647 * 19 18 16 33 33 H 1.08997 * 109.88299 * 238.54284 * 19 18 16 34 34 H 1.08999 * 110.62162 * 201.44248 * 21 20 19 35 35 H 1.09003 * 110.62121 * 78.44134 * 21 20 19 36 36 H 1.08002 * 120.00480 * 179.97438 * 22 5 4 37 37 H 1.08002 * 120.00270 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0058 5 6 4.2717 -0.0001 0.0061 6 6 5.7787 -0.0001 0.0118 7 1 6.1423 1.0248 -0.0623 8 6 6.2761 -0.6183 1.2930 9 1 6.5274 -1.6682 1.3240 10 6 6.4104 0.1565 2.4256 11 7 6.9336 -0.3590 3.5165 12 14 5.8493 1.9381 2.4104 13 1 4.3947 2.0014 2.7021 14 1 6.5951 2.7007 3.4436 15 1 6.1123 2.5286 1.0734 16 6 6.2932 -0.8110 -1.1792 17 1 5.8901 -1.8236 -1.1612 18 6 7.8410 -0.8334 -1.2051 19 6 8.1963 -0.6639 -2.6949 20 8 6.9596 -0.6064 -3.4253 21 6 5.9563 -0.1041 -2.5168 22 6 3.5805 -1.1972 0.0002 23 6 2.1982 -1.1971 -0.0050 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 0.0004 28 1 4.1206 2.1324 0.0104 29 1 7.0284 0.1863 4.3133 30 1 8.2442 -0.0068 -0.6201 31 1 8.2151 -1.7858 -0.8296 32 1 8.7554 0.2606 -2.8397 33 1 8.7879 -1.5142 -3.0340 34 1 4.9581 -0.3805 -2.8562 35 1 6.0411 0.9775 -2.4111 36 1 4.1205 -2.1325 0.0000 37 1 1.6582 -2.1325 -0.0094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:55 Heat of formation + Delta-G solvation = -38.033056 kcal Electronic energy + Delta-G solvation = -18131.923160 eV Core-core repulsion = 15452.301303 eV Total energy + Delta-G solvation = -2679.621857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36600 -38.33574 -34.76761 -32.13778 -31.48183 -30.27362 -29.25143 -27.58965 -25.57418 -22.62521 -22.23843 -21.86905 -20.37334 -19.07487 -16.96153 -16.18067 -15.43613 -15.08454 -14.71340 -14.68998 -14.33011 -13.88748 -13.38877 -12.95253 -12.83771 -12.66233 -12.51465 -12.06806 -11.71040 -11.67083 -11.56596 -10.94143 -10.89365 -10.76565 -10.52863 -10.25375 -10.02788 -9.80834 -9.62495 -9.22952 -9.14894 -8.66350 -8.24036 -7.65224 -6.17754 -4.17125 2.05566 2.08606 3.24059 3.30307 3.33901 4.33487 4.41933 4.48542 5.10006 5.30716 5.32138 5.34170 5.45680 5.54228 5.60641 5.63685 5.75574 5.81082 5.83696 5.94365 6.06750 6.16434 6.18333 6.29536 6.30586 6.33669 6.57264 6.63161 6.73481 6.76502 6.85332 7.03661 7.16359 7.22692 7.34460 7.52320 7.60370 7.74953 8.39580 8.85802 9.43798 10.94315 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.011030 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.183071 B = 2537.958210 C = 3738.614124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.140 4.140 5 C -0.041 4.041 6 C 0.047 3.953 7 H 0.047 0.953 8 C -0.500 4.500 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.894 5.894 12 Si 0.865 3.135 13 H -0.268 1.268 14 H -0.291 1.291 15 H -0.263 1.263 16 C -0.092 4.092 17 H 0.076 0.924 18 C -0.135 4.135 19 C 0.043 3.957 20 O -0.390 6.390 21 C 0.047 3.953 22 C -0.102 4.102 23 C -0.122 4.122 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 1.446 -8.588 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.158 4.158 5 C -0.042 4.042 6 C 0.028 3.972 7 H 0.065 0.935 8 C -0.537 4.537 9 H 0.096 0.904 10 C -0.125 4.125 11 N -0.531 5.531 12 Si 0.693 3.307 13 H -0.193 1.193 14 H -0.218 1.218 15 H -0.188 1.188 16 C -0.111 4.111 17 H 0.094 0.906 18 C -0.173 4.173 19 C -0.033 4.033 20 O -0.309 6.309 21 C -0.030 4.030 22 C -0.120 4.120 23 C -0.140 4.140 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.823 1.423 -8.597 10.481 hybrid contribution -0.276 1.079 0.636 1.282 sum -6.099 2.501 -7.961 10.336 Atomic orbital electron populations 1.20671 0.92209 1.01925 1.01345 1.19653 0.95208 0.93429 1.03737 1.20825 0.94198 0.96834 1.01998 1.21043 0.93955 0.97884 1.02965 1.20720 0.98358 0.92058 0.93037 1.18449 0.87114 0.97094 0.94530 0.93494 1.20806 1.42864 0.97919 0.92097 0.90438 1.24987 0.94057 0.98044 0.95461 1.69887 1.43674 1.37004 1.02499 0.87089 0.79841 0.85856 0.77897 1.19341 1.21787 1.18786 1.22607 0.94744 0.99905 0.93848 0.90577 1.22789 0.96532 1.03632 0.94338 1.23222 0.87188 1.00409 0.92519 1.88767 1.19086 1.86522 1.36575 1.23716 0.91957 0.97747 0.89542 1.20913 0.93143 0.98289 0.99693 1.20928 0.94494 0.96733 1.01846 0.92088 0.92186 0.92338 0.87349 0.87345 0.92523 0.90105 0.90844 0.93235 0.90748 0.89729 0.92728 0.86316 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.12 -2.00 5.88 -104.62 -0.62 -2.61 16 3 C -0.12 -2.12 9.70 -39.58 -0.38 -2.50 16 4 C -0.14 -2.77 8.16 -39.58 -0.32 -3.10 16 5 C -0.04 -0.85 3.89 -104.63 -0.41 -1.26 16 6 C 0.05 1.02 1.01 -92.93 -0.09 0.93 16 7 H 0.05 1.06 5.39 -51.93 -0.28 0.78 16 8 C -0.50 -12.96 7.92 -34.44 -0.27 -13.23 16 9 H 0.08 2.19 8.05 -52.49 -0.42 1.76 16 10 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 11 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 12 Si 0.87 20.98 24.78 -169.99 -4.21 16.77 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.26 -5.96 5.96 56.52 0.34 -5.62 16 16 C -0.09 -1.76 2.44 -88.61 -0.22 -1.97 16 17 H 0.08 1.46 7.12 -51.93 -0.37 1.09 16 18 C -0.14 -2.43 5.96 -25.20 -0.15 -2.58 16 19 C 0.04 0.69 7.70 37.73 0.29 0.98 16 20 O -0.39 -6.95 11.52 -35.23 -0.41 -7.35 16 21 C 0.05 0.82 6.76 38.21 0.26 1.07 16 22 C -0.10 -2.00 8.87 -39.59 -0.35 -2.35 16 23 C -0.12 -2.11 9.70 -39.58 -0.38 -2.50 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.11 2.10 6.78 -52.49 -0.36 1.74 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.08 1.54 7.81 -51.93 -0.41 1.13 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 36 H 0.12 2.28 7.34 -52.49 -0.39 1.89 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 295.73 15.07 4.46 4.46 Total: -1.00 -28.83 295.73 -7.41 -36.23 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.63 Total: 3.51 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.39 Total: -28.05 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.41 Total: -7.35 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.21 Total: 16.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.83 -7.41 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.799 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds