Wall clock time and date at job start Mon Mar 30 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 120.00324 * 2 1 4 4 C 1.38213 * 120.00106 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00050 * 359.96709 * 4 3 2 6 6 C 1.38218 * 119.99931 * 0.02562 * 5 4 3 7 7 C 1.38211 * 119.99933 * 179.73797 * 2 1 3 8 8 C 1.50703 * 119.99865 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47101 * 5.73776 * 8 7 2 10 10 C 1.50702 * 109.47189 * 125.74033 * 8 7 2 11 11 H 1.07994 * 120.00221 * 85.29547 * 10 8 7 12 12 C 1.37878 * 119.99484 * 265.29860 * 10 8 7 13 13 N 1.31514 * 120.00357 * 5.95987 * 12 10 8 14 14 Si 1.86806 * 119.99968 * 185.96499 * 12 10 8 15 15 H 1.48501 * 109.46710 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47278 * 119.99647 * 14 12 10 17 17 H 1.48498 * 109.47235 * 240.00118 * 14 12 10 18 18 C 1.53001 * 109.46987 * 245.73576 * 8 7 2 19 19 H 1.09003 * 110.75246 * 300.42730 * 18 8 7 20 20 C 1.55309 * 110.84816 * 64.12600 * 18 8 7 21 21 C 1.54940 * 100.94060 * 152.32029 * 20 18 8 22 22 O 1.43650 * 105.14186 * 323.55541 * 21 20 18 23 23 C 1.43244 * 109.96676 * 24.43018 * 22 21 20 24 24 H 1.09000 * 109.47240 * 95.46577 * 1 2 3 25 25 H 1.09004 * 109.46790 * 335.46627 * 1 2 3 26 26 H 1.09000 * 109.46992 * 215.46907 * 1 2 3 27 27 H 1.08000 * 119.99984 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.99736 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.99871 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99934 * 179.97438 * 6 5 4 31 31 H 0.97004 * 119.99986 * 180.02562 * 13 12 10 32 32 H 1.08995 * 111.12250 * 270.24442 * 20 18 8 33 33 H 1.09003 * 111.12014 * 34.40345 * 20 18 8 34 34 H 1.09001 * 110.31244 * 204.64353 * 21 20 18 35 35 H 1.09002 * 110.39551 * 82.51856 * 21 20 18 36 36 H 1.09007 * 109.82556 * 238.77758 * 23 22 21 37 37 H 1.08993 * 109.90597 * 117.84875 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 -0.0002 7 6 2.1980 -1.1969 0.0055 8 6 1.4445 -2.5020 0.0120 9 1 0.3773 -2.3059 -0.0912 10 6 1.9115 -3.3576 -1.1373 11 1 2.7834 -3.9848 -1.0242 12 6 1.2257 -3.3395 -2.3333 13 7 0.2366 -2.4912 -2.5114 14 14 1.7014 -4.5200 -3.7007 15 1 2.8378 -5.3643 -3.2525 16 1 0.5416 -5.3858 -4.0329 17 1 2.1034 -3.7478 -4.9037 18 6 1.7033 -3.2338 1.3305 19 1 2.7671 -3.4340 1.4587 20 6 1.1399 -2.4256 2.5311 21 6 0.8445 -3.5642 3.5395 22 8 0.3834 -4.6642 2.7389 23 6 0.8856 -4.5412 1.4030 24 1 -0.3634 -0.0979 -1.0230 25 1 -0.3633 0.9349 0.4267 26 1 -0.3633 -0.8370 0.5963 27 1 1.6584 2.1326 -0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.3517 -0.0001 -0.0012 30 1 4.1205 -2.1324 -0.0005 31 1 -0.2461 -2.4788 -3.3527 32 1 1.8861 -1.7356 2.9250 33 1 0.2266 -1.8982 2.2555 34 1 0.0697 -3.2564 4.2415 35 1 1.7520 -3.8412 4.0761 36 1 0.0551 -4.4975 0.6983 37 1 1.5257 -5.3914 1.1675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:58 Heat of formation + Delta-G solvation = -40.268301 kcal Electronic energy + Delta-G solvation = -18426.366740 eV Core-core repulsion = 15746.647956 eV Total energy + Delta-G solvation = -2679.718784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25578 -38.10997 -34.32242 -32.00839 -31.71307 -30.06905 -28.83240 -26.53354 -25.67750 -23.51838 -21.61553 -21.38891 -20.13796 -19.01621 -16.59391 -16.08284 -15.39239 -15.26582 -14.49876 -14.43095 -13.99863 -13.71788 -13.08845 -12.79507 -12.41218 -12.35943 -12.21475 -11.66093 -11.41872 -11.37743 -11.22843 -10.98242 -10.88940 -10.61114 -10.49207 -10.24221 -10.16132 -9.81512 -9.31560 -9.04423 -8.82030 -8.53199 -7.88411 -7.47630 -6.12326 -4.15198 2.27223 2.36138 3.24967 3.34013 3.36851 4.35437 4.53303 4.70335 5.16604 5.31406 5.47054 5.59926 5.63190 5.70480 5.79513 5.87990 6.00593 6.04663 6.17440 6.23004 6.32503 6.42219 6.45154 6.57560 6.62752 6.69481 6.75498 6.81168 6.97214 7.07496 7.17949 7.28544 7.41082 7.57418 7.64028 7.75046 7.89767 8.01235 8.29375 8.90726 9.48803 10.95833 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.012377 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.969764 B = 2261.668556 C = 3523.557802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.112 4.112 7 C -0.018 4.018 8 C 0.072 3.928 9 H 0.076 0.924 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.070 3.930 13 N -0.880 5.880 14 Si 0.888 3.112 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.285 1.285 18 C -0.101 4.101 19 H 0.066 0.934 20 C -0.154 4.154 21 C 0.052 3.948 22 O -0.399 6.399 23 C 0.066 3.934 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 3.375 6.920 8.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.169 4.169 5 C -0.157 4.157 6 C -0.130 4.130 7 C -0.018 4.018 8 C 0.053 3.947 9 H 0.094 0.906 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.517 5.517 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.211 1.211 18 C -0.119 4.119 19 H 0.085 0.915 20 C -0.192 4.192 21 C -0.025 4.025 22 O -0.319 6.319 23 C -0.010 4.010 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.897 3.257 6.845 7.814 hybrid contribution 0.611 -0.278 -1.145 1.327 sum 2.508 2.979 5.700 6.903 Atomic orbital electron populations 1.20738 0.91906 1.00126 1.03316 1.19779 0.95891 0.92617 1.00263 1.20846 0.94089 0.97006 1.02996 1.20760 0.94260 0.97083 1.04792 1.20947 0.98623 0.93108 1.02980 1.20929 0.94583 0.96908 1.00545 1.20503 0.93374 0.95996 0.91937 1.18128 0.98275 0.88117 0.90166 0.90553 1.20980 1.12988 1.24216 0.96609 0.92506 1.24941 0.94893 0.95157 0.98317 1.69927 1.21612 1.34909 1.25223 0.86599 0.78547 0.81162 0.82126 1.19688 1.20883 1.21136 1.22783 0.98752 0.94243 0.96159 0.91529 1.23358 1.01751 0.97807 0.96239 1.23269 0.98334 0.86824 0.94047 1.88316 1.74292 1.46599 1.22722 1.23106 0.98124 0.97466 0.82283 0.90115 0.93998 0.91676 0.87726 0.87844 0.87786 0.86960 0.92888 0.90999 0.90632 0.90940 0.93234 0.90448 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.16 36.00 0.33 -1.67 16 2 C -0.09 -1.75 5.88 -104.63 -0.62 -2.36 16 3 C -0.13 -2.43 9.68 -39.58 -0.38 -2.81 16 4 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 5 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 6 C -0.11 -2.29 8.84 -39.58 -0.35 -2.64 16 7 C -0.02 -0.38 4.26 -104.62 -0.45 -0.82 16 8 C 0.07 1.61 1.13 -92.92 -0.10 1.50 16 9 H 0.08 1.87 4.96 -51.93 -0.26 1.61 16 10 C -0.51 -12.80 7.12 -34.44 -0.25 -13.05 16 11 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 12 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 13 N -0.88 -23.61 12.86 55.43 0.71 -22.90 16 14 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.10 -1.97 2.38 -88.67 -0.21 -2.18 16 19 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 20 C -0.15 -2.62 6.10 -24.48 -0.15 -2.77 16 21 C 0.05 0.82 7.78 38.18 0.30 1.12 16 22 O -0.40 -7.62 11.36 -35.23 -0.40 -8.02 16 23 C 0.07 1.31 6.85 37.88 0.26 1.57 16 24 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.04 0.67 8.05 -51.93 -0.42 0.26 16 26 H 0.06 1.26 5.21 -51.93 -0.27 0.98 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.11 2.26 7.82 -52.48 -0.41 1.85 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.32 6.74 -51.93 -0.35 0.97 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.67 7.80 -51.93 -0.40 1.26 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -26.87 299.26 -8.16 -35.03 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.45 Total: 4.22 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -2.51 Total: -28.37 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.71 Total: -22.90 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.40 Total: -8.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.87 -8.16 -35.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.239 kcal (2) G-P(sol) polarization free energy of solvation -26.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds