Wall clock time and date at job start Mon Mar 30 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 120.00324 * 2 1 4 4 C 1.38213 * 120.00106 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00050 * 359.96709 * 4 3 2 6 6 C 1.38218 * 119.99931 * 0.02562 * 5 4 3 7 7 C 1.38211 * 119.99933 * 179.73797 * 2 1 3 8 8 C 1.50703 * 119.99865 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47101 * 5.73776 * 8 7 2 10 10 C 1.50702 * 109.47189 * 125.74033 * 8 7 2 11 11 H 1.07994 * 120.00221 * 85.29547 * 10 8 7 12 12 C 1.37878 * 119.99484 * 265.29860 * 10 8 7 13 13 N 1.31514 * 120.00357 * 5.95987 * 12 10 8 14 14 Si 1.86806 * 119.99968 * 185.96499 * 12 10 8 15 15 H 1.48501 * 109.46710 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47278 * 119.99647 * 14 12 10 17 17 H 1.48498 * 109.47235 * 240.00118 * 14 12 10 18 18 C 1.53001 * 109.46987 * 245.73576 * 8 7 2 19 19 H 1.09003 * 110.75246 * 300.42730 * 18 8 7 20 20 C 1.55309 * 110.84816 * 64.12600 * 18 8 7 21 21 C 1.54940 * 100.94060 * 152.32029 * 20 18 8 22 22 O 1.43650 * 105.14186 * 323.55541 * 21 20 18 23 23 C 1.43244 * 109.96676 * 24.43018 * 22 21 20 24 24 H 1.09000 * 109.47240 * 95.46577 * 1 2 3 25 25 H 1.09004 * 109.46790 * 335.46627 * 1 2 3 26 26 H 1.09000 * 109.46992 * 215.46907 * 1 2 3 27 27 H 1.08000 * 119.99984 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.99736 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.99871 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99934 * 179.97438 * 6 5 4 31 31 H 0.97004 * 119.99986 * 180.02562 * 13 12 10 32 32 H 1.08995 * 111.12250 * 270.24442 * 20 18 8 33 33 H 1.09003 * 111.12014 * 34.40345 * 20 18 8 34 34 H 1.09001 * 110.31244 * 204.64353 * 21 20 18 35 35 H 1.09002 * 110.39551 * 82.51856 * 21 20 18 36 36 H 1.09007 * 109.82556 * 238.77758 * 23 22 21 37 37 H 1.08993 * 109.90597 * 117.84875 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 -0.0002 7 6 2.1980 -1.1969 0.0055 8 6 1.4445 -2.5020 0.0120 9 1 0.3773 -2.3059 -0.0912 10 6 1.9115 -3.3576 -1.1373 11 1 2.7834 -3.9848 -1.0242 12 6 1.2257 -3.3395 -2.3333 13 7 0.2366 -2.4912 -2.5114 14 14 1.7014 -4.5200 -3.7007 15 1 2.8378 -5.3643 -3.2525 16 1 0.5416 -5.3858 -4.0329 17 1 2.1034 -3.7478 -4.9037 18 6 1.7033 -3.2338 1.3305 19 1 2.7671 -3.4340 1.4587 20 6 1.1399 -2.4256 2.5311 21 6 0.8445 -3.5642 3.5395 22 8 0.3834 -4.6642 2.7389 23 6 0.8856 -4.5412 1.4030 24 1 -0.3634 -0.0979 -1.0230 25 1 -0.3633 0.9349 0.4267 26 1 -0.3633 -0.8370 0.5963 27 1 1.6584 2.1326 -0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.3517 -0.0001 -0.0012 30 1 4.1205 -2.1324 -0.0005 31 1 -0.2461 -2.4788 -3.3527 32 1 1.8861 -1.7356 2.9250 33 1 0.2266 -1.8982 2.2555 34 1 0.0697 -3.2564 4.2415 35 1 1.7520 -3.8412 4.0761 36 1 0.0551 -4.4975 0.6983 37 1 1.5257 -5.3914 1.1675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:58 Heat of formation + Delta-G solvation = -53.297659 kcal Electronic energy + Delta-G solvation = -18426.931735 eV Core-core repulsion = 15746.647956 eV Total energy + Delta-G solvation = -2680.283780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77895 -39.58201 -35.99959 -33.78549 -33.25238 -31.55825 -30.31859 -28.18228 -27.29712 -25.24783 -23.02540 -22.91896 -21.63055 -20.61833 -18.44588 -17.59583 -16.90660 -16.79804 -16.24541 -15.98695 -15.46944 -15.24513 -14.71092 -14.30491 -14.06926 -13.83183 -13.68511 -13.33301 -13.12253 -12.93340 -12.86758 -12.71220 -12.37011 -12.25351 -12.08090 -11.81249 -11.64219 -11.43092 -11.01242 -10.78298 -10.46383 -10.35391 -9.38026 -9.02431 -8.09091 -6.15561 0.77494 0.87285 1.38292 1.42748 1.50761 2.43550 3.09412 3.14877 3.27504 3.83138 4.04216 4.18367 4.24934 4.32288 4.42042 4.46281 4.50440 4.57792 4.76220 4.85079 4.87584 4.95092 4.98523 5.06534 5.09927 5.17714 5.21218 5.25700 5.35933 5.58233 5.63463 5.70073 5.79052 5.86302 6.01606 6.15869 6.18379 6.45545 6.52552 6.96328 7.49246 8.97699 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.012377 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.969764 B = 2261.668556 C = 3523.557802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.107 4.107 3 C -0.134 4.134 4 C -0.146 4.146 5 C -0.138 4.138 6 C -0.131 4.131 7 C -0.040 4.040 8 C 0.077 3.923 9 H 0.050 0.950 10 C -0.512 4.512 11 H 0.049 0.951 12 C 0.025 3.975 13 N -0.906 5.906 14 Si 0.937 3.063 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.289 1.289 18 C -0.099 4.099 19 H 0.067 0.933 20 C -0.144 4.144 21 C 0.050 3.950 22 O -0.412 6.412 23 C 0.072 3.928 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.258 0.742 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 4.648 8.048 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.152 4.152 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.040 4.040 8 C 0.058 3.942 9 H 0.068 0.932 10 C -0.550 4.550 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.544 5.544 14 Si 0.764 3.236 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.215 1.215 18 C -0.118 4.118 19 H 0.085 0.915 20 C -0.182 4.182 21 C -0.026 4.026 22 O -0.332 6.332 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.157 4.523 7.986 9.706 hybrid contribution 0.265 -0.620 -1.436 1.587 sum 3.422 3.903 6.550 8.357 Atomic orbital electron populations 1.20619 0.91680 1.01275 1.01565 1.19993 0.96374 0.93193 1.01142 1.21192 0.94886 0.97215 1.01872 1.21194 0.94088 0.98306 1.02808 1.21282 1.00178 0.92475 1.01608 1.21015 0.94302 0.97845 1.01781 1.20425 0.93990 0.95795 0.93805 1.17942 0.96739 0.88898 0.90607 0.93180 1.21243 1.12261 1.24068 0.97477 0.93259 1.25537 0.95280 0.96509 1.00214 1.70036 1.22669 1.36273 1.25432 0.85822 0.78252 0.79624 0.79865 1.19229 1.20816 1.21507 1.22673 0.98748 0.94308 0.96081 0.91469 1.23263 1.01533 0.98079 0.95296 1.23505 1.00155 0.85289 0.93636 1.88294 1.74665 1.47961 1.22313 1.22919 0.97106 0.97813 0.82570 0.92910 0.90996 0.92706 0.85129 0.84243 0.84938 0.87632 0.93255 0.89659 0.91424 0.88400 0.91236 0.93066 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.64 9.16 71.24 0.65 -2.99 16 2 C -0.11 -4.29 5.88 -19.87 -0.12 -4.41 16 3 C -0.13 -4.59 9.68 22.27 0.22 -4.38 16 4 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16 5 C -0.14 -4.66 10.05 22.27 0.22 -4.43 16 6 C -0.13 -5.27 8.84 22.27 0.20 -5.08 16 7 C -0.04 -1.71 4.26 -19.87 -0.08 -1.79 16 8 C 0.08 3.52 1.13 -12.28 -0.01 3.51 16 9 H 0.05 2.56 4.96 -2.39 -0.01 2.55 16 10 C -0.51 -26.35 7.12 25.60 0.18 -26.17 16 11 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 12 C 0.02 1.32 5.45 84.65 0.46 1.78 16 13 N -0.91 -50.17 12.86 21.45 0.28 -49.89 16 14 Si 0.94 42.97 29.54 68.60 2.03 44.99 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 18 C -0.10 -3.91 2.38 -9.53 -0.02 -3.94 16 19 H 0.07 2.62 7.86 -2.39 -0.02 2.60 16 20 C -0.14 -4.76 6.10 32.05 0.20 -4.56 16 21 C 0.05 1.49 7.78 72.65 0.56 2.05 16 22 O -0.41 -15.44 11.36 -148.98 -1.69 -17.13 16 23 C 0.07 2.91 6.85 72.45 0.50 3.40 16 24 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.23 8.05 -2.38 -0.02 2.21 16 26 H 0.05 2.17 5.21 -2.39 -0.01 2.16 16 27 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.11 4.25 7.82 -2.91 -0.02 4.23 16 31 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.07 2.33 6.74 -2.39 -0.02 2.32 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 2.31 7.80 -2.38 -0.02 2.29 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -58.08 299.26 4.83 -53.26 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.04 Total: 20.17 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 3.18 Total: -51.40 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.28 Total: -49.89 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.69 Total: -17.13 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -58.08 4.83 -53.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.038 kcal (2) G-P(sol) polarization free energy of solvation -58.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds