Wall clock time and date at job start Mon Mar 30 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99865 * 2 1 4 4 C 1.38212 * 119.99991 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.38220 * 120.00160 * 359.75209 * 5 4 3 7 7 C 1.38207 * 119.99946 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00149 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.47295 * 357.38285 * 8 7 2 10 10 C 1.50696 * 109.47691 * 117.38778 * 8 7 2 11 11 H 1.08001 * 120.00449 * 64.87714 * 10 8 7 12 12 C 1.37878 * 119.99870 * 244.60794 * 10 8 7 13 13 N 1.31519 * 120.00213 * 354.48535 * 12 10 8 14 14 Si 1.86804 * 120.00121 * 174.48102 * 12 10 8 15 15 H 1.48498 * 109.46762 * 90.00025 * 14 12 10 16 16 H 1.48499 * 109.47178 * 209.99921 * 14 12 10 17 17 H 1.48496 * 109.47051 * 330.00113 * 14 12 10 18 18 C 1.53000 * 109.46946 * 237.38571 * 8 7 2 19 19 H 1.09005 * 110.43909 * 296.43382 * 18 8 7 20 20 C 1.54815 * 110.49221 * 173.74493 * 18 8 7 21 21 C 1.54997 * 102.09290 * 220.44597 * 20 18 8 22 22 O 1.44378 * 103.49053 * 37.01702 * 21 20 18 23 23 C 1.43745 * 106.97703 * 319.94050 * 22 21 20 24 24 H 1.08990 * 109.47487 * 263.97949 * 1 2 3 25 25 H 1.09005 * 109.47034 * 23.98805 * 1 2 3 26 26 H 1.09000 * 109.46651 * 143.97862 * 1 2 3 27 27 H 1.07999 * 119.99897 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.99870 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99957 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.99911 * 180.27511 * 6 5 4 31 31 H 0.96991 * 120.00154 * 179.97438 * 13 12 10 32 32 H 1.09005 * 110.90090 * 338.63749 * 20 18 8 33 33 H 1.08994 * 110.90867 * 102.24515 * 20 18 8 34 34 H 1.09005 * 110.61487 * 278.51946 * 21 20 18 35 35 H 1.08998 * 110.75441 * 155.58805 * 21 20 18 36 36 H 1.09000 * 109.87697 * 267.08715 * 23 22 21 37 37 H 1.09001 * 109.99958 * 146.00902 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0073 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3739 -2.3034 0.0470 10 6 1.7599 -3.2642 -1.2607 11 1 2.7638 -3.6195 -1.4403 12 6 0.7654 -3.5129 -2.1827 13 7 -0.4786 -3.1814 -1.9137 14 14 1.1848 -4.3205 -3.8141 15 1 1.0831 -5.7956 -3.6766 16 1 0.2353 -3.8538 -4.8561 17 1 2.5694 -3.9541 -4.2062 18 6 1.8625 -3.3321 1.2159 19 1 2.9189 -3.5935 1.1534 20 6 0.9916 -4.6073 1.3267 21 6 0.7417 -4.6981 2.8537 22 8 0.5958 -3.3186 3.2538 23 6 1.5736 -2.5630 2.5196 24 1 -0.3634 -0.1078 1.0219 25 1 -0.3633 0.9390 -0.4178 26 1 -0.3633 -0.8312 -0.6044 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1327 0.0010 29 1 5.3518 0.0001 0.0024 30 1 4.1207 -2.1322 0.0126 31 1 -1.1782 -3.3559 -2.5625 32 1 0.0532 -4.4855 0.7857 33 1 1.5349 -5.4817 0.9688 34 1 1.5946 -5.1552 3.3557 35 1 -0.1703 -5.2571 3.0633 36 1 2.4878 -2.4710 3.1061 37 1 1.1817 -1.5729 2.2867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:00 Heat of formation + Delta-G solvation = -39.311203 kcal Electronic energy + Delta-G solvation = -18454.448619 eV Core-core repulsion = 15774.771338 eV Total energy + Delta-G solvation = -2679.677281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.29996 -38.08252 -34.31294 -31.95098 -31.74160 -30.25046 -28.33929 -26.74460 -25.82942 -23.25862 -22.05107 -21.26288 -20.01048 -18.89063 -16.71169 -15.77280 -15.41727 -15.27040 -14.61482 -14.37483 -14.22280 -13.82490 -13.06791 -12.78150 -12.40449 -12.29905 -12.11695 -11.69975 -11.40948 -11.25615 -11.05145 -10.99394 -10.76204 -10.52957 -10.47253 -10.30939 -10.10076 -9.77283 -9.41468 -8.97656 -8.85653 -8.54606 -7.97430 -7.57320 -6.13026 -4.13791 2.17521 2.26875 3.24423 3.32427 3.36376 4.34512 4.60472 4.63702 5.18214 5.51140 5.57162 5.61135 5.69742 5.73637 5.77139 5.83845 5.98106 6.07264 6.18711 6.28739 6.31806 6.43681 6.44253 6.52466 6.55306 6.70950 6.86261 6.96296 7.00323 7.11726 7.20505 7.27957 7.38043 7.45907 7.62341 7.75789 7.85482 7.98786 8.29851 8.94805 9.48282 10.95025 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.011944 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.310814 B = 2343.795559 C = 3480.734823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.150 4.150 5 C -0.134 4.134 6 C -0.117 4.117 7 C -0.028 4.028 8 C 0.061 3.939 9 H 0.092 0.908 10 C -0.501 4.501 11 H 0.054 0.946 12 C 0.071 3.929 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.101 4.101 19 H 0.061 0.939 20 C -0.129 4.129 21 C 0.041 3.959 22 O -0.388 6.388 23 C 0.047 3.953 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 2.385 5.129 6.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.168 4.168 5 C -0.152 4.152 6 C -0.136 4.136 7 C -0.029 4.029 8 C 0.043 3.957 9 H 0.110 0.890 10 C -0.539 4.539 11 H 0.072 0.928 12 C -0.132 4.132 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.120 4.120 19 H 0.080 0.920 20 C -0.167 4.167 21 C -0.035 4.035 22 O -0.307 6.307 23 C -0.029 4.029 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.239 2.466 5.194 6.599 hybrid contribution 0.606 -0.413 -1.236 1.437 sum 3.845 2.053 3.958 5.887 Atomic orbital electron populations 1.20926 0.91702 1.03138 1.02027 1.19849 0.96081 0.92617 1.00678 1.20897 0.94107 0.97070 1.02448 1.20792 0.94257 0.97176 1.04608 1.20970 0.98725 0.93058 1.02472 1.20949 0.94505 0.97015 1.01083 1.20641 0.93515 0.96499 0.92239 1.18362 0.98530 0.87085 0.91759 0.88970 1.20931 0.95478 1.34242 1.03228 0.92792 1.24918 0.94999 0.95111 0.98131 1.69833 0.99708 1.47624 1.35343 0.86652 0.78436 0.79474 0.83838 1.20662 1.21163 1.19885 1.22645 0.98957 0.95473 0.94956 0.92010 1.22956 1.02011 0.97868 0.93854 1.23587 1.00242 0.84033 0.95657 1.88768 1.57751 1.18566 1.65593 1.23374 0.90960 0.96352 0.92243 0.92416 0.93411 0.88053 0.87498 0.87649 0.87614 0.86960 0.92679 0.89253 0.91427 0.93555 0.90070 0.94176 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.17 36.01 0.33 -2.04 16 2 C -0.09 -1.87 5.68 -104.62 -0.59 -2.47 16 3 C -0.13 -2.30 9.68 -39.58 -0.38 -2.68 16 4 C -0.15 -2.56 10.05 -39.59 -0.40 -2.96 16 5 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 6 C -0.12 -2.33 8.91 -39.58 -0.35 -2.68 16 7 C -0.03 -0.61 3.63 -104.63 -0.38 -0.99 16 8 C 0.06 1.39 1.41 -92.93 -0.13 1.26 16 9 H 0.09 2.30 4.38 -51.93 -0.23 2.08 16 10 C -0.50 -12.65 7.54 -34.44 -0.26 -12.91 16 11 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 12 C 0.07 1.83 5.45 -17.82 -0.10 1.74 16 13 N -0.89 -23.56 12.38 55.43 0.69 -22.87 16 14 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.10 -2.05 2.31 -89.09 -0.21 -2.26 16 19 H 0.06 1.22 7.43 -51.93 -0.39 0.84 16 20 C -0.13 -2.52 6.24 -24.72 -0.15 -2.68 16 21 C 0.04 0.71 7.72 38.21 0.29 1.00 16 22 O -0.39 -7.63 11.52 -35.23 -0.41 -8.03 16 23 C 0.05 0.91 6.97 37.73 0.26 1.17 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.82 8.05 -51.93 -0.42 0.40 16 26 H 0.10 2.30 6.26 -51.93 -0.32 1.97 16 27 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.11 2.17 7.49 -52.49 -0.39 1.77 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.09 1.99 7.83 -51.93 -0.41 1.58 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.60 6.85 -51.93 -0.36 1.24 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -26.65 298.83 -8.14 -34.79 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.44 Total: 5.41 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -2.46 Total: -29.26 kcal Atomic # 7 Polarization: -23.56 SS G_CDS: 0.69 Total: -22.87 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.41 Total: -8.03 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.65 -8.14 -34.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.517 kcal (2) G-P(sol) polarization free energy of solvation -26.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds