Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99865 * 2 1 4 4 C 1.38212 * 119.99991 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.38220 * 120.00160 * 359.75209 * 5 4 3 7 7 C 1.38207 * 119.99946 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00149 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.47295 * 357.38285 * 8 7 2 10 10 C 1.50696 * 109.47691 * 117.38778 * 8 7 2 11 11 H 1.08001 * 120.00449 * 64.87714 * 10 8 7 12 12 C 1.37878 * 119.99870 * 244.60794 * 10 8 7 13 13 N 1.31519 * 120.00213 * 354.48535 * 12 10 8 14 14 Si 1.86804 * 120.00121 * 174.48102 * 12 10 8 15 15 H 1.48498 * 109.46762 * 90.00025 * 14 12 10 16 16 H 1.48499 * 109.47178 * 209.99921 * 14 12 10 17 17 H 1.48496 * 109.47051 * 330.00113 * 14 12 10 18 18 C 1.53000 * 109.46946 * 237.38571 * 8 7 2 19 19 H 1.09005 * 110.43909 * 296.43382 * 18 8 7 20 20 C 1.54815 * 110.49221 * 173.74493 * 18 8 7 21 21 C 1.54997 * 102.09290 * 220.44597 * 20 18 8 22 22 O 1.44378 * 103.49053 * 37.01702 * 21 20 18 23 23 C 1.43745 * 106.97703 * 319.94050 * 22 21 20 24 24 H 1.08990 * 109.47487 * 263.97949 * 1 2 3 25 25 H 1.09005 * 109.47034 * 23.98805 * 1 2 3 26 26 H 1.09000 * 109.46651 * 143.97862 * 1 2 3 27 27 H 1.07999 * 119.99897 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.99870 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99957 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.99911 * 180.27511 * 6 5 4 31 31 H 0.96991 * 120.00154 * 179.97438 * 13 12 10 32 32 H 1.09005 * 110.90090 * 338.63749 * 20 18 8 33 33 H 1.08994 * 110.90867 * 102.24515 * 20 18 8 34 34 H 1.09005 * 110.61487 * 278.51946 * 21 20 18 35 35 H 1.08998 * 110.75441 * 155.58805 * 21 20 18 36 36 H 1.09000 * 109.87697 * 267.08715 * 23 22 21 37 37 H 1.09001 * 109.99958 * 146.00902 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0073 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3739 -2.3034 0.0470 10 6 1.7599 -3.2642 -1.2607 11 1 2.7638 -3.6195 -1.4403 12 6 0.7654 -3.5129 -2.1827 13 7 -0.4786 -3.1814 -1.9137 14 14 1.1848 -4.3205 -3.8141 15 1 1.0831 -5.7956 -3.6766 16 1 0.2353 -3.8538 -4.8561 17 1 2.5694 -3.9541 -4.2062 18 6 1.8625 -3.3321 1.2159 19 1 2.9189 -3.5935 1.1534 20 6 0.9916 -4.6073 1.3267 21 6 0.7417 -4.6981 2.8537 22 8 0.5958 -3.3186 3.2538 23 6 1.5736 -2.5630 2.5196 24 1 -0.3634 -0.1078 1.0219 25 1 -0.3633 0.9390 -0.4178 26 1 -0.3633 -0.8312 -0.6044 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1327 0.0010 29 1 5.3518 0.0001 0.0024 30 1 4.1207 -2.1322 0.0126 31 1 -1.1782 -3.3559 -2.5625 32 1 0.0532 -4.4855 0.7857 33 1 1.5349 -5.4817 0.9688 34 1 1.5946 -5.1552 3.3557 35 1 -0.1703 -5.2571 3.0633 36 1 2.4878 -2.4710 3.1061 37 1 1.1817 -1.5729 2.2867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = -52.251688 kcal Electronic energy + Delta-G solvation = -18455.009761 eV Core-core repulsion = 15774.771338 eV Total energy + Delta-G solvation = -2680.238423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83393 -39.55998 -36.00116 -33.65669 -33.36198 -31.76055 -29.81617 -28.46817 -27.39751 -25.00581 -23.54101 -22.76499 -21.49349 -20.50537 -18.56496 -17.26576 -16.98495 -16.82364 -16.33056 -15.96202 -15.69724 -15.36379 -14.63747 -14.27154 -14.15523 -13.74520 -13.65996 -13.38213 -12.93833 -12.92434 -12.80347 -12.66540 -12.34153 -12.20628 -12.10216 -11.82249 -11.70087 -11.41248 -11.04017 -10.72627 -10.50855 -10.40185 -9.43079 -9.09958 -8.08153 -6.13564 0.71566 0.81106 1.39136 1.42581 1.50095 2.43741 3.08334 3.16006 3.28486 3.97120 4.08769 4.23293 4.24579 4.28438 4.39199 4.42750 4.50066 4.58337 4.71291 4.82829 4.87226 4.91427 4.94119 4.97106 5.05490 5.20542 5.30660 5.35279 5.45382 5.54892 5.67034 5.71888 5.76630 5.83739 5.93594 6.09153 6.18582 6.42687 6.48771 7.00889 7.49518 8.98317 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.011944 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.310814 B = 2343.795559 C = 3480.734823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.129 4.129 4 C -0.144 4.144 5 C -0.132 4.132 6 C -0.133 4.133 7 C -0.054 4.054 8 C 0.064 3.936 9 H 0.064 0.936 10 C -0.506 4.506 11 H 0.046 0.954 12 C 0.028 3.972 13 N -0.912 5.912 14 Si 0.938 3.062 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.100 4.100 19 H 0.066 0.934 20 C -0.129 4.129 21 C 0.047 3.953 22 O -0.404 6.404 23 C 0.056 3.944 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 3.324 5.779 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.116 4.116 3 C -0.147 4.147 4 C -0.161 4.161 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.054 4.054 8 C 0.046 3.954 9 H 0.082 0.918 10 C -0.544 4.544 11 H 0.064 0.936 12 C -0.172 4.172 13 N -0.551 5.551 14 Si 0.765 3.235 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.119 4.119 19 H 0.084 0.916 20 C -0.167 4.167 21 C -0.029 4.029 22 O -0.324 6.324 23 C -0.021 4.021 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.946 3.398 5.849 8.380 hybrid contribution 0.126 -0.653 -1.411 1.559 sum 5.072 2.746 4.438 7.277 Atomic orbital electron populations 1.20794 0.91941 1.02578 1.01657 1.20033 0.96272 0.93407 1.01846 1.21215 0.94984 0.97096 1.01396 1.21239 0.93957 0.98511 1.02443 1.21329 1.00373 0.92335 1.00941 1.21037 0.93956 0.98138 1.01950 1.20555 0.94350 0.96093 0.94411 1.18180 0.97230 0.88242 0.91752 0.91771 1.21161 0.94819 1.34091 1.04295 0.93615 1.25498 0.95047 0.96048 1.00600 1.69961 1.00235 1.48984 1.35911 0.85872 0.77849 0.78907 0.80905 1.20133 1.21381 1.19940 1.22559 0.99098 0.95556 0.94735 0.91573 1.22878 1.00211 0.97941 0.95666 1.23709 1.02388 0.83208 0.93627 1.88745 1.58174 1.19855 1.65599 1.23257 0.91495 0.95538 0.91806 0.92069 0.91390 0.91718 0.84960 0.83933 0.84520 0.87247 0.93055 0.92797 0.90707 0.90785 0.88269 0.92239 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 9.17 71.24 0.65 -3.85 16 2 C -0.12 -4.65 5.68 -19.87 -0.11 -4.76 16 3 C -0.13 -4.35 9.68 22.27 0.22 -4.13 16 4 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 5 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 6 C -0.13 -5.13 8.91 22.27 0.20 -4.94 16 7 C -0.05 -2.31 3.63 -19.87 -0.07 -2.38 16 8 C 0.06 3.02 1.41 -12.29 -0.02 3.01 16 9 H 0.06 3.37 4.38 -2.39 -0.01 3.36 16 10 C -0.51 -26.18 7.54 25.60 0.19 -25.99 16 11 H 0.05 2.38 7.82 -2.91 -0.02 2.36 16 12 C 0.03 1.46 5.45 84.65 0.46 1.93 16 13 N -0.91 -50.36 12.38 21.45 0.27 -50.10 16 14 Si 0.94 42.76 29.54 68.60 2.03 44.79 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 C -0.10 -4.10 2.31 -9.80 -0.02 -4.13 16 19 H 0.07 2.61 7.43 -2.38 -0.02 2.59 16 20 C -0.13 -5.09 6.24 31.90 0.20 -4.89 16 21 C 0.05 1.53 7.72 72.67 0.56 2.09 16 22 O -0.40 -15.56 11.52 -148.98 -1.72 -17.27 16 23 C 0.06 2.11 6.97 72.35 0.50 2.61 16 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.32 8.05 -2.38 -0.02 2.30 16 26 H 0.06 3.07 6.26 -2.39 -0.01 3.06 16 27 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.11 4.17 7.49 -2.91 -0.02 4.15 16 31 H 0.26 13.88 8.31 -92.72 -0.77 13.11 16 32 H 0.05 2.50 7.83 -2.38 -0.02 2.48 16 33 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.72 6.85 -2.39 -0.02 2.70 16 Total: -1.00 -58.17 298.83 4.82 -53.35 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 1.04 Total: 22.83 kcal Atomic # 6 Polarization: -56.81 SS G_CDS: 3.21 Total: -53.60 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.27 Total: -50.10 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.72 Total: -17.27 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -58.17 4.82 -53.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.097 kcal (2) G-P(sol) polarization free energy of solvation -58.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds