Wall clock time and date at job start Mon Mar 30 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 119.99989 * 2 1 4 4 C 1.38212 * 119.99910 * 180.27439 * 3 2 1 5 5 C 1.38263 * 119.99775 * 359.50884 * 4 3 2 6 6 C 1.38212 * 119.99982 * 0.27661 * 5 4 3 7 7 C 1.38216 * 119.99762 * 179.82354 * 2 1 3 8 8 C 1.50694 * 120.00017 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47558 * 31.50850 * 8 7 2 10 10 C 1.50696 * 109.47113 * 271.50419 * 8 7 2 11 11 H 1.08000 * 120.00254 * 114.85133 * 10 8 7 12 12 C 1.37875 * 120.00090 * 294.85058 * 10 8 7 13 13 N 1.31513 * 120.00139 * 5.41756 * 12 10 8 14 14 Si 1.86808 * 120.00146 * 185.41158 * 12 10 8 15 15 H 1.48499 * 109.46677 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46762 * 120.00283 * 14 12 10 17 17 H 1.48497 * 109.47188 * 239.99987 * 14 12 10 18 18 C 1.53003 * 109.47248 * 151.50835 * 8 7 2 19 19 H 1.09001 * 110.43848 * 65.01491 * 18 8 7 20 20 C 1.54814 * 110.48463 * 302.32853 * 18 8 7 21 21 C 1.54994 * 102.09387 * 220.44140 * 20 18 8 22 22 O 1.44376 * 103.48869 * 37.02813 * 21 20 18 23 23 C 1.43748 * 106.97577 * 319.93456 * 22 21 20 24 24 H 1.08994 * 109.47150 * 272.25484 * 1 2 3 25 25 H 1.08996 * 109.47105 * 32.25364 * 1 2 3 26 26 H 1.08999 * 109.46832 * 152.25161 * 1 2 3 27 27 H 1.08000 * 119.99925 * 0.06174 * 3 2 1 28 28 H 1.08004 * 120.00289 * 179.78495 * 4 3 2 29 29 H 1.07997 * 119.99612 * 180.25623 * 5 4 3 30 30 H 1.08000 * 119.99814 * 179.97438 * 6 5 4 31 31 H 0.97001 * 120.00298 * 179.97438 * 13 12 10 32 32 H 1.09000 * 110.90808 * 338.64605 * 20 18 8 33 33 H 1.09001 * 110.90571 * 102.24272 * 20 18 8 34 34 H 1.08995 * 110.61884 * 278.52441 * 21 20 18 35 35 H 1.09000 * 110.75050 * 155.58922 * 21 20 18 36 36 H 1.08993 * 109.88417 * 267.09396 * 23 22 21 37 37 H 1.09003 * 110.00374 * 146.01042 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0057 5 6 4.2717 -0.0001 -0.0012 6 6 3.5806 -1.1970 0.0033 7 6 2.1981 -1.1970 0.0037 8 6 1.4446 -2.5020 0.0071 9 1 0.5043 -2.3802 -0.5307 10 6 1.1606 -2.9143 1.4285 11 1 0.1418 -2.9610 1.7840 12 6 2.2013 -3.2321 2.2752 13 7 3.4447 -3.0735 1.8772 14 14 1.8452 -3.8877 3.9878 15 1 0.3765 -3.9731 4.1896 16 1 2.4441 -5.2385 4.1350 17 1 2.4321 -2.9731 4.9999 18 6 2.2877 -3.5796 -0.6776 19 1 3.1925 -3.7774 -0.1028 20 6 2.6429 -3.1527 -2.1227 21 6 2.4776 -4.4813 -2.9037 22 8 1.3412 -5.1059 -2.2690 23 6 1.4688 -4.8728 -0.8563 24 1 -0.3633 0.0404 1.0268 25 1 -0.3633 0.8691 -0.5484 26 1 -0.3633 -0.9095 -0.4785 27 1 1.6583 2.1326 0.0010 28 1 4.1205 2.1326 -0.0092 29 1 5.3517 -0.0001 -0.0015 30 1 4.1206 -2.1323 0.0064 31 1 4.1769 -3.2967 2.4730 32 1 1.9465 -2.3977 -2.4876 33 1 3.6701 -2.7927 -2.1806 34 1 3.3667 -5.1027 -2.7965 35 1 2.2709 -4.2874 -3.9562 36 1 1.9889 -5.7084 -0.3882 37 1 0.4827 -4.7520 -0.4078 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:02 Heat of formation + Delta-G solvation = -29.463825 kcal Electronic energy + Delta-G solvation = -18693.837507 eV Core-core repulsion = 16014.587240 eV Total energy + Delta-G solvation = -2679.250267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19488 -37.88979 -34.41101 -31.94002 -31.46503 -29.56582 -28.64355 -26.52238 -25.81825 -23.29550 -21.80722 -21.06459 -19.78273 -18.98885 -16.30003 -16.03056 -15.31651 -14.93096 -14.72578 -14.21656 -13.99360 -13.48419 -13.20311 -12.61848 -12.36003 -12.08488 -11.98218 -11.64609 -11.49512 -11.21982 -11.04580 -10.86202 -10.67285 -10.61443 -10.27348 -10.09517 -9.94359 -9.68418 -9.32527 -8.94740 -8.78856 -8.50025 -7.62438 -7.34627 -6.04583 -4.21964 2.48328 2.61383 3.22238 3.31784 3.34853 4.33120 4.74075 4.94769 5.15161 5.58013 5.65996 5.75034 5.77378 5.86170 5.96402 6.07758 6.11407 6.23015 6.33590 6.35834 6.43785 6.51064 6.58471 6.65627 6.72597 6.87970 6.92152 7.00867 7.18323 7.24087 7.37056 7.46475 7.56961 7.67960 7.82381 7.85943 8.13638 8.18781 8.28289 8.78916 9.44835 10.87223 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.013038 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.180666 B = 2147.027188 C = 3222.577998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.142 4.142 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.062 4.062 7 C -0.022 4.022 8 C 0.084 3.916 9 H 0.036 0.964 10 C -0.504 4.504 11 H 0.059 0.941 12 C 0.069 3.931 13 N -0.876 5.876 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.285 1.285 18 C -0.113 4.113 19 H 0.118 0.882 20 C -0.151 4.151 21 C 0.047 3.953 22 O -0.396 6.396 23 C 0.061 3.939 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 2.241 -5.129 5.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.161 4.161 4 C -0.169 4.169 5 C -0.169 4.169 6 C -0.080 4.080 7 C -0.022 4.022 8 C 0.065 3.935 9 H 0.054 0.946 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.133 4.133 13 N -0.513 5.513 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.211 1.211 18 C -0.132 4.132 19 H 0.136 0.864 20 C -0.189 4.189 21 C -0.030 4.030 22 O -0.316 6.316 23 C -0.016 4.016 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.157 0.843 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.159 2.084 -5.139 5.548 hybrid contribution 0.282 -0.025 1.409 1.437 sum 0.441 2.058 -3.731 4.284 Atomic orbital electron populations 1.20688 0.92706 1.01193 1.01474 1.19656 0.95276 0.93057 1.02339 1.20653 0.94070 0.96581 1.04769 1.20728 0.94198 0.97027 1.04917 1.21031 0.98530 0.93403 1.03973 1.21346 0.94278 0.97574 0.94801 1.20147 0.93817 0.94967 0.93278 1.17957 0.92457 0.87706 0.95348 0.94566 1.21078 0.93099 1.44359 0.95570 0.92261 1.24923 0.95088 0.95089 0.98177 1.69778 0.98321 1.47148 1.36058 0.86583 0.78580 0.78653 0.84567 1.19748 1.20914 1.21129 1.22706 1.02255 0.94936 0.93277 0.86433 1.23258 1.01453 0.96792 0.97401 1.23444 0.89273 0.93434 0.96864 1.88747 1.44883 1.77367 1.20560 1.23184 1.01411 0.97054 0.79907 0.91985 0.93633 0.91421 0.88218 0.88376 0.88264 0.84267 0.92834 0.91711 0.91412 0.93321 0.90533 0.93974 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.64 36.01 0.35 -1.56 16 2 C -0.10 -2.16 5.88 -104.62 -0.62 -2.78 16 3 C -0.14 -2.78 9.71 -39.59 -0.38 -3.16 16 4 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 5 C -0.15 -3.06 10.05 -39.58 -0.40 -3.45 16 6 C -0.06 -1.36 6.46 -39.59 -0.26 -1.62 16 7 C -0.02 -0.48 4.08 -104.63 -0.43 -0.91 16 8 C 0.08 1.90 1.15 -92.93 -0.11 1.79 16 9 H 0.04 0.82 5.99 -51.93 -0.31 0.50 16 10 C -0.50 -12.52 8.00 -34.44 -0.28 -12.80 16 11 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.07 1.74 5.12 -17.82 -0.09 1.65 16 13 N -0.88 -21.95 7.98 55.43 0.44 -21.50 16 14 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.11 -2.39 1.71 -89.09 -0.15 -2.55 16 19 H 0.12 2.75 4.85 -51.93 -0.25 2.50 16 20 C -0.15 -2.80 5.46 -24.72 -0.14 -2.93 16 21 C 0.05 0.79 7.72 38.21 0.29 1.09 16 22 O -0.40 -7.90 11.52 -35.23 -0.41 -8.31 16 23 C 0.06 1.25 7.06 37.73 0.27 1.52 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.07 1.25 5.89 -51.93 -0.31 0.95 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 29 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.14 3.20 4.99 -52.49 -0.26 2.94 16 31 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.06 1.22 7.78 -51.93 -0.40 0.81 16 33 H 0.07 1.20 7.58 -51.93 -0.39 0.81 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.78 7.37 -51.93 -0.38 1.40 16 LS Contribution 287.89 15.07 4.34 4.34 Total: -1.00 -25.75 287.89 -8.21 -33.97 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.24 Total: 5.35 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -2.33 Total: -28.99 kcal Atomic # 7 Polarization: -21.95 SS G_CDS: 0.44 Total: -21.50 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.41 Total: -8.31 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.75 -8.21 -33.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.502 kcal (2) G-P(sol) polarization free energy of solvation -25.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds