Wall clock time and date at job start Mon Mar 30 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 119.99989 * 2 1 4 4 C 1.38212 * 119.99910 * 180.27439 * 3 2 1 5 5 C 1.38263 * 119.99775 * 359.50884 * 4 3 2 6 6 C 1.38212 * 119.99982 * 0.27661 * 5 4 3 7 7 C 1.38216 * 119.99762 * 179.82354 * 2 1 3 8 8 C 1.50694 * 120.00017 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47558 * 31.50850 * 8 7 2 10 10 C 1.50696 * 109.47113 * 271.50419 * 8 7 2 11 11 H 1.08000 * 120.00254 * 114.85133 * 10 8 7 12 12 C 1.37875 * 120.00090 * 294.85058 * 10 8 7 13 13 N 1.31513 * 120.00139 * 5.41756 * 12 10 8 14 14 Si 1.86808 * 120.00146 * 185.41158 * 12 10 8 15 15 H 1.48499 * 109.46677 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46762 * 120.00283 * 14 12 10 17 17 H 1.48497 * 109.47188 * 239.99987 * 14 12 10 18 18 C 1.53003 * 109.47248 * 151.50835 * 8 7 2 19 19 H 1.09001 * 110.43848 * 65.01491 * 18 8 7 20 20 C 1.54814 * 110.48463 * 302.32853 * 18 8 7 21 21 C 1.54994 * 102.09387 * 220.44140 * 20 18 8 22 22 O 1.44376 * 103.48869 * 37.02813 * 21 20 18 23 23 C 1.43748 * 106.97577 * 319.93456 * 22 21 20 24 24 H 1.08994 * 109.47150 * 272.25484 * 1 2 3 25 25 H 1.08996 * 109.47105 * 32.25364 * 1 2 3 26 26 H 1.08999 * 109.46832 * 152.25161 * 1 2 3 27 27 H 1.08000 * 119.99925 * 0.06174 * 3 2 1 28 28 H 1.08004 * 120.00289 * 179.78495 * 4 3 2 29 29 H 1.07997 * 119.99612 * 180.25623 * 5 4 3 30 30 H 1.08000 * 119.99814 * 179.97438 * 6 5 4 31 31 H 0.97001 * 120.00298 * 179.97438 * 13 12 10 32 32 H 1.09000 * 110.90808 * 338.64605 * 20 18 8 33 33 H 1.09001 * 110.90571 * 102.24272 * 20 18 8 34 34 H 1.08995 * 110.61884 * 278.52441 * 21 20 18 35 35 H 1.09000 * 110.75050 * 155.58922 * 21 20 18 36 36 H 1.08993 * 109.88417 * 267.09396 * 23 22 21 37 37 H 1.09003 * 110.00374 * 146.01042 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0057 5 6 4.2717 -0.0001 -0.0012 6 6 3.5806 -1.1970 0.0033 7 6 2.1981 -1.1970 0.0037 8 6 1.4446 -2.5020 0.0071 9 1 0.5043 -2.3802 -0.5307 10 6 1.1606 -2.9143 1.4285 11 1 0.1418 -2.9610 1.7840 12 6 2.2013 -3.2321 2.2752 13 7 3.4447 -3.0735 1.8772 14 14 1.8452 -3.8877 3.9878 15 1 0.3765 -3.9731 4.1896 16 1 2.4441 -5.2385 4.1350 17 1 2.4321 -2.9731 4.9999 18 6 2.2877 -3.5796 -0.6776 19 1 3.1925 -3.7774 -0.1028 20 6 2.6429 -3.1527 -2.1227 21 6 2.4776 -4.4813 -2.9037 22 8 1.3412 -5.1059 -2.2690 23 6 1.4688 -4.8728 -0.8563 24 1 -0.3633 0.0404 1.0268 25 1 -0.3633 0.8691 -0.5484 26 1 -0.3633 -0.9095 -0.4785 27 1 1.6583 2.1326 0.0010 28 1 4.1205 2.1326 -0.0092 29 1 5.3517 -0.0001 -0.0015 30 1 4.1206 -2.1323 0.0064 31 1 4.1769 -3.2967 2.4730 32 1 1.9465 -2.3977 -2.4876 33 1 3.6701 -2.7927 -2.1806 34 1 3.3667 -5.1027 -2.7965 35 1 2.2709 -4.2874 -3.9562 36 1 1.9889 -5.7084 -0.3882 37 1 0.4827 -4.7520 -0.4078 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:01 Heat of formation + Delta-G solvation = -41.198940 kcal Electronic energy + Delta-G solvation = -18694.346380 eV Core-core repulsion = 16014.587240 eV Total energy + Delta-G solvation = -2679.759140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79603 -39.44064 -36.12218 -33.56116 -33.16384 -31.13338 -30.23068 -28.22598 -27.38262 -25.04098 -23.34739 -22.62160 -21.34758 -20.67416 -18.14465 -17.62221 -16.90033 -16.51350 -16.41942 -15.82846 -15.55963 -15.04555 -14.92018 -14.16954 -13.95459 -13.63457 -13.56172 -13.26416 -13.10644 -12.95800 -12.66537 -12.55022 -12.42060 -12.14747 -11.86570 -11.75288 -11.56509 -11.34689 -10.98325 -10.69195 -10.41752 -10.33573 -9.21068 -8.97939 -7.92095 -6.15381 0.89418 1.04062 1.38834 1.44895 1.51625 2.45080 3.20653 3.23643 3.37066 4.04782 4.17860 4.26526 4.32883 4.38642 4.48294 4.59267 4.62312 4.68549 4.75749 4.91056 4.97418 4.99148 5.05081 5.11108 5.14066 5.30643 5.32410 5.37203 5.52801 5.64934 5.71573 5.81715 5.90345 5.98177 6.14573 6.18363 6.40525 6.48306 6.61977 6.89555 7.51564 8.94972 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.013038 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.180666 B = 2147.027188 C = 3222.577998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.122 4.122 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.075 4.075 7 C -0.044 4.044 8 C 0.087 3.913 9 H 0.029 0.971 10 C -0.517 4.517 11 H 0.045 0.955 12 C 0.037 3.963 13 N -0.882 5.882 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.291 1.291 18 C -0.110 4.110 19 H 0.096 0.904 20 C -0.143 4.143 21 C 0.047 3.953 22 O -0.406 6.406 23 C 0.066 3.934 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.039 0.961 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 3.412 -5.846 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.164 4.164 4 C -0.166 4.166 5 C -0.180 4.180 6 C -0.094 4.094 7 C -0.044 4.044 8 C 0.068 3.932 9 H 0.047 0.953 10 C -0.555 4.555 11 H 0.064 0.936 12 C -0.164 4.164 13 N -0.519 5.519 14 Si 0.760 3.240 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.217 1.217 18 C -0.129 4.129 19 H 0.114 0.886 20 C -0.180 4.180 21 C -0.029 4.029 22 O -0.326 6.326 23 C -0.011 4.011 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.057 0.943 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.462 3.253 -5.866 6.724 hybrid contribution 0.200 -0.335 1.601 1.647 sum 0.662 2.918 -4.266 5.211 Atomic orbital electron populations 1.20663 0.91359 1.02116 1.01469 1.20030 0.96616 0.93261 1.02285 1.21026 0.94550 0.97160 1.03627 1.21117 0.94376 0.97890 1.03203 1.21300 0.99656 0.93295 1.03702 1.21264 0.94290 0.97798 0.96009 1.20183 0.94154 0.95240 0.94855 1.17870 0.92511 0.88659 0.94141 0.95297 1.21210 0.92453 1.44822 0.96979 0.93627 1.25359 0.95206 0.95559 1.00241 1.69908 0.98374 1.47335 1.36319 0.85903 0.78116 0.78053 0.81923 1.19901 1.20678 1.21717 1.22540 1.01024 0.94776 0.94584 0.88582 1.23147 1.01599 0.97533 0.95745 1.23647 0.88986 0.92383 0.97933 1.88729 1.46251 1.77710 1.19923 1.23036 1.00614 0.96804 0.80631 0.92523 0.90717 0.92324 0.85328 0.85123 0.86466 0.85869 0.93151 0.92132 0.90795 0.92013 0.87530 0.94276 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.54 9.64 71.24 0.69 -2.86 16 2 C -0.12 -4.96 5.88 -19.86 -0.12 -5.08 16 3 C -0.15 -5.28 9.71 22.27 0.22 -5.06 16 4 C -0.15 -5.23 10.05 22.27 0.22 -5.01 16 5 C -0.16 -6.27 10.05 22.27 0.22 -6.04 16 6 C -0.08 -3.30 6.46 22.27 0.14 -3.15 16 7 C -0.04 -1.96 4.08 -19.87 -0.08 -2.04 16 8 C 0.09 3.98 1.15 -12.29 -0.01 3.97 16 9 H 0.03 1.33 5.99 -2.39 -0.01 1.32 16 10 C -0.52 -26.22 8.00 25.60 0.20 -26.01 16 11 H 0.05 2.37 7.82 -2.91 -0.02 2.34 16 12 C 0.04 1.89 5.12 84.65 0.43 2.32 16 13 N -0.88 -44.75 7.98 21.45 0.17 -44.57 16 14 Si 0.93 41.77 29.54 68.60 2.03 43.80 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 C -0.11 -4.73 1.71 -9.80 -0.02 -4.74 16 19 H 0.10 4.59 4.85 -2.39 -0.01 4.58 16 20 C -0.14 -5.17 5.46 31.90 0.17 -5.00 16 21 C 0.05 1.50 7.72 72.66 0.56 2.06 16 22 O -0.41 -15.86 11.52 -148.98 -1.72 -17.58 16 23 C 0.07 2.74 7.06 72.35 0.51 3.25 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 26 H 0.06 2.16 5.89 -2.39 -0.01 2.15 16 27 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.12 5.75 4.99 -2.91 -0.01 5.73 16 31 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 32 H 0.06 2.23 7.78 -2.39 -0.02 2.21 16 33 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 3.16 7.37 -2.39 -0.02 3.15 16 Total: -1.00 -54.14 287.89 4.68 -49.46 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.05 Total: 22.28 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 3.15 Total: -53.39 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.17 Total: -44.57 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.72 Total: -17.58 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -54.14 4.68 -49.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.259 kcal (2) G-P(sol) polarization free energy of solvation -54.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds