Wall clock time and date at job start Mon Mar 30 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47557 * 2 1 4 4 C 1.50698 * 109.47256 * 120.00305 * 2 1 3 5 5 C 1.38161 * 119.97341 * 296.64001 * 4 2 1 6 6 C 1.38718 * 119.94289 * 179.97438 * 5 4 2 7 7 O 1.35903 * 120.04991 * 179.97438 * 6 5 4 8 8 C 1.38748 * 119.88894 * 0.02562 * 6 5 4 9 9 C 1.38119 * 119.94809 * 359.97438 * 8 6 5 10 10 C 1.50690 * 119.97672 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55397 * 236.63607 * 10 9 8 12 12 H 1.08001 * 120.00119 * 275.19402 * 11 10 9 13 13 C 1.37884 * 120.00143 * 95.19071 * 11 10 9 14 14 N 1.31512 * 119.99678 * 174.22309 * 13 11 10 15 15 Si 1.86797 * 119.99771 * 354.22099 * 13 11 10 16 16 H 1.48500 * 109.47249 * 92.35150 * 15 13 11 17 17 H 1.48500 * 109.46861 * 212.34949 * 15 13 11 18 18 H 1.48501 * 109.47438 * 332.34707 * 15 13 11 19 19 C 1.52995 * 117.49935 * 90.96065 * 10 9 8 20 20 C 1.53002 * 117.49715 * 22.30242 * 10 9 8 21 21 C 1.38250 * 119.97120 * 116.36370 * 4 2 1 22 22 H 1.08997 * 109.47366 * 59.99107 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99786 * 1 2 3 24 24 H 1.08996 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46665 * 240.00213 * 2 1 3 26 26 H 1.09001 * 109.46959 * 60.00394 * 3 2 1 27 27 H 1.08994 * 109.47385 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47512 * 300.00804 * 3 2 1 29 29 H 1.08001 * 120.02829 * 359.97438 * 5 4 2 30 30 H 0.96701 * 113.99900 * 90.00790 * 7 6 5 31 31 H 1.07998 * 120.02356 * 179.97438 * 8 6 5 32 32 H 0.96999 * 119.99516 * 180.02562 * 14 13 11 33 33 H 1.08995 * 117.49942 * 0.02562 * 19 10 9 34 34 H 1.09008 * 117.50096 * 145.01969 * 19 10 9 35 35 H 1.08999 * 117.49921 * 214.98243 * 20 10 9 36 36 H 1.08995 * 117.50117 * 0.02562 * 20 10 9 37 37 H 1.07996 * 119.94510 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.7565 -0.1989 2.4838 6 6 2.2188 -0.8537 3.6160 7 8 1.9492 -0.3521 4.8500 8 6 2.9578 -2.0208 3.4864 9 6 3.2309 -2.5282 2.2311 10 6 4.0339 -3.7955 2.0896 11 6 5.2778 -3.6860 1.2460 12 1 5.2138 -3.7929 0.1732 13 6 6.4976 -3.4494 1.8437 14 7 7.5974 -3.4668 1.1228 15 14 6.5879 -3.1041 3.6772 16 1 6.8115 -4.3762 4.4101 17 1 7.7106 -2.1714 3.9505 18 1 5.3133 -2.4902 4.1287 19 6 3.2653 -5.1177 2.0468 20 6 4.0757 -4.7430 3.2902 21 6 2.7640 -1.8767 1.1042 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.1815 0.7100 2.5821 30 1 1.1264 -0.6812 5.2371 31 1 3.3191 -2.5322 4.3664 32 1 8.4556 -3.3007 1.5434 33 1 2.1789 -5.0709 2.1205 34 1 3.6596 -5.9086 1.4086 35 1 5.0028 -5.2875 3.4695 36 1 3.5221 -4.4500 4.1821 37 1 2.9744 -2.2776 0.1237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259977458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:20 Heat of formation + Delta-G solvation = -9.402390 kcal Electronic energy + Delta-G solvation = -17964.110137 eV Core-core repulsion = 15285.729799 eV Total energy + Delta-G solvation = -2678.380338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65393 -37.21776 -36.70287 -33.96839 -32.10531 -29.34903 -29.01541 -27.02201 -25.84497 -23.33000 -22.30988 -21.43201 -20.53348 -18.50562 -17.59368 -16.23274 -15.97247 -15.34843 -14.95919 -14.49281 -14.13454 -13.82499 -13.66705 -13.26706 -12.73740 -12.67050 -12.19868 -11.99256 -11.69821 -11.43879 -11.20424 -11.12419 -10.96418 -10.73538 -10.57169 -10.38529 -10.31092 -9.91993 -9.58036 -9.40199 -8.62755 -8.59980 -8.01328 -7.79160 -6.14839 -4.18342 1.83691 1.93508 3.30162 3.42143 3.50503 4.14320 4.43094 4.57374 4.84668 5.00651 5.05528 5.17856 5.36033 5.48155 5.63983 5.69005 5.70758 5.81775 5.91019 5.96769 5.99546 6.04824 6.07400 6.17180 6.28744 6.38596 6.42785 6.50071 6.54080 6.66878 6.82465 6.98724 7.06142 7.12501 7.38683 7.46648 7.69306 8.03217 8.43865 8.86263 9.48126 10.95990 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021335 B = 0.008258 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.060248 B = 3389.847732 C = 3691.919623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.070 4.070 5 C -0.161 4.161 6 C 0.093 3.907 7 O -0.503 6.503 8 C -0.154 4.154 9 C 0.004 3.996 10 C 0.032 3.968 11 C -0.485 4.485 12 H 0.080 0.920 13 C 0.081 3.919 14 N -0.894 5.894 15 Si 0.873 3.127 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.245 1.245 19 C -0.171 4.171 20 C -0.202 4.202 21 C -0.103 4.103 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.380 0.620 31 H 0.122 0.878 32 H 0.266 0.734 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.761 5.204 1.926 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.070 4.070 5 C -0.179 4.179 6 C 0.049 3.951 7 O -0.312 6.312 8 C -0.173 4.173 9 C 0.003 3.997 10 C 0.031 3.969 11 C -0.521 4.521 12 H 0.098 0.902 13 C -0.122 4.122 14 N -0.530 5.530 15 Si 0.700 3.300 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.169 1.169 19 C -0.209 4.209 20 C -0.239 4.239 21 C -0.121 4.121 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.234 0.766 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.016 5.539 1.836 14.264 hybrid contribution -0.038 -0.031 1.211 1.212 sum -13.054 5.507 3.046 14.492 Atomic orbital electron populations 1.21832 0.94802 1.01797 1.01354 1.20080 0.95437 0.95933 0.95850 1.21847 1.01673 0.95253 1.01278 1.19613 0.98367 0.95335 0.93717 1.20915 1.04080 1.01206 0.91714 1.18396 0.99306 0.93455 0.83971 1.84832 1.45629 1.70309 1.30411 1.21396 1.01234 0.96186 0.98441 1.19697 0.91940 0.96665 0.91363 1.18218 0.96232 0.84901 0.97528 1.20177 0.87599 1.50094 0.94278 0.90162 1.24980 0.95328 0.93649 0.98286 1.69889 0.98174 1.48408 1.36527 0.86957 0.78837 0.78279 0.85890 1.20630 1.22310 1.16889 1.22906 0.96152 1.00777 1.01024 1.23012 1.01948 1.06819 0.92151 1.20882 0.97520 0.94586 0.99150 0.92764 0.92787 0.92590 0.90285 0.92729 0.92267 0.92782 0.86601 0.76618 0.86012 0.92456 0.90897 0.89161 0.89175 0.90610 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.04 37.16 0.34 -1.24 16 2 C -0.05 -0.74 3.09 -91.78 -0.28 -1.02 16 3 C -0.14 -1.79 8.97 37.15 0.33 -1.46 16 4 C -0.07 -1.18 4.78 -104.65 -0.50 -1.68 16 5 C -0.16 -2.65 8.67 -39.43 -0.34 -2.99 16 6 C 0.09 1.66 6.71 -39.22 -0.26 1.39 16 7 O -0.50 -7.88 13.50 -19.43 -0.26 -8.15 16 8 C -0.15 -3.09 8.00 -39.44 -0.32 -3.41 16 9 C 0.00 0.08 5.08 -104.65 -0.53 -0.45 16 10 C 0.03 0.74 1.12 -156.82 -0.17 0.56 16 11 C -0.48 -13.30 9.22 -34.44 -0.32 -13.62 16 12 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 13 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 14 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 15 Si 0.87 21.89 24.84 -169.99 -4.22 17.67 16 16 H -0.28 -6.84 6.99 56.52 0.40 -6.44 16 17 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 18 H -0.25 -5.88 4.47 56.52 0.25 -5.63 16 19 C -0.17 -3.45 9.94 -26.70 -0.27 -3.71 16 20 C -0.20 -4.29 6.93 -26.69 -0.18 -4.47 16 21 C -0.10 -2.02 9.12 -39.56 -0.36 -2.38 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.58 7.59 -51.93 -0.39 0.19 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 26 H 0.05 0.66 7.20 -51.93 -0.37 0.28 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.12 1.67 7.10 -52.49 -0.37 1.29 16 30 H 0.38 3.86 9.06 45.56 0.41 4.27 16 31 H 0.12 2.45 5.62 -52.49 -0.29 2.16 16 32 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 35 H 0.09 2.02 6.58 -51.93 -0.34 1.67 16 36 H 0.08 1.46 6.67 -51.93 -0.35 1.11 16 37 H 0.12 2.42 7.95 -52.49 -0.42 2.01 16 LS Contribution 297.86 15.07 4.49 4.49 Total: -1.00 -30.86 297.86 -6.98 -37.84 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.79 Total: 6.70 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: -2.97 Total: -32.26 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.26 Total: -8.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.22 Total: 17.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.86 -6.98 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.439 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds