Wall clock time and date at job start Mon Mar 30 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.50704 * 109.47225 * 119.99767 * 2 1 3 5 5 C 1.38288 * 119.94023 * 300.02382 * 4 2 1 6 6 C 1.38121 * 120.05413 * 179.97438 * 5 4 2 7 7 C 1.38754 * 119.94473 * 359.81115 * 6 5 4 8 8 O 1.35901 * 120.05938 * 180.22956 * 7 6 5 9 9 C 1.38708 * 119.88688 * 0.44109 * 7 6 5 10 10 C 1.50706 * 120.03101 * 179.79289 * 9 7 6 11 11 C 1.50706 * 115.54601 * 294.29578 * 10 9 7 12 12 H 1.08002 * 119.99405 * 145.58128 * 11 10 9 13 13 C 1.37875 * 120.00054 * 325.57953 * 11 10 9 14 14 N 1.31513 * 120.00161 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99800 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47141 * 90.00020 * 15 13 11 17 17 H 1.48508 * 109.47025 * 209.99886 * 15 13 11 18 18 H 1.48500 * 109.47176 * 329.99546 * 15 13 11 19 19 C 1.52998 * 117.49888 * 148.62204 * 10 9 7 20 20 C 1.52996 * 117.49648 * 79.96242 * 10 9 7 21 21 C 1.38169 * 119.94707 * 359.51448 * 9 7 6 22 22 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47304 * 300.00151 * 1 2 3 24 24 H 1.09001 * 109.47111 * 60.00274 * 1 2 3 25 25 H 1.08999 * 109.47304 * 239.99849 * 2 1 3 26 26 H 1.08999 * 109.46892 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46861 * 299.99879 * 3 2 1 28 28 H 1.08999 * 109.47111 * 59.99731 * 3 2 1 29 29 H 1.07998 * 119.97492 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.02872 * 180.02562 * 6 5 4 31 31 H 0.96700 * 114.00734 * 270.20903 * 8 7 6 32 32 H 0.96999 * 120.00283 * 179.97438 * 14 13 11 33 33 H 1.08992 * 117.50254 * 0.02562 * 19 10 9 34 34 H 1.09011 * 117.49344 * 145.02100 * 19 10 9 35 35 H 1.09006 * 117.49412 * 214.98161 * 20 10 9 36 36 H 1.08998 * 117.50192 * 359.97438 * 20 10 9 37 37 H 1.07994 * 119.97749 * 180.25047 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6971 -0.2371 2.4859 6 6 2.1558 -0.8866 3.6153 7 6 2.9503 -2.0172 3.4894 8 8 3.3990 -2.6608 4.5990 9 6 3.2894 -2.4868 2.2291 10 6 4.1561 -3.7117 2.0886 11 6 5.5698 -3.5687 2.5908 12 1 6.0686 -4.4111 3.0469 13 6 6.2263 -2.3625 2.4680 14 7 5.6191 -1.3369 1.9121 15 14 7.9788 -2.1855 3.0898 16 1 8.9276 -2.5300 2.0007 17 1 8.2109 -0.7843 3.5238 18 1 8.1910 -3.1013 4.2394 19 6 3.9274 -4.6025 0.8659 20 6 3.4829 -5.0758 2.2521 21 6 2.8273 -1.8340 1.1024 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4424 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.0761 0.6411 2.5834 30 1 1.8934 -0.5169 4.5955 31 1 4.2503 -2.3372 4.9243 32 1 6.0808 -0.4882 1.8260 33 1 3.1504 -4.3025 0.1629 34 1 4.7995 -5.0855 0.4249 35 1 4.0627 -5.8700 2.7225 36 1 2.4133 -5.0874 2.4616 37 1 3.0877 -2.2016 0.1209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:16 Heat of formation + Delta-G solvation = -23.765082 kcal Electronic energy + Delta-G solvation = -18371.112965 eV Core-core repulsion = 15692.109814 eV Total energy + Delta-G solvation = -2679.003151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77433 -38.14774 -37.63170 -34.98465 -34.14012 -31.20546 -29.35592 -27.88035 -27.61287 -24.22651 -23.72053 -22.61393 -21.72650 -20.20316 -19.05836 -17.97159 -16.72393 -16.60804 -16.27036 -15.76614 -15.47916 -14.88375 -14.67723 -14.45623 -14.17588 -13.62308 -13.48432 -13.04450 -12.95927 -12.85643 -12.78293 -12.46057 -12.29906 -12.11407 -11.86397 -11.82645 -11.60204 -11.47713 -10.96880 -10.90406 -10.60854 -10.19290 -9.33338 -8.87102 -7.91352 -6.14912 0.74728 0.92972 1.40740 1.44993 1.52790 2.42388 3.03450 3.06833 3.66110 3.90125 3.99219 4.05991 4.18378 4.38698 4.45365 4.57259 4.62536 4.64620 4.77756 4.89423 4.90121 4.91803 5.03648 5.06300 5.13992 5.21909 5.24285 5.39992 5.46816 5.50517 5.50851 5.56166 5.71361 5.80196 6.04363 6.16837 6.34941 6.43743 6.83241 7.18172 7.44145 8.95505 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.008850 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.755530 B = 3163.246745 C = 3448.993567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.128 4.128 6 C -0.158 4.158 7 C 0.078 3.922 8 O -0.504 6.504 9 C 0.014 3.986 10 C 0.059 3.941 11 C -0.503 4.503 12 H 0.050 0.950 13 C 0.034 3.966 14 N -0.878 5.878 15 Si 0.947 3.053 16 H -0.283 1.283 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.204 4.204 20 C -0.186 4.186 21 C -0.096 4.096 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.384 0.616 32 H 0.258 0.742 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 4.985 -1.733 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.191 4.191 4 C -0.089 4.089 5 C -0.146 4.146 6 C -0.176 4.176 7 C 0.034 3.966 8 O -0.314 6.314 9 C 0.013 3.987 10 C 0.059 3.941 11 C -0.540 4.540 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.514 5.514 15 Si 0.774 3.226 16 H -0.209 1.209 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.242 4.242 20 C -0.223 4.223 21 C -0.114 4.114 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.239 0.761 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.094 4.871 -1.839 9.624 hybrid contribution 1.900 0.046 0.351 1.933 sum -6.194 4.917 -1.488 8.047 Atomic orbital electron populations 1.21795 0.93010 1.01703 1.02654 1.20077 0.96770 0.96071 0.94157 1.21767 1.00178 0.94749 1.02457 1.19907 0.98154 0.95346 0.95536 1.20697 1.02269 1.00561 0.91053 1.21371 1.01347 0.95278 0.99641 1.18364 0.98975 0.93384 0.85899 1.84613 1.41272 1.62770 1.42700 1.19359 0.91542 0.95552 0.92254 1.17805 0.93480 0.86050 0.96770 1.20622 0.96390 0.96996 1.40030 0.93154 1.25554 1.00703 0.95553 0.95034 1.70138 1.37078 1.01668 1.42499 0.85723 0.81153 0.77118 0.78617 1.20912 1.20991 1.19478 1.23070 1.01704 1.08201 0.91198 1.22809 0.98890 1.00158 1.00421 1.20529 0.97835 0.96118 0.96935 0.93438 0.91977 0.90794 0.91753 0.94578 0.90770 0.92093 0.84510 0.85428 0.76054 0.93214 0.90433 0.90687 0.90274 0.90721 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.01 71.98 0.65 -2.48 16 2 C -0.05 -1.53 3.09 -11.54 -0.04 -1.57 16 3 C -0.13 -3.53 9.01 71.98 0.65 -2.88 16 4 C -0.09 -3.33 4.78 -19.85 -0.09 -3.43 16 5 C -0.13 -4.54 8.70 22.25 0.19 -4.35 16 6 C -0.16 -6.21 9.99 22.37 0.22 -5.99 16 7 C 0.08 3.57 6.62 22.51 0.15 3.71 16 8 O -0.50 -22.65 12.63 -92.43 -1.17 -23.82 16 9 C 0.01 0.67 3.05 -19.77 -0.06 0.61 16 10 C 0.06 2.95 1.64 -53.67 -0.09 2.87 16 11 C -0.50 -26.76 8.66 25.60 0.22 -26.54 16 12 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 13 C 0.03 1.77 5.37 84.65 0.45 2.22 16 14 N -0.88 -46.76 10.89 21.45 0.23 -46.52 16 15 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 C -0.20 -9.29 9.43 30.62 0.29 -9.00 16 20 C -0.19 -8.37 9.94 30.62 0.30 -8.07 16 21 C -0.10 -4.25 8.19 22.25 0.18 -4.07 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.06 1.35 7.38 -2.39 -0.02 1.33 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.95 7.87 -2.39 -0.02 1.93 16 26 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.49 7.38 -2.39 -0.02 1.47 16 29 H 0.14 3.92 7.09 -2.91 -0.02 3.89 16 30 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.38 16.00 9.06 -74.06 -0.67 15.33 16 32 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 33 H 0.08 3.31 7.13 -2.39 -0.02 3.29 16 34 H 0.07 3.40 8.14 -2.38 -0.02 3.38 16 35 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 36 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.10 4.32 6.90 -2.91 -0.02 4.30 16 Total: -1.00 -58.09 305.86 4.51 -53.58 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.39 Total: 31.92 kcal Atomic # 6 Polarization: -61.99 SS G_CDS: 3.03 Total: -58.95 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.23 Total: -46.52 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.17 Total: -23.82 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -58.09 4.51 -53.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.816 kcal (2) G-P(sol) polarization free energy of solvation -58.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds