Wall clock time and date at job start Mon Mar 30 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38162 * 120.03175 * 2 1 4 4 C 1.38249 * 120.05740 * 179.76191 * 3 2 1 5 5 C 1.38287 * 120.11154 * 0.51628 * 4 3 2 6 6 C 1.50701 * 119.97405 * 179.76419 * 5 4 3 7 7 H 1.08994 * 109.47378 * 174.29485 * 6 5 4 8 8 C 1.50699 * 109.46798 * 294.29829 * 6 5 4 9 9 H 1.08003 * 120.00423 * 359.97438 * 8 6 5 10 10 C 1.37880 * 119.99943 * 180.02562 * 8 6 5 11 11 N 1.31513 * 119.99679 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00039 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46924 * 90.00143 * 12 10 8 14 14 H 1.48494 * 109.47375 * 329.99864 * 12 10 8 15 15 H 1.48502 * 109.46911 * 209.99552 * 12 10 8 16 16 C 1.53001 * 109.46933 * 54.29216 * 6 5 4 17 17 C 1.53006 * 117.49451 * 128.75032 * 16 6 5 18 18 C 1.52996 * 117.49719 * 60.09200 * 16 6 5 19 19 C 1.38121 * 120.05226 * 359.48562 * 5 4 3 20 20 C 1.50699 * 120.02511 * 180.27938 * 19 5 4 21 21 C 1.38714 * 120.02895 * 180.02562 * 2 1 3 22 22 O 1.35898 * 120.05405 * 0.02562 * 21 2 1 23 23 H 1.08997 * 109.47074 * 269.98155 * 1 2 3 24 24 H 1.08999 * 109.46699 * 29.98166 * 1 2 3 25 25 H 1.08998 * 109.47028 * 149.97677 * 1 2 3 26 26 H 1.08000 * 119.97118 * 0.02562 * 3 2 1 27 27 H 1.08005 * 119.94445 * 180.25137 * 4 3 2 28 28 H 0.97005 * 120.00428 * 0.02562 * 11 10 8 29 29 H 1.09001 * 115.55249 * 274.42116 * 16 6 5 30 30 H 1.08992 * 117.49969 * 359.97438 * 17 16 6 31 31 H 1.08997 * 117.49767 * 145.02473 * 17 16 6 32 32 H 1.09001 * 117.50160 * 214.97816 * 18 16 6 33 33 H 1.09001 * 117.50200 * 359.97438 * 18 16 6 34 34 H 1.09001 * 109.47107 * 84.37303 * 20 19 5 35 35 H 1.09005 * 109.47139 * 204.36465 * 20 19 5 36 36 H 1.08991 * 109.47588 * 324.36913 * 20 19 5 37 37 H 0.96704 * 114.00657 * 269.98230 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1968 0.0050 5 6 4.2753 0.0008 -0.0008 6 6 5.7823 0.0052 -0.0007 7 1 6.1486 -1.0168 0.0964 8 6 6.2829 0.5976 -1.2928 9 1 5.5801 0.9366 -2.0396 10 6 7.6382 0.7058 -1.5222 11 7 8.4939 0.2925 -0.6131 12 14 8.2587 1.4394 -3.1241 13 1 8.4200 2.9072 -2.9665 14 1 7.2812 1.1622 -4.2070 15 1 9.5685 0.8321 -3.4720 16 6 6.2898 0.8429 1.1747 17 6 7.3279 0.2053 2.1003 18 6 5.8884 0.4000 2.5831 19 6 3.5886 -1.1976 -0.0009 20 6 4.3459 -2.5005 -0.0008 21 6 2.2011 -1.2009 -0.0005 22 8 1.5234 -2.3788 -0.0016 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6585 2.1315 0.0004 27 1 4.1196 2.1329 0.0091 28 1 8.1717 -0.0888 0.2186 29 1 6.3719 1.9136 0.9881 30 1 7.6490 -0.8110 1.8721 31 1 8.0928 0.8567 2.5230 32 1 5.7069 1.1793 3.3232 33 1 5.2625 -0.4879 2.6723 34 1 4.6156 -2.7640 1.0219 35 1 3.7192 -3.2851 -0.4248 36 1 5.2506 -2.3950 -0.5994 37 1 1.3270 -2.7206 0.8815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:01 Heat of formation + Delta-G solvation = -13.588254 kcal Electronic energy + Delta-G solvation = -18181.110955 eV Core-core repulsion = 15502.549104 eV Total energy + Delta-G solvation = -2678.561851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73753 -37.45913 -35.86517 -33.45178 -32.47665 -30.58105 -28.60290 -26.44972 -25.02082 -23.04183 -21.64450 -21.57751 -20.22212 -19.24816 -17.53110 -16.63340 -15.66206 -15.25214 -14.54254 -14.38056 -13.75619 -13.55948 -13.28081 -12.99908 -12.67617 -12.63934 -12.30803 -12.03122 -11.66143 -11.53520 -10.94767 -10.85523 -10.82363 -10.76727 -10.48817 -10.14366 -10.07867 -9.81383 -9.54468 -9.05370 -8.57785 -8.29405 -7.95996 -7.63233 -6.26238 -4.05876 1.84350 1.95209 3.44281 3.47767 3.63581 4.18523 4.53231 4.65532 4.76592 5.23754 5.28577 5.36045 5.58968 5.69807 5.74340 5.76616 5.84217 5.94593 5.97541 6.00554 6.09473 6.23232 6.29175 6.30130 6.34092 6.54563 6.67332 6.74145 6.81875 6.87522 6.99267 7.06139 7.12765 7.26675 7.46103 7.69683 8.03651 8.19666 8.47979 8.93635 9.67362 11.10084 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.007722 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.101778 B = 3625.077571 C = 3969.597842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.137 4.137 3 C -0.117 4.117 4 C -0.108 4.108 5 C -0.011 4.011 6 C 0.088 3.912 7 H 0.035 0.965 8 C -0.594 4.594 9 H 0.051 0.949 10 C 0.026 3.974 11 N -0.914 5.914 12 Si 1.065 2.935 13 H -0.289 1.289 14 H -0.289 1.289 15 H -0.285 1.285 16 C -0.104 4.104 17 C -0.169 4.169 18 C -0.207 4.207 19 C -0.116 4.116 20 C -0.110 4.110 21 C 0.093 3.907 22 O -0.497 6.497 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.284 0.716 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -1.446 4.650 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.138 4.138 3 C -0.136 4.136 4 C -0.127 4.127 5 C -0.011 4.011 6 C 0.070 3.930 7 H 0.053 0.947 8 C -0.631 4.631 9 H 0.069 0.931 10 C -0.180 4.180 11 N -0.551 5.551 12 Si 0.894 3.106 13 H -0.216 1.216 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.123 4.123 17 C -0.206 4.206 18 C -0.245 4.245 19 C -0.117 4.117 20 C -0.166 4.166 21 C 0.049 3.951 22 O -0.305 6.305 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.244 -1.019 3.197 9.834 hybrid contribution -1.378 -0.292 1.370 1.964 sum -10.622 -1.311 4.567 11.636 Atomic orbital electron populations 1.20557 0.91670 1.02349 1.01309 1.19920 0.95797 0.92711 1.05364 1.20827 0.94355 0.96443 1.01929 1.21022 0.93037 0.98627 0.99965 1.20049 0.97543 0.90962 0.92533 1.17761 0.85847 0.95819 0.93604 0.94708 1.21864 0.94128 1.45710 1.01446 0.93084 1.25680 0.93140 0.95722 1.03440 1.70718 1.37919 1.37411 1.09059 0.83598 0.75752 0.76288 0.74952 1.21560 1.21553 1.21077 1.22667 1.00391 0.99818 0.89445 1.22776 0.91240 1.01766 1.04835 1.23002 0.98822 1.02727 0.99926 1.20067 0.92351 0.96128 1.03140 1.20676 1.00437 0.93928 1.01595 1.18021 0.89182 0.84303 1.03642 1.84764 1.76552 1.36623 1.32593 0.92278 0.92171 0.91567 0.86749 0.86016 0.90120 0.89140 0.89514 0.90037 0.90498 0.90214 0.92345 0.91941 0.90319 0.76865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.79 36.00 0.35 -0.96 16 2 C -0.14 -2.28 5.89 -104.48 -0.62 -2.90 16 3 C -0.12 -2.02 9.70 -39.61 -0.38 -2.40 16 4 C -0.11 -2.16 8.97 -39.56 -0.35 -2.51 16 5 C -0.01 -0.23 4.38 -104.65 -0.46 -0.69 16 6 C 0.09 2.10 1.59 -92.92 -0.15 1.95 16 7 H 0.04 0.88 5.33 -51.93 -0.28 0.61 16 8 C -0.59 -16.09 8.30 -34.44 -0.29 -16.38 16 9 H 0.05 1.42 7.73 -52.48 -0.41 1.02 16 10 C 0.03 0.72 5.30 -17.82 -0.09 0.63 16 11 N -0.91 -26.28 13.38 55.43 0.74 -25.54 16 12 Si 1.07 24.94 29.90 -169.99 -5.08 19.85 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.10 -2.33 3.62 -90.62 -0.33 -2.66 16 17 C -0.17 -3.52 8.14 -26.69 -0.22 -3.73 16 18 C -0.21 -3.94 9.87 -26.69 -0.26 -4.20 16 19 C -0.12 -2.29 5.89 -104.48 -0.62 -2.91 16 20 C -0.11 -1.99 8.98 36.01 0.32 -1.67 16 21 C 0.09 1.63 6.65 -39.22 -0.26 1.37 16 22 O -0.50 -7.46 11.50 -19.42 -0.22 -7.69 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.12 2.43 7.91 -52.48 -0.42 2.02 16 28 H 0.28 7.81 3.55 -40.82 -0.15 7.67 16 29 H 0.09 2.14 8.11 -51.93 -0.42 1.72 16 30 H 0.09 1.86 7.42 -51.93 -0.39 1.47 16 31 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.03 7.37 -51.93 -0.38 0.65 16 36 H 0.08 1.60 6.53 -51.93 -0.34 1.26 16 37 H 0.38 3.89 9.06 45.56 0.41 4.30 16 LS Contribution 300.59 15.07 4.53 4.53 Total: -1.00 -29.98 300.59 -7.89 -37.87 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.50 Total: 8.04 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: -3.35 Total: -37.06 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.22 Total: -7.69 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.98 -7.89 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.283 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds