Wall clock time and date at job start Mon Mar 30 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35905 * 117.00066 * 2 1 4 4 C 1.38748 * 120.05289 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94305 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05527 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.94838 * 180.02562 * 6 5 4 8 8 C 1.38248 * 120.10908 * 359.70388 * 6 5 4 9 9 C 1.50705 * 119.96964 * 180.27769 * 8 6 5 10 10 C 1.38162 * 120.05705 * 0.54626 * 8 6 5 11 11 C 1.50700 * 120.03073 * 179.74537 * 10 8 6 12 12 C 1.50694 * 115.56333 * 282.15639 * 11 10 8 13 13 H 1.08001 * 119.99822 * 140.28805 * 12 11 10 14 14 C 1.37879 * 120.00135 * 320.27975 * 12 11 10 15 15 N 1.31516 * 119.99761 * 348.49079 * 14 12 11 16 16 Si 1.86801 * 120.00054 * 168.48790 * 14 12 11 17 17 H 1.48500 * 109.47050 * 60.00259 * 16 14 12 18 18 H 1.48497 * 109.46920 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46915 * 300.00214 * 16 14 12 20 20 C 1.53000 * 117.49357 * 67.84385 * 11 10 8 21 21 C 1.52998 * 59.99994 * 107.48910 * 20 11 10 22 22 H 1.08996 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46819 * 299.99824 * 1 2 3 24 24 H 1.08997 * 109.47021 * 59.99580 * 1 2 3 25 25 H 1.08004 * 120.03077 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.97374 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.47191 * 89.99654 * 7 6 5 28 28 H 1.08994 * 109.47379 * 210.00422 * 7 6 5 29 29 H 1.09004 * 109.46351 * 329.99803 * 7 6 5 30 30 H 1.08997 * 109.47123 * 275.33501 * 9 8 6 31 31 H 1.08997 * 109.47787 * 35.33982 * 9 8 6 32 32 H 1.08997 * 109.46883 * 155.34239 * 9 8 6 33 33 H 0.97001 * 119.99785 * 185.01201 * 15 14 12 34 34 H 1.08994 * 117.50296 * 359.97438 * 20 11 10 35 35 H 1.09010 * 117.49729 * 214.97842 * 20 11 10 36 36 H 1.08998 * 117.49681 * 107.48960 * 21 20 11 37 37 H 1.09000 * 117.49720 * 252.50830 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 3.9862 5.0185 -0.0016 8 6 4.0560 2.5171 0.0046 9 6 5.5609 2.5982 0.0103 10 6 3.4312 1.2848 -0.0001 11 6 4.2538 0.0221 0.0008 12 6 4.8538 -0.3641 -1.3265 13 1 5.8561 -0.7639 -1.3701 14 6 4.1231 -0.2072 -2.4851 15 7 2.8372 0.0610 -2.4204 16 14 4.9596 -0.3754 -4.1469 17 1 5.5429 -1.7353 -4.2720 18 1 3.9627 -0.1626 -5.2267 19 1 6.0384 0.6386 -4.2629 20 6 5.0632 -0.2926 1.2604 21 6 3.8113 -1.1085 0.9319 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.2129 2.3203 -0.0005 26 1 1.3341 4.5113 -0.0011 27 1 4.1516 5.3421 1.0260 28 1 4.9439 4.9383 -0.5159 29 1 3.3579 5.7464 -0.5151 30 1 5.9226 2.7103 -1.0118 31 1 5.8763 3.4564 0.6036 32 1 5.9722 1.6863 0.4432 33 1 2.3083 0.0995 -3.2326 34 1 5.0012 0.4138 2.0882 35 1 6.0299 -0.7791 1.1290 36 1 3.9543 -2.1316 0.5844 37 1 2.9253 -0.9390 1.5437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:20 Heat of formation + Delta-G solvation = 8.305092 kcal Electronic energy + Delta-G solvation = -18825.272662 eV Core-core repulsion = 16147.660178 eV Total energy + Delta-G solvation = -2677.612484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44077 -36.94492 -35.89683 -31.99283 -31.65100 -30.55556 -27.56244 -25.81018 -25.38962 -24.97714 -21.84663 -21.06481 -19.61827 -18.85726 -16.78824 -16.06946 -15.39287 -14.72077 -14.47601 -14.10937 -13.50742 -13.39241 -13.23622 -12.96846 -12.67616 -12.03783 -11.81400 -11.60759 -11.30260 -11.17422 -11.02040 -10.89252 -10.84618 -10.51631 -10.37286 -10.23036 -10.13049 -9.76565 -9.16609 -9.13693 -8.55244 -8.05410 -7.49082 -6.83665 -5.85462 -3.94852 2.41590 2.55145 3.33640 3.38903 3.41667 4.37698 4.47183 4.81570 5.12585 5.56139 5.61295 5.73749 5.76385 5.81509 5.88154 5.98822 6.10676 6.12635 6.16719 6.24475 6.33299 6.38699 6.53301 6.59061 6.61681 6.73290 6.76769 6.93952 7.08461 7.14418 7.32520 7.40397 7.48604 7.58271 7.74349 7.91410 8.00843 8.47876 8.65488 8.98390 9.62359 11.10563 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.011865 C = 0.010244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.859325 B = 2359.294787 C = 2732.683246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.271 6.271 3 C 0.185 3.815 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.148 4.148 7 C -0.098 4.098 8 C -0.051 4.051 9 C -0.105 4.105 10 C -0.010 4.010 11 C 0.098 3.902 12 C -0.493 4.493 13 H 0.060 0.940 14 C 0.078 3.922 15 N -0.851 5.851 16 Si 0.883 3.117 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.212 4.212 21 C -0.184 4.184 22 H 0.084 0.916 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.257 0.743 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 5.015 4.803 7.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.182 6.182 3 C 0.138 3.862 4 C -0.254 4.254 5 C -0.121 4.121 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.051 4.051 9 C -0.161 4.161 10 C -0.011 4.011 11 C 0.097 3.903 12 C -0.531 4.531 13 H 0.078 0.922 14 C -0.128 4.128 15 N -0.486 5.486 16 Si 0.711 3.289 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.249 4.249 21 C -0.222 4.222 22 H 0.102 0.898 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.337 4.915 4.667 7.169 hybrid contribution -0.153 0.013 -1.180 1.190 sum -2.490 4.928 3.487 6.530 Atomic orbital electron populations 1.22796 0.81846 1.02177 0.99580 1.86341 1.17939 1.26403 1.87482 1.18515 0.91650 0.83301 0.92699 1.20928 0.98668 0.92898 1.12946 1.20358 0.93628 0.96064 1.02083 1.19365 0.93314 0.94406 1.07787 1.20591 1.00039 0.94117 1.00730 1.19230 0.95485 0.91195 0.99191 1.20725 0.92017 1.01801 1.01571 1.18489 0.89729 0.94076 0.98809 1.17394 0.94370 0.89126 0.89368 1.20310 1.00365 1.43608 0.88768 0.92208 1.24930 0.94716 0.94522 0.98583 1.70023 1.04851 1.46059 1.27632 0.86804 0.79470 0.78525 0.84083 1.20405 1.21462 1.20199 1.22972 0.95644 1.04905 1.01379 1.22894 0.95322 0.97856 1.06162 0.89784 0.94646 0.93675 0.87309 0.87842 0.92711 0.92117 0.92960 0.91747 0.93495 0.90371 0.93256 0.91526 0.90605 0.90678 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.56 16 2 O -0.27 -6.19 7.30 -19.44 -0.14 -6.33 16 3 C 0.18 4.30 5.17 -39.22 -0.20 4.10 16 4 C -0.24 -4.88 9.04 -39.43 -0.36 -5.24 16 5 C -0.10 -2.01 9.69 -39.61 -0.38 -2.39 16 6 C -0.15 -2.96 5.88 -104.60 -0.62 -3.57 16 7 C -0.10 -1.54 9.21 36.01 0.33 -1.21 16 8 C -0.05 -1.12 5.87 -104.64 -0.61 -1.74 16 9 C -0.10 -2.07 8.58 36.01 0.31 -1.76 16 10 C -0.01 -0.25 3.90 -104.48 -0.41 -0.65 16 11 C 0.10 2.43 0.77 -156.82 -0.12 2.31 16 12 C -0.49 -13.35 8.87 -34.44 -0.31 -13.66 16 13 H 0.06 1.61 7.84 -52.49 -0.41 1.20 16 14 C 0.08 2.12 5.23 -17.82 -0.09 2.03 16 15 N -0.85 -23.67 10.19 55.43 0.56 -23.10 16 16 Si 0.88 21.20 29.56 -169.99 -5.02 16.18 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.21 -4.65 8.09 -26.73 -0.22 -4.87 16 21 C -0.18 -4.34 8.82 -26.73 -0.24 -4.58 16 22 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.04 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.04 0.78 7.66 -51.93 -0.40 0.38 16 25 H 0.11 1.98 6.30 -52.48 -0.33 1.65 16 26 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.93 6.81 -51.93 -0.35 0.57 16 29 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.77 7.01 -51.93 -0.36 0.41 16 32 H 0.08 1.59 5.35 -51.93 -0.28 1.31 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 36 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.07 1.56 7.11 -51.93 -0.37 1.19 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -29.24 296.37 -7.47 -36.71 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.42 Total: 1.74 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -1.92 Total: -29.66 kcal Atomic # 7 Polarization: -23.67 SS G_CDS: 0.56 Total: -23.10 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.14 Total: -6.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.24 -7.47 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.015 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds