Wall clock time and date at job start Mon Mar 30 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35905 * 117.00066 * 2 1 4 4 C 1.38748 * 120.05289 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94305 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05527 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.94838 * 180.02562 * 6 5 4 8 8 C 1.38248 * 120.10908 * 359.70388 * 6 5 4 9 9 C 1.50705 * 119.96964 * 180.27769 * 8 6 5 10 10 C 1.38162 * 120.05705 * 0.54626 * 8 6 5 11 11 C 1.50700 * 120.03073 * 179.74537 * 10 8 6 12 12 C 1.50694 * 115.56333 * 282.15639 * 11 10 8 13 13 H 1.08001 * 119.99822 * 140.28805 * 12 11 10 14 14 C 1.37879 * 120.00135 * 320.27975 * 12 11 10 15 15 N 1.31516 * 119.99761 * 348.49079 * 14 12 11 16 16 Si 1.86801 * 120.00054 * 168.48790 * 14 12 11 17 17 H 1.48500 * 109.47050 * 60.00259 * 16 14 12 18 18 H 1.48497 * 109.46920 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46915 * 300.00214 * 16 14 12 20 20 C 1.53000 * 117.49357 * 67.84385 * 11 10 8 21 21 C 1.52998 * 59.99994 * 107.48910 * 20 11 10 22 22 H 1.08996 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46819 * 299.99824 * 1 2 3 24 24 H 1.08997 * 109.47021 * 59.99580 * 1 2 3 25 25 H 1.08004 * 120.03077 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.97374 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.47191 * 89.99654 * 7 6 5 28 28 H 1.08994 * 109.47379 * 210.00422 * 7 6 5 29 29 H 1.09004 * 109.46351 * 329.99803 * 7 6 5 30 30 H 1.08997 * 109.47123 * 275.33501 * 9 8 6 31 31 H 1.08997 * 109.47787 * 35.33982 * 9 8 6 32 32 H 1.08997 * 109.46883 * 155.34239 * 9 8 6 33 33 H 0.97001 * 119.99785 * 185.01201 * 15 14 12 34 34 H 1.08994 * 117.50296 * 359.97438 * 20 11 10 35 35 H 1.09010 * 117.49729 * 214.97842 * 20 11 10 36 36 H 1.08998 * 117.49681 * 107.48960 * 21 20 11 37 37 H 1.09000 * 117.49720 * 252.50830 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 3.9862 5.0185 -0.0016 8 6 4.0560 2.5171 0.0046 9 6 5.5609 2.5982 0.0103 10 6 3.4312 1.2848 -0.0001 11 6 4.2538 0.0221 0.0008 12 6 4.8538 -0.3641 -1.3265 13 1 5.8561 -0.7639 -1.3701 14 6 4.1231 -0.2072 -2.4851 15 7 2.8372 0.0610 -2.4204 16 14 4.9596 -0.3754 -4.1469 17 1 5.5429 -1.7353 -4.2720 18 1 3.9627 -0.1626 -5.2267 19 1 6.0384 0.6386 -4.2629 20 6 5.0632 -0.2926 1.2604 21 6 3.8113 -1.1085 0.9319 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.2129 2.3203 -0.0005 26 1 1.3341 4.5113 -0.0011 27 1 4.1516 5.3421 1.0260 28 1 4.9439 4.9383 -0.5159 29 1 3.3579 5.7464 -0.5151 30 1 5.9226 2.7103 -1.0118 31 1 5.8763 3.4564 0.6036 32 1 5.9722 1.6863 0.4432 33 1 2.3083 0.0995 -3.2326 34 1 5.0012 0.4138 2.0882 35 1 6.0299 -0.7791 1.1290 36 1 3.9543 -2.1316 0.5844 37 1 2.9253 -0.9390 1.5437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260002597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:19 Heat of formation + Delta-G solvation = -6.110601 kcal Electronic energy + Delta-G solvation = -18825.897773 eV Core-core repulsion = 16147.660178 eV Total energy + Delta-G solvation = -2678.237595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03503 -38.53124 -37.62408 -34.02222 -33.16721 -32.08352 -28.99940 -27.60509 -27.12853 -26.39644 -23.52246 -22.86597 -21.17277 -20.66071 -18.51432 -17.80877 -16.94265 -16.55324 -16.17260 -15.82030 -15.15886 -14.91000 -14.68787 -14.48142 -14.33464 -13.57869 -13.41738 -13.01933 -12.93146 -12.81743 -12.71631 -12.62280 -12.44170 -12.26029 -12.11114 -11.99313 -11.76145 -11.25693 -11.04229 -10.96548 -10.39139 -9.97987 -9.11667 -8.47129 -7.83343 -6.02734 0.81143 0.98656 1.41431 1.43848 1.49171 2.46299 2.90145 3.15031 3.23025 3.73859 4.14164 4.26067 4.26996 4.43061 4.53706 4.58420 4.65350 4.67682 4.73346 4.78211 4.87476 4.91774 4.97409 4.99432 5.05287 5.09749 5.23689 5.27222 5.37786 5.53741 5.62633 5.64281 5.80739 5.86629 5.98224 6.16274 6.42093 6.49541 6.92183 7.10676 7.55375 9.04581 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.011865 C = 0.010244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.859325 B = 2359.294787 C = 2732.683246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.302 6.302 3 C 0.162 3.838 4 C -0.243 4.243 5 C -0.105 4.105 6 C -0.154 4.154 7 C -0.095 4.095 8 C -0.072 4.072 9 C -0.099 4.099 10 C -0.043 4.043 11 C 0.079 3.921 12 C -0.509 4.509 13 H 0.050 0.950 14 C 0.038 3.962 15 N -0.865 5.865 16 Si 0.935 3.065 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.189 4.189 21 C -0.187 4.187 22 H 0.100 0.900 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.129 0.871 26 H 0.137 0.863 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 6.764 5.143 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.116 3.884 4 C -0.262 4.262 5 C -0.123 4.123 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.073 4.073 9 C -0.155 4.155 10 C -0.044 4.044 11 C 0.079 3.921 12 C -0.546 4.546 13 H 0.068 0.932 14 C -0.166 4.166 15 N -0.500 5.500 16 Si 0.762 3.238 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.226 4.226 21 C -0.225 4.225 22 H 0.118 0.882 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.459 6.662 5.016 8.694 hybrid contribution -0.153 -0.532 -1.247 1.365 sum -2.613 6.130 3.768 7.655 Atomic orbital electron populations 1.23015 0.79663 1.03646 1.00490 1.86267 1.20408 1.26966 1.87742 1.18750 0.91869 0.84127 0.93669 1.21247 0.99781 0.92733 1.12389 1.20809 0.94002 0.96860 1.00650 1.19852 0.93762 0.95587 1.06261 1.20637 1.00047 0.92099 1.02377 1.19609 0.96684 0.91469 0.99503 1.20684 0.90917 1.02586 1.01321 1.18638 0.90428 0.94331 1.01001 1.17434 0.95573 0.90057 0.89086 1.20534 1.00011 1.43692 0.90400 0.93228 1.25501 0.95259 0.94691 1.01126 1.70183 1.05492 1.46769 1.27563 0.85989 0.78559 0.78447 0.80842 1.20175 1.21512 1.19897 1.22945 0.95048 1.04047 1.00591 1.22774 0.96321 0.97014 1.06369 0.88181 0.92378 0.93904 0.85285 0.84504 0.90613 0.91905 0.91144 0.92838 0.90336 0.91590 0.93926 0.90024 0.90088 0.91991 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.81 113.37 1.11 2.05 16 2 O -0.30 -13.88 7.30 -92.48 -0.67 -14.55 16 3 C 0.16 7.51 5.17 22.50 0.12 7.63 16 4 C -0.24 -9.70 9.04 22.36 0.20 -9.50 16 5 C -0.11 -3.83 9.69 22.25 0.22 -3.61 16 6 C -0.15 -5.78 5.88 -19.85 -0.12 -5.89 16 7 C -0.10 -2.64 9.21 71.24 0.66 -1.99 16 8 C -0.07 -3.13 5.87 -19.88 -0.12 -3.24 16 9 C -0.10 -3.78 8.58 71.24 0.61 -3.17 16 10 C -0.04 -2.08 3.90 -19.77 -0.08 -2.16 16 11 C 0.08 3.96 0.77 -53.68 -0.04 3.92 16 12 C -0.51 -27.98 8.87 25.60 0.23 -27.75 16 13 H 0.05 2.73 7.84 -2.91 -0.02 2.71 16 14 C 0.04 2.07 5.23 84.66 0.44 2.51 16 15 N -0.87 -48.70 10.19 21.45 0.22 -48.48 16 16 Si 0.93 43.91 29.56 68.60 2.03 45.94 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 20 C -0.19 -8.28 8.09 30.59 0.25 -8.03 16 21 C -0.19 -8.93 8.82 30.59 0.27 -8.66 16 22 H 0.10 2.99 8.14 -2.39 -0.02 2.98 16 23 H 0.06 1.68 7.66 -2.39 -0.02 1.66 16 24 H 0.04 1.45 7.66 -2.39 -0.02 1.43 16 25 H 0.13 4.44 6.30 -2.91 -0.02 4.42 16 26 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.72 6.81 -2.39 -0.02 1.70 16 29 H 0.07 1.70 8.08 -2.38 -0.02 1.68 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 2.41 7.01 -2.39 -0.02 2.40 16 32 H 0.07 2.64 5.35 -2.39 -0.01 2.63 16 33 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16 34 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.08 3.40 8.14 -2.38 -0.02 3.38 16 36 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.07 3.23 7.11 -2.39 -0.02 3.21 16 Total: -1.00 -62.66 296.37 6.37 -56.29 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.05 Total: 18.71 kcal Atomic # 6 Polarization: -61.65 SS G_CDS: 3.75 Total: -57.90 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.22 Total: -48.48 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.67 Total: -14.55 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -62.66 6.37 -56.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.180 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds