Wall clock time and date at job start Mon Mar 30 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.66664 * 2 1 4 4 C 1.54705 * 110.75042 * 236.58204 * 2 1 3 5 5 C 1.51651 * 101.93201 * 266.95486 * 4 2 1 6 6 C 1.37741 * 132.17512 * 164.13911 * 5 4 2 7 7 C 1.38352 * 119.97710 * 180.92223 * 6 5 4 8 8 C 1.38288 * 119.76586 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.82165 * 179.81161 * 8 7 6 10 10 C 1.52997 * 109.47466 * 90.00045 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.37929 * 120.35291 * 0.08866 * 8 7 6 20 20 C 1.38885 * 107.03681 * 344.66484 * 5 4 2 21 21 O 1.36144 * 111.23153 * 358.85153 * 20 5 4 22 22 H 1.08997 * 109.47500 * 298.23284 * 1 2 3 23 23 H 1.09010 * 109.47002 * 58.23589 * 1 2 3 24 24 H 1.09002 * 109.47174 * 178.23171 * 1 2 3 25 25 H 1.09000 * 109.47354 * 181.76323 * 3 2 1 26 26 H 1.09001 * 109.47571 * 301.76624 * 3 2 1 27 27 H 1.09005 * 109.47137 * 61.76683 * 3 2 1 28 28 H 1.08999 * 110.93880 * 148.79787 * 4 2 1 29 29 H 1.08998 * 110.94062 * 25.11356 * 4 2 1 30 30 H 1.07996 * 120.00970 * 0.95141 * 6 5 4 31 31 H 1.08002 * 120.11294 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47120 * 329.99798 * 9 8 7 33 33 H 1.08998 * 109.46862 * 210.00600 * 9 8 7 34 34 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 35 35 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 36 36 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 37 37 H 1.07997 * 119.87921 * 179.72734 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4315 0.0000 4 6 2.0781 -0.7968 -1.2075 5 6 2.2629 -2.1796 -0.6129 6 6 2.4453 -3.4172 -1.1893 7 6 2.5710 -4.5399 -0.3906 8 6 2.5133 -4.4137 0.9853 9 6 2.6458 -5.6363 1.8562 10 6 4.1204 -5.8645 2.1941 11 6 4.2528 -7.0868 3.0656 12 1 3.3732 -7.6453 3.3497 13 6 5.4971 -7.4928 3.4993 14 7 6.5682 -6.8130 3.1528 15 14 5.6612 -9.0082 4.5790 16 1 5.1299 -10.1914 3.8555 17 1 7.0925 -9.2297 4.9069 18 1 4.8917 -8.8082 5.8332 19 6 2.3293 -3.1755 1.5644 20 6 2.2096 -2.0392 0.7678 21 8 2.0393 -0.7365 1.1248 22 1 -0.3634 0.4861 0.9054 23 1 -0.3633 0.5410 -0.8738 24 1 -0.3633 -1.0272 -0.0317 25 1 3.1593 1.4090 -0.0316 26 1 1.6920 1.9625 -0.8737 27 1 1.7433 1.9431 0.9054 28 1 3.0304 -0.3873 -1.5445 29 1 1.3541 -0.8166 -2.0221 30 1 2.4907 -3.5111 -2.2642 31 1 2.7146 -5.5114 -0.8402 32 1 2.2561 -6.5047 1.3251 33 1 2.0806 -5.4896 2.7766 34 1 4.5102 -4.9961 2.7252 35 1 4.6855 -6.0112 1.2736 36 1 7.4436 -7.0984 3.4583 37 1 2.2810 -3.0863 2.6396 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260006881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:12 Heat of formation + Delta-G solvation = -32.262324 kcal Electronic energy + Delta-G solvation = -17246.396258 eV Core-core repulsion = 14567.024639 eV Total energy + Delta-G solvation = -2679.371619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13000 -37.77992 -33.92463 -33.78083 -32.15616 -29.79827 -29.64942 -27.64311 -26.64387 -24.20897 -22.25126 -21.52524 -20.97219 -19.56937 -16.67832 -16.21728 -16.13924 -15.78307 -14.95278 -14.46090 -14.20976 -13.94229 -13.40790 -12.95881 -12.79297 -12.74670 -12.51184 -12.18890 -12.15266 -12.12361 -11.78897 -11.47924 -11.13543 -10.95772 -10.90085 -10.77830 -10.48087 -10.29239 -9.81339 -9.54427 -9.09608 -8.33643 -8.26347 -7.71803 -5.97428 -4.00761 1.68795 1.76438 3.33169 3.35145 3.39478 3.41842 4.06334 4.42767 4.48113 4.51671 4.68618 4.94290 5.14347 5.31045 5.31840 5.37981 5.43724 5.49329 5.53735 5.60340 5.67443 5.81465 5.86288 5.95010 5.99708 6.03281 6.27497 6.48961 6.66083 6.69159 6.75341 6.90686 7.07581 7.16655 7.55705 7.70028 7.84187 8.02344 8.42284 9.06007 9.63094 11.13595 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045004 B = 0.004236 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.015829 B = 6608.666247 C = 6755.812881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.196 4.196 6 C -0.071 4.071 7 C -0.148 4.148 8 C -0.021 4.021 9 C -0.080 4.080 10 C 0.030 3.970 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.138 4.138 20 C 0.105 3.895 21 O -0.300 6.300 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 13.735 -9.485 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 C -0.197 4.197 4 C -0.132 4.132 5 C -0.197 4.197 6 C -0.089 4.089 7 C -0.166 4.166 8 C -0.022 4.022 9 C -0.117 4.117 10 C -0.007 4.007 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.157 4.157 20 C 0.060 3.940 21 O -0.215 6.215 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.830 13.867 -9.255 19.881 hybrid contribution 0.276 -0.824 0.462 0.984 sum -10.554 13.043 -8.793 18.943 Atomic orbital electron populations 1.22177 0.93766 1.03141 1.02760 1.22683 0.94121 0.92814 0.84265 1.21821 1.02042 0.92974 1.02909 1.21777 1.01963 0.91779 0.97694 1.20562 1.10205 0.95023 0.93889 1.20201 0.98731 0.90656 0.99302 1.20973 1.04001 0.98431 0.93206 1.20086 0.92862 0.94942 0.94267 1.20872 1.01824 0.92162 0.96860 1.19077 0.88054 0.96844 0.96757 1.21217 0.92728 1.11156 1.31070 0.92600 1.25020 0.95958 0.97000 0.96386 1.69966 0.98245 1.39593 1.45513 0.86651 0.76931 0.83372 0.80996 1.20222 1.21299 1.20224 1.20196 1.06788 0.88952 0.99734 1.19477 0.97221 0.84448 0.92867 1.86861 1.80233 1.16847 1.37523 0.91478 0.91010 0.91760 0.91432 0.90601 0.91381 0.89636 0.89701 0.86444 0.85586 0.91869 0.92034 0.96350 0.96329 0.92928 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.85 37.16 0.33 -1.26 16 2 C 0.10 1.15 1.26 -89.72 -0.11 1.04 16 3 C -0.14 -1.26 8.96 37.16 0.33 -0.93 16 4 C -0.10 -1.11 6.18 -26.52 -0.16 -1.27 16 5 C -0.20 -3.00 6.27 -104.10 -0.65 -3.66 16 6 C -0.07 -1.08 10.03 -39.72 -0.40 -1.47 16 7 C -0.15 -2.54 9.71 -39.52 -0.38 -2.92 16 8 C -0.02 -0.41 5.12 -104.72 -0.54 -0.95 16 9 C -0.08 -1.69 5.27 -27.89 -0.15 -1.84 16 10 C 0.03 0.78 4.95 -27.88 -0.14 0.65 16 11 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.14 -2.58 9.70 -39.31 -0.38 -2.96 16 20 C 0.10 1.81 6.94 -38.95 -0.27 1.54 16 21 O -0.30 -4.80 10.52 -20.20 -0.21 -5.01 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 25 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 29 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 32 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 33 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -31.57 309.81 -8.61 -40.19 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.85 Total: -2.36 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -2.93 Total: -27.71 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.21 Total: -5.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.57 -8.61 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260006881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.924 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds