Wall clock time and date at job start Mon Mar 30 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.66664 * 2 1 4 4 C 1.54705 * 110.75042 * 236.58204 * 2 1 3 5 5 C 1.51651 * 101.93201 * 266.95486 * 4 2 1 6 6 C 1.37741 * 132.17512 * 164.13911 * 5 4 2 7 7 C 1.38352 * 119.97710 * 180.92223 * 6 5 4 8 8 C 1.38288 * 119.76586 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.82165 * 179.81161 * 8 7 6 10 10 C 1.52997 * 109.47466 * 90.00045 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.37929 * 120.35291 * 0.08866 * 8 7 6 20 20 C 1.38885 * 107.03681 * 344.66484 * 5 4 2 21 21 O 1.36144 * 111.23153 * 358.85153 * 20 5 4 22 22 H 1.08997 * 109.47500 * 298.23284 * 1 2 3 23 23 H 1.09010 * 109.47002 * 58.23589 * 1 2 3 24 24 H 1.09002 * 109.47174 * 178.23171 * 1 2 3 25 25 H 1.09000 * 109.47354 * 181.76323 * 3 2 1 26 26 H 1.09001 * 109.47571 * 301.76624 * 3 2 1 27 27 H 1.09005 * 109.47137 * 61.76683 * 3 2 1 28 28 H 1.08999 * 110.93880 * 148.79787 * 4 2 1 29 29 H 1.08998 * 110.94062 * 25.11356 * 4 2 1 30 30 H 1.07996 * 120.00970 * 0.95141 * 6 5 4 31 31 H 1.08002 * 120.11294 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47120 * 329.99798 * 9 8 7 33 33 H 1.08998 * 109.46862 * 210.00600 * 9 8 7 34 34 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 35 35 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 36 36 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 37 37 H 1.07997 * 119.87921 * 179.72734 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4315 0.0000 4 6 2.0781 -0.7968 -1.2075 5 6 2.2629 -2.1796 -0.6129 6 6 2.4453 -3.4172 -1.1893 7 6 2.5710 -4.5399 -0.3906 8 6 2.5133 -4.4137 0.9853 9 6 2.6458 -5.6363 1.8562 10 6 4.1204 -5.8645 2.1941 11 6 4.2528 -7.0868 3.0656 12 1 3.3732 -7.6453 3.3497 13 6 5.4971 -7.4928 3.4993 14 7 6.5682 -6.8130 3.1528 15 14 5.6612 -9.0082 4.5790 16 1 5.1299 -10.1914 3.8555 17 1 7.0925 -9.2297 4.9069 18 1 4.8917 -8.8082 5.8332 19 6 2.3293 -3.1755 1.5644 20 6 2.2096 -2.0392 0.7678 21 8 2.0393 -0.7365 1.1248 22 1 -0.3634 0.4861 0.9054 23 1 -0.3633 0.5410 -0.8738 24 1 -0.3633 -1.0272 -0.0317 25 1 3.1593 1.4090 -0.0316 26 1 1.6920 1.9625 -0.8737 27 1 1.7433 1.9431 0.9054 28 1 3.0304 -0.3873 -1.5445 29 1 1.3541 -0.8166 -2.0221 30 1 2.4907 -3.5111 -2.2642 31 1 2.7146 -5.5114 -0.8402 32 1 2.2561 -6.5047 1.3251 33 1 2.0806 -5.4896 2.7766 34 1 4.5102 -4.9961 2.7252 35 1 4.6855 -6.0112 1.2736 36 1 7.4436 -7.0984 3.4583 37 1 2.2810 -3.0863 2.6396 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260006881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:12 Heat of formation + Delta-G solvation = -49.354587 kcal Electronic energy + Delta-G solvation = -17247.137434 eV Core-core repulsion = 14567.024639 eV Total energy + Delta-G solvation = -2680.112795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.26527 -39.09517 -35.81171 -34.77772 -33.92908 -31.30807 -30.99251 -28.38415 -28.17246 -25.89274 -23.54520 -23.20590 -22.20103 -20.86800 -18.58426 -17.70614 -17.33370 -16.87387 -16.51832 -16.19372 -15.42320 -14.93992 -14.60962 -14.50128 -14.36787 -14.06891 -13.69973 -13.60109 -13.19763 -13.15760 -12.89529 -12.80733 -12.77040 -12.56888 -12.41851 -11.99302 -11.88006 -11.75143 -11.55450 -11.37455 -11.17414 -10.56239 -9.65936 -9.01138 -8.19943 -6.32769 0.36004 0.44451 1.40254 1.44012 1.51916 2.26081 2.40972 2.75389 3.12704 3.47227 3.56234 3.86929 3.95741 4.08084 4.10658 4.18677 4.47425 4.56505 4.64042 4.66914 4.70894 4.73553 4.82651 4.84456 4.89207 4.98816 5.07219 5.15827 5.26149 5.28980 5.36288 5.46436 5.48151 5.54585 5.73470 5.82208 5.87876 6.21117 6.31363 6.83726 7.36770 8.91632 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045004 B = 0.004236 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.015829 B = 6608.666247 C = 6755.812881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 C -0.137 4.137 4 C -0.090 4.090 5 C -0.192 4.192 6 C -0.066 4.066 7 C -0.157 4.157 8 C -0.046 4.046 9 C -0.065 4.065 10 C 0.037 3.963 11 C -0.546 4.546 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.162 4.162 20 C 0.092 3.908 21 O -0.323 6.323 22 H 0.066 0.934 23 H 0.104 0.896 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.061 0.939 34 H -0.016 1.016 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 14.379 -11.075 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 C -0.194 4.194 4 C -0.127 4.127 5 C -0.193 4.193 6 C -0.084 4.084 7 C -0.175 4.175 8 C -0.046 4.046 9 C -0.102 4.102 10 C 0.000 4.000 11 C -0.584 4.584 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.181 4.181 20 C 0.047 3.953 21 O -0.238 6.238 22 H 0.085 0.915 23 H 0.123 0.877 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.002 0.998 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.992 14.522 -10.850 21.735 hybrid contribution 0.615 -0.892 0.912 1.416 sum -11.376 13.630 -9.939 20.346 Atomic orbital electron populations 1.22191 0.92385 1.02591 1.04358 1.23164 0.95340 0.93645 0.82905 1.21876 1.01635 0.91409 1.04510 1.21928 1.03535 0.88957 0.98290 1.21080 1.07965 0.96913 0.93297 1.20563 0.97060 0.89771 1.00968 1.21173 1.03941 0.99899 0.92503 1.19908 0.95493 0.94119 0.95098 1.20587 0.98054 0.93962 0.97634 1.18903 0.91232 0.94991 0.94850 1.21682 0.93359 1.11902 1.31479 0.91703 1.26026 0.95472 1.00523 0.97816 1.70116 0.98878 1.41600 1.46863 0.85453 0.77122 0.79117 0.79065 1.18822 1.20851 1.19173 1.20200 1.08364 0.89995 0.99523 1.19593 0.97231 0.84704 0.93794 1.86847 1.80523 1.16370 1.40073 0.91521 0.87701 0.93449 0.92138 0.87289 0.91381 0.88400 0.86557 0.82715 0.84683 0.90838 0.92052 0.99752 0.98854 0.92746 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.85 71.98 0.64 -2.07 16 2 C 0.09 1.82 1.26 -10.21 -0.01 1.80 16 3 C -0.14 -2.08 8.96 71.98 0.65 -1.44 16 4 C -0.09 -1.80 6.18 30.73 0.19 -1.61 16 5 C -0.19 -5.55 6.27 -19.52 -0.12 -5.68 16 6 C -0.07 -1.87 10.03 22.18 0.22 -1.65 16 7 C -0.16 -5.37 9.71 22.31 0.22 -5.15 16 8 C -0.05 -1.83 5.12 -19.93 -0.10 -1.93 16 9 C -0.07 -2.87 5.27 29.85 0.16 -2.71 16 10 C 0.04 2.07 4.95 29.85 0.15 2.22 16 11 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 12 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.93 -58.60 13.29 21.45 0.28 -58.31 16 15 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 C -0.16 -6.37 9.70 22.45 0.22 -6.16 16 20 C 0.09 3.20 6.94 22.68 0.16 3.36 16 21 O -0.32 -10.29 10.52 -95.19 -1.00 -11.29 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 25 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.10 1.76 7.91 -2.39 -0.02 1.74 16 29 H 0.12 1.63 7.92 -2.39 -0.02 1.61 16 30 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.07 3.02 8.08 -2.39 -0.02 3.00 16 33 H 0.06 2.64 8.08 -2.39 -0.02 2.62 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -70.81 309.81 5.38 -65.43 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.03 Total: 9.50 kcal Atomic # 6 Polarization: -55.40 SS G_CDS: 3.05 Total: -52.35 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.28 Total: -58.31 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.00 Total: -11.29 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.81 5.38 -65.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260006881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.071 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds